BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137553.4 - phase: 0 /pseudo
(921 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 64 2e-09
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 48 1e-04
POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropep... 47 2e-04
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 46 4e-04
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 46 4e-04
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 46 5e-04
POL_FIVPE (P16088) Pol polyprotein [Contains: Protease (Retropep... 45 7e-04
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 45 7e-04
POL_FIVT2 (P31822) Pol polyprotein [Contains: Protease (Retropep... 45 9e-04
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 45 0.001
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 45 0.001
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 44 0.003
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 43 0.004
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 42 0.006
POL_IPMA (P11368) Putative Pol polyprotein [Contains: Integrase ... 42 0.006
POL_SMRVH (P03364) Pol polyprotein [Contains: Reverse transcript... 42 0.008
POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase ... 41 0.013
M850_ARATH (P92522) Hypothetical mitochondrial protein AtMg00850... 41 0.013
POL_JSRV (P31623) Pol polyprotein [Contains: Reverse transcripta... 40 0.037
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 40 0.037
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNRYLL 63
E++K ++ ++ K R S SPW +PV+LVKKKDGS+R+ IDYR++NKV N + L
Sbjct: 957 EIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPL 1012
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/66 (37%), Positives = 41/66 (61%), Gaps = 6/66 (9%)
Query: 4 SELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDG------SMRLRIDYRQLNKVTI 57
S++ E++ Q++ L++ K PSVS + +P+LLV KK RL IDYRQ+NK +
Sbjct: 325 SQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLL 384
Query: 58 KNRYLL 63
+++ L
Sbjct: 385 ADKFPL 390
>POL_FIVSD (P19028) Pol polyprotein [Contains: Protease
(Retropepsin) (EC 3.4.23.-); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase); Integrase (IN)]
Length = 1124
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 VSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIK 58
+ L E+ ++LE ++K P+ +PW PV +KKK G R+ ID+R+LNK+T K
Sbjct: 187 IEALTEIVERLEREGKVKRADPN-NPWNTPVFAIKKKSGKWRMLIDFRELNKLTEK 241
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 46.2 bits (108), Expect = 4e-04
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLV----KKKDGSMRLRIDYRQLNKVTIKNRYLL 63
E KQ+++L+++K +PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNL 320
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 46.2 bits (108), Expect = 4e-04
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLV----KKKDGSMRLRIDYRQLNKVTIKNRYLL 63
E KQ+++L+++K +PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNL 320
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.8 bits (107), Expect = 5e-04
Identities = 22/60 (36%), Positives = 38/60 (62%), Gaps = 4/60 (6%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLV----KKKDGSMRLRIDYRQLNKVTIKNRYLL 63
E KQ+++L+++K +PS SP AP LV +K+ G R+ ++Y+ +NK T+ + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNL 320
>POL_FIVPE (P16088) Pol polyprotein [Contains: Protease
(Retropepsin) (EC 3.4.23.-); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase); Integrase (IN)]
Length = 1124
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 VSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIK 58
+ L E+ ++LE ++K S +PW PV +KKK G R+ ID+R+LNK+T K
Sbjct: 187 IEALTEIVERLEKEGKVKR-ADSNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTEK 241
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 45.4 bits (106), Expect = 7e-04
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLV----KKKDGSMRLRIDYRQLNKVTIKNRY 61
E KQ+++L+++K +PS SP AP LV +K+ G R+ ++Y+ +NK T+ + Y
Sbjct: 256 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAY 313
>POL_FIVT2 (P31822) Pol polyprotein [Contains: Protease
(Retropepsin) (EC 3.4.23.-); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase); Integrase (IN)]
Length = 1124
Score = 45.1 bits (105), Expect = 9e-04
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 VSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIK 58
+ L ++ ++LE ++K P+ +PW PV +KKK G R+ ID+R LNK+T K
Sbjct: 186 IEALTDIVERLESEGKVKRADPN-NPWNTPVFAIKKKSGKWRMLIDFRVLNKLTDK 240
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 44.7 bits (104), Expect = 0.001
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 3 VSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKK-----DGSMRLRIDYRQLNKVTI 57
V+ E+++Q+++L++ RPS SP+ +P+ +V KK + R+ +D+++LN VTI
Sbjct: 133 VNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTI 192
Query: 58 KNRYLLREL 66
+ Y + ++
Sbjct: 193 PDTYPIPDI 201
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 44.7 bits (104), Expect = 0.001
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLV-KKKDGS----MRLRIDYRQLNKVTIKNRY 61
E++ Q++D++ R S SP+ +P+ +V KK+D S R+ IDYR+LN++T+ +R+
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 43.5 bits (101), Expect = 0.003
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKK----DGSMRLRIDYRQLNKVTIKNRYLL 63
E KQ+++L+++K +PS SP AP LV + G+ R+ ++Y+ +NK T+ + Y L
Sbjct: 262 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNL 321
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 42.7 bits (99), Expect = 0.004
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 8 ELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSM-----RLRIDYRQLNKVTIKNRY 61
E++ Q+++++ R S SP+ +P +V KK + R+ IDYR+LN++TI +RY
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRY 279
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 42.4 bits (98), Expect = 0.006
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 2 SVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKK----KDGSMRLRIDYRQLNKVTI 57
++ ++ E K++ EDL++ R S SP AP V+ K G R+ I+Y+++N+ TI
Sbjct: 212 TIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATI 271
Query: 58 KNRYLL 63
+ Y L
Sbjct: 272 GDSYKL 277
>POL_IPMA (P11368) Putative Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT)]
Length = 867
Score = 42.4 bits (98), Expect = 0.006
Identities = 18/54 (33%), Positives = 32/54 (58%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNK 54
+S +L + + +E+ +++ PS SPW P+ ++KKK G RL D R +N+
Sbjct: 36 LSSEKLEAVIQLVEEQLKLGHIDPSTSPWNTPIFVIKKKSGKWRLLHDLRPINE 89
>POL_SMRVH (P03364) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 888
Score = 42.0 bits (97), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 24 PSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTI 57
P+ SPW P+ ++KKK GS RL D R +NKV +
Sbjct: 59 PTNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMV 92
>POL_IPHA (P04026) Putative Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT)]
Length = 863
Score = 41.2 bits (95), Expect = 0.013
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLN 53
+S +L + + +++ + PS SPW P+ ++KKK G RL D R +N
Sbjct: 25 LSSEKLEAVTRLVQEQERLGHLEPSTSPWNTPIFVIKKKSGKWRLLHDLRAIN 77
>M850_ARATH (P92522) Hypothetical mitochondrial protein AtMg00850
(ORF107e)
Length = 107
Score = 41.2 bits (95), Expect = 0.013
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 9 LKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDG 41
LK L +++E + +PS+SP+ +PVLLV+KKDG
Sbjct: 45 LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDG 77
>POL_JSRV (P31623) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 870
Score = 39.7 bits (91), Expect = 0.037
Identities = 15/54 (27%), Positives = 33/54 (60%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNK 54
++ +L+ ++ +++ + + PS S W +P+ ++KKK G RL D R++N+
Sbjct: 39 LTQEKLSAAQQLVQEQLRLGHIEPSTSAWNSPIFVIKKKSGKWRLLQDLRKVNE 92
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 39.7 bits (91), Expect = 0.037
Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 8/67 (11%)
Query: 1 MSVSELAELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKK------DGSMRLRIDYRQLNK 54
M VS+ + +++ L++ RPS SP+ +P +V KK + + RL ID+R+LN+
Sbjct: 191 MGVSDF--VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNE 248
Query: 55 VTIKNRY 61
TI +RY
Sbjct: 249 KTIPDRY 255
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.366 0.163 0.618
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,198,529
Number of Sequences: 164201
Number of extensions: 2823714
Number of successful extensions: 13953
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13870
Number of HSP's gapped (non-prelim): 99
length of query: 921
length of database: 59,974,054
effective HSP length: 119
effective length of query: 802
effective length of database: 40,434,135
effective search space: 32428176270
effective search space used: 32428176270
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 71 (32.0 bits)
Medicago: description of AC137553.4