BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137603.5 + phase: 0
(370 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PEXC_ARATH (Q9M841) Putative peroxisome assembly protein 12 (Per... 483 e-136
PEXC_HUMAN (O00623) Peroxisome assembly protein 12 (Peroxin-12) ... 179 1e-44
PEXC_MOUSE (Q8VC48) Peroxisome assembly protein 12 (Peroxin-12) 175 1e-43
PEXC_RAT (O88177) Peroxisome assembly protein 12 (Peroxin-12) (P... 172 1e-42
PEXC_CRILO (Q9ET67) Peroxisome assembly protein 12 (Peroxin-12) 172 1e-42
PEXC_CAEEL (Q19189) Putative peroxisome assembly protein 12 (Per... 135 2e-31
PEXC_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Per... 93 1e-18
PEXC_PICPA (Q01961) Peroxisome assembly protein 12 (Peroxin-12) ... 88 4e-17
PEXC_YEAST (Q04370) Peroxisome assembly protein 12 (Peroxin-12) 67 9e-11
DTX3_MOUSE (Q80V91) Deltex protein 3 (Deltex-3) (Deltex3) (mDTX3) 47 6e-05
DTX3_HUMAN (Q8N9I9) Deltex protein 3 (Deltex-3) (Deltex3) 47 1e-04
PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) ... 43 0.001
SCX_MOUSE (Q64124) Basic helix-loop-helix transcription factor s... 39 0.027
ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0 39 0.027
CO1H_MOUSE (Q9R1A8) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (... 37 0.061
CO1H_HUMAN (Q8NHY2) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (... 37 0.061
POL2_ARMVN (Q91HK4) RNA2 polyprotein (P2) [Contains: P2A protein... 37 0.10
COP1_ARATH (P43254) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (... 36 0.14
TRA4_HUMAN (Q9BUZ4) TNF receptor associated factor 4 (Cysteine-r... 36 0.18
LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding pro... 36 0.18
>PEXC_ARATH (Q9M841) Putative peroxisome assembly protein 12
(Peroxin-12)
Length = 372
Score = 483 bits (1244), Expect = e-136
Identities = 241/396 (60%), Positives = 293/396 (73%), Gaps = 52/396 (13%)
Query: 1 MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60
MLFQVGG+G+RPTFFEMAAA+QLP SLRAALTYS+GV ALR FLHK+LDYE E F+ LM
Sbjct: 1 MLFQVGGEGTRPTFFEMAAAQQLPASLRAALTYSLGVFALRRSFLHKILDYEDEFFAALM 60
Query: 61 LVLEAHSLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQ------LRRRQKLLSLLF 114
L+LE HSLRTTD SF+ESLYGLRR+ A ++L + + SS+ L +RQ++LS++F
Sbjct: 61 LILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVF 120
Query: 115 LVVLPYLKSKLHSIYNKEREARIQATIWGDENESY-----------------TFNARASV 157
LVVLPY KSKLH+IYNKEREAR++ ++WG E++ + + N SV
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELSV 180
Query: 158 TTLITKRFQKIVGLCYPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIHVCRATGQE 217
+ + +K + +CYP +HA +EG F YQLLYLLDATG+YSL L ALGI VCRATGQE
Sbjct: 181 RVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRATGQE 240
Query: 218 LMDASSRISKIRSRERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWW 277
L T+QGALLSC+Y VLDYAQTGLIAAVF FKMMEWW
Sbjct: 241 L-------------------------TVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEWW 275
Query: 278 YQSAEERMSAPTVYPPPPPPPPPKV----AKEGVQLPSDRTICPLCLQKRVNPSVMTVSG 333
YQSAEER+SAPTVYPPPPPPP PKV AKEG+ LP DR++C LCLQKR NPSV+TVSG
Sbjct: 276 YQSAEERLSAPTVYPPPPPPPAPKVINQMAKEGIPLPPDRSLCALCLQKRANPSVVTVSG 335
Query: 334 FVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFHD 369
FVFCY+C+FK++++YKRCP T++PA+VDQIRRLF D
Sbjct: 336 FVFCYSCVFKYVSKYKRCPVTLIPASVDQIRRLFQD 371
>PEXC_HUMAN (O00623) Peroxisome assembly protein 12 (Peroxin-12)
(Peroxisome assembly factor-3) (PAF-3)
Length = 359
Score = 179 bits (454), Expect = 1e-44
Identities = 119/364 (32%), Positives = 184/364 (49%), Gaps = 32/364 (8%)
Query: 11 RPTFFEMAAAEQLPRSLRAALTYSIGVLALRTP----FLHKLLDYEHESFSLLMLVLEAH 66
+P+ FE+ A + L ++R AL + + VLA P FL + D E F+LL L+L+ H
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD---EIFTLLDLLLQQH 73
Query: 67 SLRTTDASFSESLYGLRRRPANIKLNDNDSSS--SSSQLRRRQKLLSLLFLVVLPYLKSK 124
L T ASFSE+ YGL+R I + D S +S+ L ++Q S++FLV+LPYLK K
Sbjct: 74 YLSRTSASFSENFYGLKR----IVMGDTHKSQRLASAGLPKQQLWKSIMFLVLLPYLKVK 129
Query: 125 LHSIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQ 184
L + + RE DE + ++R KRF + YP ++ EG+
Sbjct: 130 LEKLVSSLREE--------DEYSIHPPSSR-------WKRFYRAFLAAYPFVNMAWEGWF 174
Query: 185 FAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRERERLRGPQWIKT 244
QL Y+L ++S L G+ + R T Q++ + +K ++ + I +
Sbjct: 175 LVQQLRYILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINS 234
Query: 245 LQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSA-EERMSAPTVYPPPPPPPPPKVA 303
AL V TGL VFF + ++WWY S +E + + T P PPPP
Sbjct: 235 ---ALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYN 291
Query: 304 KEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQI 363
+ LP +T+CPLC + RVN +V+ SG+VFCY C+F ++ ++ CP T P V +
Sbjct: 292 SDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHL 351
Query: 364 RRLF 367
+L+
Sbjct: 352 IKLY 355
>PEXC_MOUSE (Q8VC48) Peroxisome assembly protein 12 (Peroxin-12)
Length = 359
Score = 175 bits (444), Expect = 1e-43
Identities = 117/362 (32%), Positives = 181/362 (49%), Gaps = 28/362 (7%)
Query: 11 RPTFFEMAAAEQLPRSLRAALTYSIGVLALRTP----FLHKLLDYEHESFSLLMLVLEAH 66
+P+ FE+ A + L ++R AL + + VLA P FL + D E F+LL +L+ H
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFLWRWFD---EIFTLLDFLLQQH 73
Query: 67 SLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQLRRRQKLLSLLFLVVLPYLKSKLH 126
L T ASFSE YGL+R A + + +S+ L + S +FLV+LPYLK KL
Sbjct: 74 YLSRTSASFSEHFYGLKRIVAGS--SPHLQRPASAGLPKEHLWKSAMFLVLLPYLKVKLE 131
Query: 127 SIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFA 186
+ + RE DE + ++R KRF + YP ++ EG+
Sbjct: 132 KLASSLREE--------DEYSIHPPSSR-------WKRFYRAFLAAYPFVNMAWEGWFLT 176
Query: 187 YQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRERERLRGPQWIKTLQ 246
QL Y+L ++S L G+ + R T Q++ R+ + S +E +R + ++
Sbjct: 177 QQLRYILGKAEHHSPLLKLAGVRLARLTAQDMQAIKQRLVEA-SAMQEPVRSVG--EKIK 233
Query: 247 GALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSA-EERMSAPTVYPPPPPPPPPKVAKE 305
AL V TGL VFF + ++WWY S +E + + T P PPPP +
Sbjct: 234 SALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQEAIKSLTALPTPPPPVHLDYNSD 293
Query: 306 GVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRR 365
LP +T+CPLC + RVN +V+ SG+VFCY C+F ++ ++ CP T P V + +
Sbjct: 294 SPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFNYVRSHQACPITGYPTEVQHLIK 353
Query: 366 LF 367
L+
Sbjct: 354 LY 355
>PEXC_RAT (O88177) Peroxisome assembly protein 12 (Peroxin-12)
(Peroxisome assembly factor-3) (PAF-3)
Length = 359
Score = 172 bits (436), Expect = 1e-42
Identities = 116/363 (31%), Positives = 179/363 (48%), Gaps = 30/363 (8%)
Query: 11 RPTFFEMAAAEQLPRSLRAALTYSIGVLALRTP----FLHKLLDYEHESFSLLMLVLEAH 66
+P+ FE+ A + L ++R AL + + VLA P F + D E F+LL +L+ H
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFFWRWFD---EIFTLLDFLLQQH 73
Query: 67 SLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQLRRRQKLLSLLFLVVLPYLKSKLH 126
L T ASFSE YGL+R A + +S+ L + S +FLV+LPYLK KL
Sbjct: 74 YLSRTSASFSEHFYGLKRIVAGS--SPQLQRPASAGLPKEHLWKSAMFLVLLPYLKVKLE 131
Query: 127 SIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFA 186
+ + RE + Y+ + +S KRF ++ YP + EG+
Sbjct: 132 KLASTLRE-----------EDEYSIHPPSSHW----KRFYRVFLAAYPFVTMTWEGWFLT 176
Query: 187 YQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRS-RERERLRGPQWIKTL 245
QL Y+L ++S L G+ + R T Q++ R+ + + +E R G K +
Sbjct: 177 QQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAMEHRLVEASAMQEPVRSIG----KKI 232
Query: 246 QGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSA-EERMSAPTVYPPPPPPPPPKVAK 304
+ AL V TGL VFF + ++WWY S +E + + T P PPPP
Sbjct: 233 KSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNS 292
Query: 305 EGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIR 364
+ LP +T+CPLC + RVN +V+ SG+VFCY C+F ++ ++ CP T P V +
Sbjct: 293 DSPLLPKMKTVCPLCRKARVNDTVLATSGYVFCYRCVFNYVRSHQACPITGYPTEVQHLI 352
Query: 365 RLF 367
+L+
Sbjct: 353 KLY 355
>PEXC_CRILO (Q9ET67) Peroxisome assembly protein 12 (Peroxin-12)
Length = 359
Score = 172 bits (436), Expect = 1e-42
Identities = 114/362 (31%), Positives = 176/362 (48%), Gaps = 28/362 (7%)
Query: 11 RPTFFEMAAAEQLPRSLRAALTYSIGVLALRTP----FLHKLLDYEHESFSLLMLVLEAH 66
+P+ FE+ A + L ++R AL + + VLA P F + D E F+LL +L+ H
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFFWRWFD---EIFTLLDFLLQQH 73
Query: 67 SLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQLRRRQKLLSLLFLVVLPYLKSKLH 126
L T ASFSE YGL+R A + +S+ L + S +FLV+LPYLK KL
Sbjct: 74 YLSRTSASFSEHFYGLKRIVAGS--SQQPQRPASAGLPKEHLWKSTMFLVLLPYLKVKLE 131
Query: 127 SIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFA 186
+ + RE + Y+ + +S KRF + YP ++ EG+
Sbjct: 132 KLASSLRE-----------EDEYSIHPPSSHW----KRFYRAFLAAYPFVNMAWEGWFLT 176
Query: 187 YQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRERERLRGPQWIKTLQ 246
QL Y+L ++S L G+ + R T Q++ R+S+ + + IK
Sbjct: 177 QQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAIEHRLSEASVMQDPVRSVGEKIKL-- 234
Query: 247 GALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSA-EERMSAPTVYPPPPPPPPPKVAKE 305
AL + TGL VFF + ++WWY S +E + + T P PPPP +
Sbjct: 235 -ALKKAVGGIALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSD 293
Query: 306 GVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRR 365
LP +T+CPLC + RVN +V+ SG+VFCY C+F ++ ++ CP T P V + +
Sbjct: 294 SPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFNYVRSHQACPITGYPTEVQHLIK 353
Query: 366 LF 367
L+
Sbjct: 354 LY 355
>PEXC_CAEEL (Q19189) Putative peroxisome assembly protein 12
(Peroxin-12)
Length = 359
Score = 135 bits (339), Expect = 2e-31
Identities = 100/370 (27%), Positives = 176/370 (47%), Gaps = 46/370 (12%)
Query: 11 RPTFFEMAAAEQLPRSLRAALTYSIGVLALRTP----FLHKLLDYEHESFSLLMLVLEAH 66
+P+ F++ A E L S+R AL + + LA P +H+ D E + + L+L+ H
Sbjct: 22 QPSVFDIIAQENLATSIRPALQHLVKYLAFFKPKTFLSVHRNFD---EYYIIFDLILQNH 78
Query: 67 SLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQLRRRQKLLSLLFLVVLPYLKSKLH 126
LR ASF+E+ Y ++R + ND R++++SL+ LV PY+++KL+
Sbjct: 79 YLRNYGASFTENFYSMKRIASGTGNPPNDG---------RERIMSLITLVGWPYVENKLN 129
Query: 127 SIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFA 186
+Y++ +E Y + +S+ + K QK+ + +P + + + A
Sbjct: 130 QLYDRLKEV-------------YECRSWSSINGMKAK-CQKMFVIIWPYIKTALKAVKSA 175
Query: 187 YQLLYLLDATGYYSLALHALGIHVCRATGQEL---------MDASSRISKIRSRERERLR 237
QL Y+L+ + +S L+ G+ + T ++L + +IS+ E LR
Sbjct: 176 LQLAYILNRSSIHSPWLYFSGVILKHLTPEDLEAFNAVPLHLQTGYQISRGTLNEHIHLR 235
Query: 238 GPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPP 297
+ + +L V GL FF + +++ Y + +++ + P P
Sbjct: 236 ---FFNRIWRFILGLPGIVSRLFAYGL----FFVQFLDYMYNTDLAKLTKTGLDGAIPSP 288
Query: 298 PPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVP 357
P + E L D CP+CL+KRVN + + VSG+VFCY CI +++ Y +CP T P
Sbjct: 289 PHKMIISESEILSLDTNKCPICLKKRVNDTALFVSGYVFCYTCINQYVNTYNKCPVTGCP 348
Query: 358 ATVDQIRRLF 367
A V + RLF
Sbjct: 349 ANVQHLIRLF 358
>PEXC_DROME (Q9VPT5) Putative peroxisome assembly protein 12
(Peroxin-12)
Length = 297
Score = 92.8 bits (229), Expect = 1e-18
Identities = 85/357 (23%), Positives = 141/357 (38%), Gaps = 77/357 (21%)
Query: 12 PTFFEMAAAEQLPRSLRAALTYSIGVLALRTPF-LHKLLDYEHESFSLLMLVLEAHSLRT 70
P+ FE++A+E L + AL+ LR F L L + E LL +L+ LR
Sbjct: 15 PSIFEISASETLDNLIYPALSKIFDYFGLRLDFKLWGSLRIQEELSPLLTWLLQYLYLRK 74
Query: 71 TDASFSESLYGLRRRPANIKLNDNDSSSSSSQLRRRQKLLSLLFLVVLPYLKSKLHSIYN 130
+SF ES YGL+R +++ L RRQ+ S L +PY++ KL +
Sbjct: 75 RASSFGESFYGLQRTV----------TTTGDLLNRRQQFASATLLTFMPYVERKLRTRIT 124
Query: 131 KEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFAYQLL 190
+ + T +++ + + HA + A+
Sbjct: 125 RHED---------------------------TSPWEQRLLSAFHAFHAA----KAAHTFF 153
Query: 191 YLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRERERLRGPQWIKTLQGALL 250
YL+ +S LG+ + + E + QW
Sbjct: 154 YLVKYASNHSPIFRLLGLTLRYPS-------------------EPPKEDQW--------- 185
Query: 251 SCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGVQLP 310
TY VL + FF + ++WWY + + R T+ P P ++ KE Q
Sbjct: 186 --TYVVLKMLEV----LAFFLQFVQWWYSNDQRRKVGGTLINPEAMPRK-QLPKEVQQSL 238
Query: 311 SDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLF 367
R CP+CL P+ +VSG+VFC+ CI + ++ CP T P ++D + R++
Sbjct: 239 PQRGECPVCLLSIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295
>PEXC_PICPA (Q01961) Peroxisome assembly protein 12 (Peroxin-12)
(Peroxisome assembly protein PAS10)
Length = 409
Score = 87.8 bits (216), Expect = 4e-17
Identities = 95/385 (24%), Positives = 166/385 (42%), Gaps = 60/385 (15%)
Query: 12 PTFFEMAAAEQLPRSLRAALTYSIGVLALRTP-FLHKLLDYEHESFSLLMLVLEAHSLRT 70
PT FE+ +A++L + L ++ Y + R P +L K+ ++ E + +E L
Sbjct: 17 PTLFEIISAQELEKLLTPSIRYILVHYTQRYPRYLLKVANHFDELNLAIRGFIEFRQLSH 76
Query: 71 TDASFSESLYGLRR-RPANIKLNDNDSSSSSSQLRRRQKL------LSLLFLVVLPYLKS 123
+++F + YGL++ R + S + L +R++L +SL +V +PYL+
Sbjct: 77 WNSTFIDKFYGLKKVRNHQTISTERLQSQVPTLLEQRRRLSKTQIAVSLFEIVGVPYLRD 136
Query: 124 KLHSIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLCYPLLHAGTEGF 183
KL +Y+K + + + + S+ T + F K+ YP+L +
Sbjct: 137 KLDHLYDKLYPKLMMNNL----------DPKESLKTFVQYYFLKL----YPILLSVLTTI 182
Query: 184 QFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRERERLRGPQWIK 243
Q Q+LYL S+ + + R + R++K ++ G +
Sbjct: 183 QVLLQVLYLSGTFKSPSIIMWLFKMKYARLNSYDYTLDEQRVNKFLNKTSPGKLGTGNNR 242
Query: 244 ----TLQGALLSCTYTVLDYAQTGLI--------AAVFFFKMMEWWYQSA-EERMSAP-T 289
TL +L + + GL+ A++F K +EWW S +M+ P
Sbjct: 243 IRPITLTESLYLLYSDLTRPLKKGLLITGGTLFPASIFLLKFLEWWNSSDFATKMNKPRN 302
Query: 290 VYPPPPPPPPPKVAKEGVQLPSDRTI-------------CPLCLQKRVNPSVMTVSGFVF 336
+ PPP ++K+ L +DR I CPLC ++ NP+V+ +G+VF
Sbjct: 303 PFSDSELPPPINLSKD---LLADRKIKKLLKKSQSNDGTCPLCHKQITNPAVIE-TGYVF 358
Query: 337 CYACIFKFLTQYK-------RCPAT 354
CY CIFK LT + RCP T
Sbjct: 359 CYTCIFKHLTSSELDEETGGRCPIT 383
>PEXC_YEAST (Q04370) Peroxisome assembly protein 12 (Peroxin-12)
Length = 399
Score = 66.6 bits (161), Expect = 9e-11
Identities = 90/373 (24%), Positives = 148/373 (39%), Gaps = 48/373 (12%)
Query: 5 VGGQGSRPTFFEMAAAEQLPRSLRAALTYSIG---VLALRTPFLHKLLDYEHESFSLLML 61
VG + PT FE+ +++++ L A++ Y + V + +L Y E F +
Sbjct: 25 VGLEPLYPTIFEIMSSQEIDSLLPASIRYLLANHLVANFPNRYTLRLNKYFFEWFQAIKG 84
Query: 62 VLEAHSLRTTDASFSESLYGLR---RRPANIKLNDNDSSSSSS------QLRRRQKLLSL 112
+E + L+T +++F + YGL+ R N+ L + S QL ++QK +
Sbjct: 85 FVEWYHLKTYNSTFIDRFYGLQLFSSRDRNLALTQCLNPKGQSEWPQGLQLNQQQKSVIF 144
Query: 113 LFLVVLPYLKSKLHSIYNKEREARIQATIWGDENESYTFNARASVTTLITKRFQKIVGLC 172
L ++LPY+ +KL I K I ++ DE E+ + RA F +I
Sbjct: 145 LEKIILPYITAKLDEILEKISMNNIFSS---DETEN-KWPKRA---------FLRI---- 187
Query: 173 YPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDASSRISKIRSRE 232
YP + +LL+L TG SL + I T + L S + + + +
Sbjct: 188 YPFIKKLLALSNLLVKLLFLTKRTGSVSLLQYLFKIEY--TTVRPLSSELSGLKETKGMD 245
Query: 233 -RERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAA-VFFFKMMEWW--------YQSAE 282
R R I L LS L + + +F ++ +WW Q
Sbjct: 246 NRLRKTNISSIFALMQGQLSIIPRFLTFMGSQFFPTFIFVLRVYQWWTTQDMTTKLQKRV 305
Query: 283 ERMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIF 342
+ PP KEGV CP+C + NP V+ +G+V CY C
Sbjct: 306 NDLDEDIPRPPFSSHSDKTEDKEGVS-----EACPVCEKTVQNPCVLE-TGYVACYPCAI 359
Query: 343 KFLTQYK-RCPAT 354
+L + CP T
Sbjct: 360 SYLVNNEGHCPVT 372
>DTX3_MOUSE (Q80V91) Deltex protein 3 (Deltex-3) (Deltex3) (mDTX3)
Length = 347
Score = 47.4 bits (111), Expect = 6e-05
Identities = 22/61 (36%), Positives = 27/61 (44%)
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRC 351
PPPPP PPP + T CP+CL + N + FC CI + L K C
Sbjct: 140 PPPPPLPPPLPPRLREDAEEQETTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKAC 199
Query: 352 P 352
P
Sbjct: 200 P 200
>DTX3_HUMAN (Q8N9I9) Deltex protein 3 (Deltex-3) (Deltex3)
Length = 347
Score = 46.6 bits (109), Expect = 1e-04
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRC 351
PPPPP PPP + + + CP+CL + N + FC CI + L K C
Sbjct: 140 PPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKAC 199
Query: 352 P 352
P
Sbjct: 200 P 200
>PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10)
(AthPEX10) (Pex10p) (PER8)
Length = 381
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFH 368
C LCL R +P+ T G VFC++CI ++ + + CP P T + L+H
Sbjct: 327 CTLCLSTRQHPTA-TPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYH 378
>SCX_MOUSE (Q64124) Basic helix-loop-helix transcription factor
scleraxis
Length = 207
Score = 38.5 bits (88), Expect = 0.027
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICPLCLQKR 323
P PPPPPPP +A++G + + IC CL +
Sbjct: 161 PLPPPPPPPPLARDGGENTQPKQICTFCLSNQ 192
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0
Length = 532
Score = 38.5 bits (88), Expect = 0.027
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVP 357
CP+CL+ N S+ FCY CI +++ Q CP VP
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>CO1H_MOUSE (Q9R1A8) Ubiquitin ligase protein COP1 (EC 6.3.2.-)
(Constitutive photomorphogenesis protein 1 homolog)
(mCOP1)
Length = 733
Score = 37.4 bits (85), Expect = 0.061
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 311 SDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLF 367
S+ +CP+C + + MT G FCY CI + L RCP VD I L+
Sbjct: 133 SNDFVCPICFDM-IEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNY--VVDNIDHLY 186
>CO1H_HUMAN (Q8NHY2) Ubiquitin ligase protein COP1 (EC 6.3.2.-)
(Constitutive photomorphogenesis protein 1 homolog)
(hCOP1)
Length = 731
Score = 37.4 bits (85), Expect = 0.061
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 311 SDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLF 367
S+ +CP+C + + MT G FCY CI + L RCP VD I L+
Sbjct: 131 SNDFVCPICFDM-IEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNY--VVDNIDHLY 184
>POL2_ARMVN (Q91HK4) RNA2 polyprotein (P2) [Contains: P2A protein
(2A); Movement protein (2B-MP); Coat protein (2C-CP)]
Length = 1110
Score = 36.6 bits (83), Expect = 0.10
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 257 LDYAQTGLIAAVFFFKMMEW--------WYQSAEERM-----SAPTVYPPPPPPP--PPK 301
L+Y Q + F M W WY +++ER P + PPPPPPP P
Sbjct: 156 LEYPQGAPLVVPRGFAAMRWTYHATWRRWYDASDERALRVHPGGPALPPPPPPPPIQKPP 215
Query: 302 VAKEGVQLPSDRTIC 316
+E +Q +R C
Sbjct: 216 SFEERLQAALERQSC 230
>COP1_ARATH (P43254) Ubiquitin ligase protein COP1 (EC 6.3.2.-)
(Constitutive photomorphogenesis protein 1)
Length = 675
Score = 36.2 bits (82), Expect = 0.14
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 315 ICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQI 363
+CP+C+Q + + +T G FCY CI L CP T +Q+
Sbjct: 51 LCPICMQI-IKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQL 98
>TRA4_HUMAN (Q9BUZ4) TNF receptor associated factor 4 (Cysteine-rich
domain associated with RING and Traf domains protein 1)
(Malignant 62)
Length = 470
Score = 35.8 bits (81), Expect = 0.18
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 307 VQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQ-YKRCPATMVP 357
++ P R +CPLC + P ++ G FC C+ +FL++ +CP +P
Sbjct: 9 LEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP 60
>LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding
protein 2) (PDZ domain containing RING finger protein 1)
Length = 690
Score = 35.8 bits (81), Expect = 0.18
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 312 DRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCP 352
D +C +CLQ + P + T G FCY C+ FL + CP
Sbjct: 46 DDLVCHICLQPLLQP-LDTPCGHTFCYKCLRNFLQEKDFCP 85
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,492,624
Number of Sequences: 164201
Number of extensions: 1772374
Number of successful extensions: 19967
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 17351
Number of HSP's gapped (non-prelim): 1157
length of query: 370
length of database: 59,974,054
effective HSP length: 112
effective length of query: 258
effective length of database: 41,583,542
effective search space: 10728553836
effective search space used: 10728553836
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Medicago: description of AC137603.5