BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137603.10 + phase: 0 
         (388 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LIPC_SOLTU (P80471) Light-induced protein, chloroplast precursor...    45  4e-04
LIPC_SOLDE (O99019) Light-induced protein, chloroplast precursor...    43  0.002
RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC ...    31  4.7
Y229_MYCGA (P53660) Hypothetical protein MG447 homolog MYCGA2290       30  8.0
VGLN_CHICK (P81021) Vigilin                                            30  8.0

>LIPC_SOLTU (P80471) Light-induced protein, chloroplast precursor
           (Chloroplastic drought-induced stress protein CDSP-34)
          Length = 326

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 59/230 (25%), Positives = 90/230 (38%), Gaps = 51/230 (22%)

Query: 53  ENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLEHIGGVSDPTNS-SLIEGRWQLIFTTR 111
           +  L  +L G   RG S+S +    I   I  LE       PT + +L+ G+W L +T+ 
Sbjct: 103 KKQLADSLYGTN-RGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161

Query: 112 PGTASPIQRTFVGVDFFSVFQEVYLQTNDPR---VTNIVSFSDAIGELKVEAAAS--IGD 166
            G    + R  + +    V  E   QT D     V N V F+  +    +   A   +  
Sbjct: 162 SGLFPLLSRGNLPL----VRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query: 167 GKRILFRFDRAAF-------------SFKFLPFKV---PY-------------------- 190
            KR+  +F+                 + +FL  K+   P+                    
Sbjct: 218 PKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISS 277

Query: 191 --PVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQK 238
             P+ F +  + A+ WL TTYL     LRISRG+ G+ FVL K+  P  K
Sbjct: 278 QPPIKFPITNNNAQSWLLTTYLDDE--LRISRGDAGSVFVLIKEGSPLLK 325


>LIPC_SOLDE (O99019) Light-induced protein, chloroplast precursor
           (C40.4)
          Length = 326

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 51/230 (22%)

Query: 53  ENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLEHIGGVSDPTNS-SLIEGRWQLIFTTR 111
           +  L  +L G   RG S+S +    I   I  LE       PT + +L+ G+W L +T+ 
Sbjct: 103 KKQLADSLYGTN-RGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSF 161

Query: 112 PGTASPIQRTFVGVDFFSVFQEVYLQTNDPR---VTNIVSFSDAIGELKVEAAAS--IGD 166
            G    + R  + +    V  E   QT D     V N V F+  +    +   A   +  
Sbjct: 162 SGLFPLLSRGNLPL----VRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRS 217

Query: 167 GKRILFRFDRAAF-------------SFKFLPFKV---PY-------------------- 190
            KR+  +F+                 + +FL  K+   P+                    
Sbjct: 218 PKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISS 277

Query: 191 --PVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQK 238
             P+ F +  + A+ WL TTYL     LRI RG+ G+ FVL K+  P  K
Sbjct: 278 QPPIKFPITNNNAQSWLLTTYLDDE--LRIPRGDAGSVFVLIKEGSPLLK 325


>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC
           2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
           chain) (RNA polymerase beta' subunit)
          Length = 1398

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 275 WQMIWNSQTVTDSWLENAANGLMGKQIVEKNGRIKYVVNILLGLKFSMSGIFVKSSPKVY 334
           WQ +  +  V+  W+E  A  +M   ++ KN RI Y +   L  K  +SG+      +VY
Sbjct: 554 WQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKREISGVI----DQVY 609

Query: 335 EVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNEIIFVHAR 384
                   +I         F  + +    +N  K  IS G ++++  H +
Sbjct: 610 RHCGQKETVI---------FCDRIMALGFYNAFKAGISFGKDDMVVPHGK 650


>Y229_MYCGA (P53660) Hypothetical protein MG447 homolog MYCGA2290
          Length = 596

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 31/135 (22%), Positives = 55/135 (39%), Gaps = 17/135 (12%)

Query: 194 FKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAI 253
           F  +    + W+   YL+ S NL+I   N      L +        +T I + + +   +
Sbjct: 92  FNFVDSNGQSWIYQDYLTASNNLKIPPFNIND---LIRAAISISAPITVIINALTLLITM 148

Query: 254 DKLISLNKNSGEEDPELEEGEW------QMIWNSQT------VTDSWLENAANGLMGKQI 301
                 +K  G  D E  +  W       +I +  T      V  +WL ++ANG M + +
Sbjct: 149 GLANQFSKALGRGDEEKIKEVWATGFITNVIVSIATSMIIVGVAKTWLTSSANGTMNRSL 208

Query: 302 --VEKNGRIKYVVNI 314
             ++ N R  Y+V+I
Sbjct: 209 ESLDTNSRYGYIVSI 223


>VGLN_CHICK (P81021) Vigilin
          Length = 1270

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (52%)

Query: 214 GNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKN 262
           GN+R  R N G   +     +  Q+L+T + +   V+EA  +L +L KN
Sbjct: 748 GNIRKVRDNTGARIIFPTSEDKDQELITIMGTEEAVKEAQKELEALIKN 796


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,381,006
Number of Sequences: 164201
Number of extensions: 1931842
Number of successful extensions: 4739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4732
Number of HSP's gapped (non-prelim): 7
length of query: 388
length of database: 59,974,054
effective HSP length: 112
effective length of query: 276
effective length of database: 41,583,542
effective search space: 11477057592
effective search space used: 11477057592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)