BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137546.6 - phase: 0
(181 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ZF59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger... 32 0.81
RIR2_DICDI (P42521) Ribonucleoside-diphosphate reductase small c... 30 2.3
DRI_DROME (Q24573) Dead ringer protein (Retained protein) 30 4.0
CD97_MOUSE (Q9Z0M6) CD97 antigen precursor 30 4.0
CC12_SCHPO (Q10059) Cell division control protein 12 30 4.0
T1RH_METJA (Q60295) Putative type I restriction enzyme MjaXP R p... 29 5.2
RIR2_SWPVK (P32209) Ribonucleoside-diphosphate reductase small c... 29 6.8
ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (... 28 8.9
>ZF59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger
protein Mfg-2) (Fragment)
Length = 406
Score = 32.0 bits (71), Expect = 0.81
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 10/55 (18%)
Query: 49 GKALINTLMLNHQLYHSS---FTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRR 100
GK+L NTL+++HQ HS F C+ +F+ P + ++ + H+S+R
Sbjct: 287 GKSLANTLLIHHQKSHSGERPFECKECGKAFLLPSQLN-------SHKIVHTSKR 334
>RIR2_DICDI (P42521) Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase)
Length = 338
Score = 30.4 bits (67), Expect = 2.3
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 19 RVLLFIIRKGIAKSKTMVHLNLILKRGKLAGKALINTLMLNHQLYHSSFTC-------RS 71
R++ F +GI S + + + KRG + G N L+ + H F C R
Sbjct: 166 RLVAFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRK 225
Query: 72 DNNSFIS-------PCEYEFSCRNTPANPLRHSSRRFSK 103
+ I CE EF C + P + + +SR S+
Sbjct: 226 LDPKVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQ 264
>DRI_DROME (Q24573) Dead ringer protein (Retained protein)
Length = 911
Score = 29.6 bits (65), Expect = 4.0
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 39 NLILKRGKLAG-------KALINTLMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPA 91
NL++ RG L + +I L L + ++FT R+ ++ P E E +TPA
Sbjct: 332 NLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPA 391
Query: 92 NPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQKV 124
+ RR + + M+N + + +
Sbjct: 392 ELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPI 424
>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor
Length = 818
Score = 29.6 bits (65), Expect = 4.0
Identities = 13/42 (30%), Positives = 27/42 (63%)
Query: 1 MEIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLIL 42
+E+ + G++ + ++ +L F++ K I S+TMVHL+L +
Sbjct: 529 LELITKVGLLLSLICLLLCILTFLLVKPIQSSRTMVHLHLCI 570
>CC12_SCHPO (Q10059) Cell division control protein 12
Length = 1841
Score = 29.6 bits (65), Expect = 4.0
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 6/86 (6%)
Query: 26 RKGIAKSKTMVHLNLILKRGKLAGKALINTLMLNHQLYHSSFTCRSDNNSFISPCEYEFS 85
+KG SK N +R +G+ + ++ +LN + S RS + +F P E S
Sbjct: 1499 KKGEVSSKAKKGYNYEKRR---SGRQVSDSYVLNKNSKNKSNKGRSASYTFSDPSSLEDS 1555
Query: 86 CRNTPANPLRHSSRRF-SKSRRQRHN 110
R P N RRF SKSRR N
Sbjct: 1556 NRQKPFN--GEKFRRFSSKSRRGSQN 1579
>T1RH_METJA (Q60295) Putative type I restriction enzyme MjaXP R
protein (EC 3.1.21.3)
Length = 1042
Score = 29.3 bits (64), Expect = 5.2
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 27 KGIAKSKTMV-HLNLILKRGKLAGKALI---NTLMLNHQLYHSSFTCRSDNNSFISPCEY 82
+G KS TM+ + LK+ +L L+ + L L+ QLY+ + S+ S E
Sbjct: 338 QGTGKSITMLFYAKKALKQKELNYPLLVFLTDRLELDEQLYNVFSSVFSEAERAESIAEL 397
Query: 83 EFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNNIAV 121
+ + TP + + ++F + + H F NNI +
Sbjct: 398 QELIKKTPGGIIFATIQKFGRKSKDEHYPFLTDRNNIII 436
>RIR2_SWPVK (P32209) Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase)
Length = 274
Score = 28.9 bits (63), Expect = 6.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 5 ARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILKRGKLAGKALINTLMLNHQLYH 64
AR+ + + K++ RV+ F +GI S + + I KRG + G N L+ + H
Sbjct: 142 ARKWISSNKVYGE-RVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLH 200
Query: 65 SSFTC 69
F C
Sbjct: 201 CDFAC 205
>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two
pore domain potassium channel Ork1)
Length = 1001
Score = 28.5 bits (62), Expect = 8.9
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 73 NNSFISPCEYEFSCRNTPANPLRHSSRRFS------------KSRRQRHNDFSIMNNNIA 120
++S I E+ FS N +P R +R S + R HN+++ +N
Sbjct: 429 SDSQILASEWSFSTVNEFTSPRRPRARACSDFNLEAPRWQSERPLRSSHNEWTWSGDNQQ 488
Query: 121 VQKVFIEMMLNNEKVEAVANSP---LAPFTLEDE 151
+Q+ F + ++ ANS L P LE++
Sbjct: 489 IQEAFNQRYKGQQRANGAANSTMVHLEPDALEEQ 522
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,178,627
Number of Sequences: 164201
Number of extensions: 719921
Number of successful extensions: 1648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 10
length of query: 181
length of database: 59,974,054
effective HSP length: 103
effective length of query: 78
effective length of database: 43,061,351
effective search space: 3358785378
effective search space used: 3358785378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC137546.6