BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137667.10 + phase: 0 /pseudo
(43 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LSM6_MOUSE (P62313) U6 snRNA-associated Sm-like protein LSm6 77 7e-15
LSM6_HUMAN (P62312) U6 snRNA-associated Sm-like protein LSm6 (Sm... 77 7e-15
LSM6_SCHPO (Q9UUI1) U6 snRNA-associated Sm-like protein LSm6 60 1e-09
RUXF_ARATH (Q9SUM2) Probable small nuclear ribonucleoprotein F (... 41 7e-04
RUXF_XENLA (P62321) Small nuclear ribonucleoprotein F (snRNP-F) ... 39 0.002
RUXF_MOUSE (P62307) Small nuclear ribonucleoprotein F (snRNP-F) ... 39 0.002
RUXF_HUMAN (P62306) Small nuclear ribonucleoprotein F (snRNP-F) ... 39 0.002
RUXX_THEAC (P57670) Putative snRNP Sm-like protein 39 0.003
RUXF_NEUCR (Q9P5Z8) Probable small nuclear ribonucleoprotein F (... 37 0.010
RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein 37 0.013
RUXF_CAEEL (P34659) Probable small nuclear ribonucleoprotein F (... 36 0.023
RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein 35 0.030
RUXF_DROME (Q24297) Small nuclear ribonucleoprotein F (snRNP-F) ... 35 0.030
RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein 35 0.039
RUXX_METTH (O26745) Putative snRNP Sm-like protein 35 0.050
RUXF_YEAST (P54999) Small nuclear ribonucleoprotein F (snRNP-F) ... 33 0.11
RUXX_PYRHO (O74016) Putative snRNP Sm-like protein 32 0.25
RUXX_ARCFU (O29386) Putative snRNP Sm-like protein 32 0.25
LSM6_YEAST (Q06406) U6 snRNA-associated Sm-like protein LSm6 32 0.25
RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein 32 0.33
>LSM6_MOUSE (P62313) U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 77.4 bits (189), Expect = 7e-15
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
>LSM6_HUMAN (P62312) U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F)
Length = 80
Score = 77.4 bits (189), Expect = 7e-15
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 40
MNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 80
>LSM6_SCHPO (Q9UUI1) U6 snRNA-associated Sm-like protein LSm6
Length = 75
Score = 59.7 bits (143), Expect = 1e-09
Identities = 26/34 (76%), Positives = 31/34 (90%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+A+E+TEEYVNG+ N YGDAFIRGNNVLY+S
Sbjct: 38 MNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVS 71
>RUXF_ARATH (Q9SUM2) Probable small nuclear ribonucleoprotein F
(snRNP-F) (Sm protein F) (Sm-F) (SmF)
Length = 88
Score = 40.8 bits (94), Expect = 7e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+ + TEEY++GQL G+ IR NNVLY+
Sbjct: 41 MNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 73
>RUXF_XENLA (P62321) Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF)
Length = 86
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+ + TEEY++G L G+ IR NNVLYI
Sbjct: 40 MNMQLANTEEYIDGALSGHLGEVLIRCNNVLYI 72
>RUXF_MOUSE (P62307) Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF)
Length = 86
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+ + TEEY++G L G+ IR NNVLYI
Sbjct: 40 MNMQLANTEEYIDGALSGHLGEVLIRCNNVLYI 72
>RUXF_HUMAN (P62306) Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF)
Length = 86
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+ + TEEY++G L G+ IR NNVLYI
Sbjct: 40 MNMQLANTEEYIDGALSGHLGEVLIRCNNVLYI 72
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein
Length = 83
Score = 38.9 bits (89), Expect = 0.003
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 37
MNI ++ E +NG+ K Y +RG+NV+++S SK
Sbjct: 43 MNIVLQNASEIINGENKGVYDRVLVRGDNVIFVSPSK 79
>RUXF_NEUCR (Q9P5Z8) Probable small nuclear ribonucleoprotein F
(snRNP-F) (Sm protein F) (Sm-F) (SmF)
Length = 90
Score = 37.0 bits (84), Expect = 0.010
Identities = 17/43 (39%), Positives = 22/43 (50%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MNI + T+EY+N + G IR NNVLYI + G
Sbjct: 42 MNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIKKADEAETSG 84
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein
Length = 83
Score = 36.6 bits (83), Expect = 0.013
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 37
MN+ ++ E +NG+ K + +RG+NV+++S SK
Sbjct: 43 MNVVLQNASEIINGENKGVFDRILVRGDNVIFVSPSK 79
>RUXF_CAEEL (P34659) Probable small nuclear ribonucleoprotein F
(snRNP-F) (Sm protein F) (Sm-F) (SmF)
Length = 85
Score = 35.8 bits (81), Expect = 0.023
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
MN+ + EEY++G + G+ IR NNVLY+
Sbjct: 42 MNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYV 74
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein
Length = 72
Score = 35.4 bits (80), Expect = 0.030
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+ ++ EE +G++ +K+ IRG+NV+Y+S
Sbjct: 38 MNLVLDNAEELRDGEVVSKFSSVVIRGDNVVYVS 71
>RUXF_DROME (Q24297) Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) (Membrane-associated
protein Deb-B)
Length = 88
Score = 35.4 bits (80), Expect = 0.030
Identities = 17/43 (39%), Positives = 23/43 (52%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
MN+ + TEE + G + G+ IR NNVLYI + EG
Sbjct: 42 MNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEG 84
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein
Length = 72
Score = 35.0 bits (79), Expect = 0.039
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+ ++ EE G++ +K+ IRG+NV+Y+S
Sbjct: 38 MNLVLDNAEELREGEVVSKFSSVVIRGDNVVYVS 71
>RUXX_METTH (O26745) Putative snRNP Sm-like protein
Length = 81
Score = 34.7 bits (78), Expect = 0.050
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+ + EE +G++ + G IRG+N++YIS
Sbjct: 47 MNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYIS 80
>RUXF_YEAST (P54999) Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF)
Length = 86
Score = 33.5 bits (75), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (61%)
Query: 2 NIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
N+ + + EE+V G G+ FIR NNVLYI
Sbjct: 50 NLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYI 81
>RUXX_PYRHO (O74016) Putative snRNP Sm-like protein
Length = 75
Score = 32.3 bits (72), Expect = 0.25
Identities = 14/37 (37%), Positives = 23/37 (61%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 37
+N+ + E +G++ KYG IRG+NVL IS ++
Sbjct: 38 LNVVLADAEMVQDGEVVKKYGKIVIRGDNVLAISPTE 74
>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein
Length = 77
Score = 32.3 bits (72), Expect = 0.25
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 34
MN+ + EE NG++ K G IRG+ V+++S
Sbjct: 38 MNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVS 71
>LSM6_YEAST (Q06406) U6 snRNA-associated Sm-like protein LSm6
Length = 123
Score = 32.3 bits (72), Expect = 0.25
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 1 MNIAMEQTEEYV---NGQLKNKYG-DAFIRGNNVLYISTSK 37
MN+A+ E+ N +L NK+ D F+RG V+YIS K
Sbjct: 82 MNVALSSATEHYESNNNKLLNKFNSDVFLRGTQVMYISEQK 122
>RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein
Length = 76
Score = 32.0 bits (71), Expect = 0.33
Identities = 14/37 (37%), Positives = 23/37 (61%)
Query: 1 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 37
+N+ + E +G++ KYG IRG+NVL IS ++
Sbjct: 38 LNVVLANAELLQDGEVVKKYGKIVIRGDNVLAISPTE 74
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,339,261
Number of Sequences: 164201
Number of extensions: 95395
Number of successful extensions: 217
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 26
length of query: 43
length of database: 59,974,054
effective HSP length: 19
effective length of query: 24
effective length of database: 56,854,235
effective search space: 1364501640
effective search space used: 1364501640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC137667.10