BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137510.5 - phase: 0
(1519 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 352 3e-96
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 347 2e-94
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 187 2e-46
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 163 3e-39
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 107 2e-22
YMU0_YEAST (Q04670) Transposon Ty1 protein B 97 4e-19
YME4_YEAST (Q04711) Transposon Ty1 protein B 97 4e-19
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 96 8e-19
YMD9_YEAST (Q03434) Transposon Ty1 protein B 94 3e-18
YMT5_YEAST (Q04214) Transposon Ty1 protein B 92 1e-17
YJZ7_YEAST (P47098) Transposon Ty1 protein B 91 2e-17
YJZ9_YEAST (P47100) Transposon Ty1 protein B 91 3e-17
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 84 3e-15
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 80 4e-14
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 50 5e-05
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 47 4e-04
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 40 0.037
NOA1_MOUSE (Q9CY66) Nucleolar protein family A member 1 (snoRNP ... 40 0.037
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 39 0.14
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 38 0.24
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 352 bits (904), Expect = 3e-96
Identities = 201/512 (39%), Positives = 293/512 (56%), Gaps = 11/512 (2%)
Query: 990 PNNFKEAV---KDSGWRDAMRNEIQALEDNETWVMEKLPPGKKALGSKWVYKIKHHSDGS 1046
PN+F E S W +A+ E+ A + N TW + K P K + S+WV+ +K++ G+
Sbjct: 891 PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950
Query: 1047 IERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVRTFLAVAAIKKWEVHQMDVHNAFLHG 1106
R KARLV G Q IDY+ETFAPVA++ + R L++ +VHQMDV AFL+G
Sbjct: 951 PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1010
Query: 1107 DLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSYSDYS 1166
L+EE+YM++P G N VC+L K++YGLKQA RCWF ALK FV S D
Sbjct: 1011 TLKEEIYMRLPQGISCNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRC 1069
Query: 1167 LFTLHRGEIQIN--VLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVLKYFLGLEVA 1224
++ L +G I N VL+YVDD++IA D+ + FK YL F M DL +K+F+G+ +
Sbjct: 1070 IYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1129
Query: 1225 RNHEGIYLCQRKYALEIIDETGLLGAKPADFPMEQHHKLALVSGKPLEDPEPYRRLIGRL 1284
+ IYL Q Y +I+ + + P+ L++ + P R LIG L
Sbjct: 1130 MQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDE-DCNTPCRSLIGCL 1188
Query: 1285 IYLSV-TRPDLAYSVHILSQFMQKPCEEHWEAALRVVRYLKKHPGQGILLRSD--SELKL 1341
+Y+ + TRPDL +V+ILS++ K E W+ RV+RYLK ++ + + E K+
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248
Query: 1342 EGWCDSDWASCPLTRRSLTGWVV-LLDLSPVSWKTKKQPTVSRSSAEAEYRSMAMTTCEL 1400
G+ DSDWA + R+S TG++ + D + + W TK+Q +V+ SS EAEY ++ E
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308
Query: 1401 KWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAGIIC 1460
WLK LL + + +++Y D++ + IA NP H+R KHI+ HF R+ V +IC
Sbjct: 1309 LWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVIC 1368
Query: 1461 PLYVPTSVQLADIFTKALGKAQFEFLLRKLGI 1492
Y+PT QLADIFTK L A+F L KLG+
Sbjct: 1369 LEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
Score = 157 bits (398), Expect = 2e-37
Identities = 128/430 (29%), Positives = 205/430 (46%), Gaps = 36/430 (8%)
Query: 392 NDISWIIDTGASHHVTGNFSCLINGKRITNTPVGLPNGKDAT---AIQEGSVIL--DGGL 446
++ +++D+GAS H+ + S + + P+ + K A + G V L D +
Sbjct: 285 DNCGFVLDSGASDHLINDESLYTDSVEVV-PPLKIAVAKQGEFIYATKRGIVRLRNDHEI 343
Query: 447 RLNNVLFVPQLTCNLISVTQLIDDSNCIVQFTNALCVIQDRTTRTLIGAGERIDGLYFFR 506
L +VLF + NL+SV +L ++ ++F + I + +G
Sbjct: 344 TLEDVLFCKEAAGNLMSVKRL-QEAGMSIEFDKSGVTISKNGLMVVKNSG-------MLN 395
Query: 507 GVPKV----HALMVEGDSAMDLWHKRLGHPSEKVLKFIPHVSQHSRSK--NNRP-----C 555
VP + +++ + + LWH+R GH S+ L I + S NN C
Sbjct: 396 NVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEIC 455
Query: 556 DVCPRAKQHRDSFPLSENNA---ASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAV 612
+ C KQ R F ++ LF +VH D+ G + Y++ V+ ++
Sbjct: 456 EPCLNGKQARLPFKQLKDKTHIKRPLF-VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYC 514
Query: 613 WVYLLCNKTEIETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETS 670
YL+ K+++ +MF +FVA + F+ K+ + DNG E+ N +R + GI + +
Sbjct: 515 VTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLT 574
Query: 671 CVGTPQQNGRVERKHQHIMNVARALRFQGHLPMQFWGECVLTACYLINRTPSSVL--NYK 728
TPQ NG ER + I AR + L FWGE VLTA YLINR PS L + K
Sbjct: 575 VPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSK 634
Query: 729 TPYEKLFGKVPKFDNMKIFGCLCYAHNQRRDGDKFASRSRKCIFVGYPYGKKGWKLYDLE 788
TPYE K P ++++FG Y H + + G KF +S K IFVGY G+KL+D
Sbjct: 635 TPYEMWHNKKPYLKHLRVFGATVYVHIKNKQG-KFDDKSFKSIFVGYE--PNGFKLWDAV 691
Query: 789 SKEYIVSRDV 798
++++IV+RDV
Sbjct: 692 NEKFIVARDV 701
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 347 bits (889), Expect = 2e-94
Identities = 198/523 (37%), Positives = 310/523 (58%), Gaps = 16/523 (3%)
Query: 984 VTAGKEPNNFKEAV---KDSGWRDAMRNEIQALEDNETWVMEKLPPGKKALGSKWVYKIK 1040
++ +EP + KE + + + AM+ E+++L+ N T+ + +LP GK+ L KWV+K+K
Sbjct: 805 ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK 864
Query: 1041 HHSDGSIERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVRTFLAVAAIKKWEVHQMDVH 1100
D + R KARLVV G Q +GID+DE F+PV KM ++RT L++AA EV Q+DV
Sbjct: 865 KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 924
Query: 1101 NAFLHGDLEEEVYMKVPPGFKNT-DPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFV 1159
AFLHGDLEEE+YM+ P GF+ ++VC+L KSLYGLKQAPR W+ K + +K ++
Sbjct: 925 TAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYL 984
Query: 1160 QSYSDYSLFTLHRGEIQ-INVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVLKYF 1218
++YSD ++ E I +L+YVDD++I G D + K L F MKDLG +
Sbjct: 985 KTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1044
Query: 1219 LGLEVARNHEG--IYLCQRKYALEIIDETGLLGAKPADFPMEQHHKLA------LVSGKP 1270
LG+++ R ++L Q KY +++ + AKP P+ H KL+ V K
Sbjct: 1045 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG 1104
Query: 1271 LEDPEPYRRLIGRLIYLSV-TRPDLAYSVHILSQFMQKPCEEHWEAALRVVRYLKKHPGQ 1329
PY +G L+Y V TRPD+A++V ++S+F++ P +EHWEA ++RYL+ G
Sbjct: 1105 NMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGD 1164
Query: 1330 GILLRSDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSWKTKKQPTVSRSSAEAE 1389
L S+ L+G+ D+D A R+S TG++ +SW++K Q V+ S+ EAE
Sbjct: 1165 -CLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223
Query: 1390 YRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHF 1449
Y + T E+ WLK+ L +LG+ H + +YCDS+SA+ +++N ++H RTKHI+ H+
Sbjct: 1224 YIAATETGKEMIWLKRFLQELGL-HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1282
Query: 1450 VRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRKLGI 1492
+R+ V + L + T+ AD+ TK + + +FE +G+
Sbjct: 1283 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
Score = 237 bits (604), Expect = 2e-61
Identities = 203/777 (26%), Positives = 324/777 (41%), Gaps = 106/777 (13%)
Query: 49 YDEWSRAIRTSFQAKRKYGFVEGKIPKPTTPEKLEDWKAVQSMLIAWLLNTIEPSLRSTL 108
+ W R +R + + ++ KP T K EDW + + + + + + +
Sbjct: 17 FSTWQRRMRDLLIQQGLHKVLDVDSKKPDTM-KAEDWADLDERAASAIRLHLSDDVVNNI 75
Query: 109 SYYDDAESLWTHLKQRFCVVNGARICQLKASLGECKQGKGEEVSAYFGRLSRIWDELVTY 168
D A +WT L+ + LK L +G ++ +++ L+T
Sbjct: 76 IDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLN----VFNGLITQ 131
Query: 169 VKKPTCKCEGCICDINKQVTDFSAEDYLHHFLMGLDGAYATIRSNLLSQDPLPNIDQAYQ 228
+ K E ED L L +Y + + +L +
Sbjct: 132 LANLGVKIE--------------EEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTS 177
Query: 229 RVIQDERLR-----QGEYSIQQNRDNVMAFKV----APDTRGKSKLVDNSD-KFCTHCNR 278
++ +E++R QG+ I + R RGKSK S + C +CN+
Sbjct: 178 ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 237
Query: 279 EGHDERTCFQIHGFPEWWGDRPRGGRGSGRGGATTGRDTTGRSGGRGRGTYNALARANKA 338
GH +R C PR G+G T+G+ + + N + N+
Sbjct: 238 PGHFKRDC-----------PNPRKGKGE-----TSGQKNDDNTAAMVQNNDNVVLFINE- 280
Query: 339 TTSSRSIGGNSGQSHAPPHSSEAAGISGITPAQWQQILDALNISKTKDRLHGKNDISWII 398
E +SG + W++
Sbjct: 281 -------------------EEECMHLSG-------------------------PESEWVV 296
Query: 399 DTGASHHVT--GNFSCLINGKRITNTPVGLPNGKDATAIQEGSVILDGG--LRLNNVLFV 454
DT ASHH T + C +G + I + + + G L L +V V
Sbjct: 297 DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 356
Query: 455 PQLTCNLISVTQLIDDSNCIVQFTNALCVIQDRTTR--TLIGAGERIDGLYFFRG-VPKV 511
P L NLIS L D + + + R T+ +I G LY + +
Sbjct: 357 PDLRMNLISGIALDRDG-----YESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQG 411
Query: 512 HALMVEGDSAMDLWHKRLGHPSEKVLKFIPHVSQHSRSKNN--RPCDVCPRAKQHRDSFP 569
+ + ++DLWHKR+GH SEK L+ + S S +K +PCD C KQHR SF
Sbjct: 412 ELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQ 471
Query: 570 LSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTEIETMFLN 629
S ++ +LV+ D+ G S G +Y++T ++D SR +WVY+L K ++ +F
Sbjct: 472 TSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQK 531
Query: 630 FVAFVDRQFDKKIKKVRSDNGTEFNC--LRDYFFNNGIVFETSCVGTPQQNGRVERKHQH 687
F A V+R+ +K+K++RSDNG E+ +Y ++GI E + GTPQ NG ER ++
Sbjct: 532 FHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRT 591
Query: 688 IMNVARALRFQGHLPMQFWGECVLTACYLINRTPSSVLNYKTPYEKLFGKVPKFDNMKIF 747
I+ R++ LP FWGE V TACYLINR+PS L ++ P K + ++K+F
Sbjct: 592 IVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVF 651
Query: 748 GCLCYAHNQRRDGDKFASRSRKCIFVGYPYGKKGWKLYDLESKEYIVSRDVKFYEHE 804
GC +AH + K +S CIF+GY + G++L+D K+ I SRDV F E E
Sbjct: 652 GCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESE 708
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 187 bits (474), Expect = 2e-46
Identities = 90/224 (40%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
Query: 1179 VLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVLKYFLGLEVARNHEGIYLCQRKYA 1238
+L+YVDD+++ G+ L + L F MKDLG + YFLG+++ + G++L Q KYA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1239 LEIIDETGLLGAKPADFPMEQHHKLALVSGKPLEDPEPYRRLIGRLIYLSVTRPDLAYSV 1298
+I++ G+L KP P+ ++ + K DP +R ++G L YL++TRPD++Y+V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 1299 HILSQFMQKPCEEHWEAALRVVRYLKKHPGQGILLRSDSELKLEGWCDSDWASCPLTRRS 1358
+I+ Q M +P ++ RV+RY+K G+ + +S+L ++ +CDSDWA C TRRS
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 1359 LTGWVVLLDLSPVSWKTKKQPTVSRSSAEAEYRSMAMTTCELKW 1402
TG+ L + +SW K+QPTVSRSS E EYR++A+T EL W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 163 bits (413), Expect = 3e-39
Identities = 104/308 (33%), Positives = 165/308 (52%), Gaps = 4/308 (1%)
Query: 1097 MDVHNAFLHGDLEEEVYMKVPPGFKNT-DPNLVCRLKKSLYGLKQAPRCWFAKLVTALKR 1155
MDV AFL+ ++E +Y+K PPGF N +P+ V L +YGLKQAP W + LK+
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1156 YGFVQSYSDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVL 1215
GF + ++ L+ + I + VYVDDL++A K L + MKDLG +
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1216 KYFLGLEVARNHEG-IYLCQRKYALEIIDETGLLGAKPADFPMEQHHKLALVSGKPLEDP 1274
FLGL + ++ G I L + Y + E+ + K P+ L + L+D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1275 EPYRRLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAALRVVRYLKKHPGQGILL 1333
PY+ ++G+L++ + T RPD++Y V +LS+F+++P H E+A RV+RYL +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1334 RSDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSWKTKK-QPTVSRSSAEAEYRS 1392
RS S++ L +CD+ + S G+V LL +PV+W +KK + + S EAEY +
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1393 MAMTTCEL 1400
+ T E+
Sbjct: 301 ASETVMEI 308
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 107 bits (268), Expect = 2e-22
Identities = 52/103 (50%), Positives = 69/103 (66%)
Query: 985 TAGKEPNNFKEAVKDSGWRDAMRNEIQALEDNETWVMEKLPPGKKALGSKWVYKIKHHSD 1044
T KEP + A+KD GW AM+ E+ AL N+TW++ P + LG KWV+K K HSD
Sbjct: 23 TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82
Query: 1045 GSIERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVRTFLAVA 1087
G+++RLKARLV G HQ EGI + ET++PV + T+RT L VA
Sbjct: 83 GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 96.7 bits (239), Expect = 4e-19
Identities = 126/538 (23%), Positives = 234/538 (43%), Gaps = 69/538 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + A E+ L +TW ++ + P K+ + S +++ K DG+
Sbjct: 815 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDP-KRVINSMFIFNRKR--DGTH 871
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ P + TV T L++A + + Q+D+ +A
Sbjct: 872 ---KARFVARGD-----IQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 923
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKSLYGLKQ+ W+ + + L + ++
Sbjct: 924 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+I+ D+ A K L + K + + ++
Sbjct: 982 RGWSCVFKNS---QVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQ 1038
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1039 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1090
Query: 1271 ------LEDPE------PYRRLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE+ + ++LIG Y+ R DL Y ++ L+Q + P ++ +
Sbjct: 1091 DQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTY 1150
Query: 1318 RVVRYLKKHPGQGILLRSDSEL----KLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1151 ELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPY-YKSQIGNIYLLNGKVIGG 1209
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSH-SQGMQLYCDSKSALH-IA 1431
K+ K S+ EAE +++ + L L L+ +L ++G L DSKS + I
Sbjct: 1210 KSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKG--LLTDSKSTISIII 1267
Query: 1432 QNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
N R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 563 QHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE 622
+H L N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E
Sbjct: 222 RHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRRE 281
Query: 623 --IETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQN 678
I +F +AF+ QF + ++ D G+E+ L + NGI + + +
Sbjct: 282 DSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAH 341
Query: 679 GRVERKHQHIMNVARALRFQGHLPMQFW 706
G ER ++ +++ R LP W
Sbjct: 342 GVAERLNRTLLDDCRTQLQCSGLPNHLW 369
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 96.7 bits (239), Expect = 4e-19
Identities = 128/538 (23%), Positives = 235/538 (42%), Gaps = 69/538 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + +A E+ L TW +K + P K+ + S +++ K DG+
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDP-KRVINSMFIFNRKR--DGTH 871
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ + TV T L++A + + Q+D+ +A
Sbjct: 872 ---KARFVARGD-----IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 923
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKSLYGLKQ+ W+ + + L + ++
Sbjct: 924 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+I+ D+ A K L + K + + ++
Sbjct: 982 RGWSCVFKNS---QVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQ 1038
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1039 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1090
Query: 1271 ----LE-DPEPYR-------RLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE D + Y+ +LIG Y+ R DL Y ++ L+Q + P + +
Sbjct: 1091 DQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTY 1150
Query: 1318 RVVRYLKKHPGQGILLR----SDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1151 ELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPY-YKSQIGNIYLLNGKVIGG 1209
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSH-SQGMQLYCDSKSALH-IA 1431
K+ K S+ EAE +++ + L L L+ +L ++G L DSKS + I
Sbjct: 1210 KSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKG--LLTDSKSTISIII 1267
Query: 1432 QNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
N R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 563 QHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE 622
+H L N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E
Sbjct: 222 RHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRRE 281
Query: 623 --IETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQN 678
I +F +AF+ QF + ++ D G+E+ L + NGI + + +
Sbjct: 282 DSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAH 341
Query: 679 GRVERKHQHIMNVARALRFQGHLPMQFW 706
G ER ++ +++ R LP W
Sbjct: 342 GVAERLNRTLLDDCRTQLQCSGLPNHLW 369
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 95.9 bits (237), Expect = 8e-19
Identities = 125/522 (23%), Positives = 222/522 (41%), Gaps = 57/522 (10%)
Query: 1004 DAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSIERLKARLVVF 1057
+A EI L TW K + P KK + S +++ K DG+ KAR V
Sbjct: 1267 EAYHKEISQLLKMNTWDTNKYYDRNDIDP-KKVINSMFIFNKKR--DGTH---KARFVAR 1320
Query: 1058 GHHQIEGIDYDETFAPVAKMVTVRTFLAVAAIKKWEVHQMDVHNAFLHGDLEEEVYMKVP 1117
G Q + + + T L++A + + Q+D+ +A+L+ D++EE+Y++ P
Sbjct: 1321 GDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPP 1380
Query: 1118 PGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSYSDYSLFTLHRGEIQI 1177
P D L RL+KSLYGLKQ+ W+ + + L +Q +S + Q+
Sbjct: 1381 PHLGLNDKLL--RLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNS---QV 1435
Query: 1178 NVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LKY-FLGLEVARNHEGI 1230
+ ++VDD+I+ D+ A K L + K + + ++Y LGLE+
Sbjct: 1436 TICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK------ 1489
Query: 1231 YLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP--------LE-DPEPYR-- 1278
QR +++ E L P + P+ K G+P LE D + Y+
Sbjct: 1490 --YQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEK 1547
Query: 1279 -----RLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAALRVVRYLKKHPGQGIL 1332
+LIG Y+ R DL Y ++ L+Q + P + + +++++ + ++
Sbjct: 1548 VHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLI 1607
Query: 1333 LRSDS----ELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSWKTKKQPTVSRSSAEA 1388
+ + KL D+ + + P +S G + LL+ + K+ K S+ EA
Sbjct: 1608 WHKNKPTKPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEA 1666
Query: 1389 EYRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHE-RTKHIEADC 1447
E +++ L L L+ +L L DS+S + I ++ + R +
Sbjct: 1667 EIHAVSEAIPLLNNLSHLVQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKA 1725
Query: 1448 HFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
+RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1726 MRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
Score = 66.2 bits (160), Expect = 6e-10
Identities = 92/440 (20%), Positives = 176/440 (39%), Gaps = 57/440 (12%)
Query: 312 TTGRDTTGRSGGRGRGTYNALARANKATTSSRSIGGNSGQSHAPPHSSE-AAGISGITPA 370
TT T R+ R + A+A+ TSS+ N+ + SS+ + + ++
Sbjct: 373 TTNTKVTTRNYQRTNSSKPRAAKAHNIATSSKFSRVNNDHINESTVSSQYLSDDNELSLG 432
Query: 371 QWQQILDALNISKTKDRLHGKNDISWIIDTGAS----------HHVTGNFSCLINGKRIT 420
Q Q+ + + D L +ID+GAS HH T N I +
Sbjct: 433 QQQKESKPTHTIDSNDELPDH----LLIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQ 488
Query: 421 NTPVGLPNGKDATAIQEGSVILDGGLRLN-NVLFVPQLTCNLISVTQLIDDSNCIVQFTN 479
+ P+ AI G + + L P + +L+S+++L + + N
Sbjct: 489 DIPIN--------AIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN 540
Query: 480 ALCVIQDRTTRTLIGAGERIDGLYFFRG-------VPKVHALMVEGDSAMD-----LWHK 527
L +R+ T++ + Y+ + K+ V +++ L H+
Sbjct: 541 TL----ERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHR 596
Query: 528 RLGHPS----EKVLK--FIPHVSQHSRSKNNRPCDVCP-----RAKQHRD--SFPLSENN 574
LGH + +K LK + ++ + +N CP ++ +HR L
Sbjct: 597 MLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQE 656
Query: 575 AASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE--IETMFLNFVA 632
+ F+ +H D++G Y+++ ++ +R WVY L ++ E I +F + +A
Sbjct: 657 SYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILA 716
Query: 633 FVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQNGRVERKHQHIMN 690
F+ QF+ ++ ++ D G+E+ L +F N GI + + +G ER ++ ++N
Sbjct: 717 FIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLN 776
Query: 691 VARALRFQGHLPMQFWGECV 710
R L LP W V
Sbjct: 777 DCRTLLHCSGLPNHLWFSAV 796
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 94.0 bits (232), Expect = 3e-18
Identities = 124/537 (23%), Positives = 235/537 (43%), Gaps = 67/537 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + +A E+ L +TW ++ + P K+ + S +++ K DG+
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--DGTH 871
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ + TV T L++A + + Q+D+ +A
Sbjct: 872 ---KARFVARGD-----IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 923
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKSLYGLKQ+ W+ + + L + ++
Sbjct: 924 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+I+ D+ A K L + K + + ++
Sbjct: 982 RGWSCVFKNS---QVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQ 1038
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1039 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1090
Query: 1271 ----LE-DPEPYR-------RLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE D + Y+ +LIG Y+ R DL Y ++ L+Q + P + +
Sbjct: 1091 DQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTY 1150
Query: 1318 RVVRYLKKHPGQGILLR----SDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1151 ELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPY-YKSQIGNIYLLNGKVIGG 1209
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQN 1433
K+ K S+ EAE +++ + L L L+ +L L DS+S + I ++
Sbjct: 1210 KSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKS 1268
Query: 1434 PVFHE-RTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
+ R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1269 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 54.3 bits (129), Expect = 3e-06
Identities = 40/198 (20%), Positives = 86/198 (43%), Gaps = 17/198 (8%)
Query: 526 HKRLGHPSEKVLKF------IPHVSQHSRSKNNRPCDVCP-----RAKQHRD--SFPLSE 572
H+ L H + + +++ I + ++ +++ CP ++ +HR L
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 573 NNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE--IETMFLNF 630
N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E I +F
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 631 VAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQNGRVERKHQHI 688
+AF+ QF + ++ D G+E+ L + NGI + + +G ER ++ +
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 689 MNVARALRFQGHLPMQFW 706
++ R LP W
Sbjct: 352 LDDCRTQLQCSGLPNHLW 369
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 91.7 bits (226), Expect = 1e-17
Identities = 123/538 (22%), Positives = 235/538 (42%), Gaps = 69/538 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + +A E+ L +TW +K + P K+ + S +++ K DG+
Sbjct: 815 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDP-KRVINSMFIFNRKR--DGTH 871
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ + TV T L++A + + Q+D+ +A
Sbjct: 872 ---KARFVARGD-----IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 923
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKSLYGLKQ+ W+ + + L + ++
Sbjct: 924 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+++ ++ + K L + + K + + ++
Sbjct: 982 RGWSCVFENS---QVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQ 1038
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1039 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1090
Query: 1271 ------LEDPE------PYRRLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE+ + ++LIG Y+ R DL Y ++ L+Q + P ++ +
Sbjct: 1091 DQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTY 1150
Query: 1318 RVVRYLKKHPGQGILLRSDSEL----KLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1151 ELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPY-YKSQIGNIYLLNGKVIGG 1209
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSH-SQGMQLYCDSKSALH-IA 1431
K+ K S+ EAE +++ + L L L+ +L ++G L DSKS + I
Sbjct: 1210 KSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKG--LLTDSKSTISIII 1267
Query: 1432 QNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
N R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 563 QHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE 622
+H L N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E
Sbjct: 222 RHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRRE 281
Query: 623 --IETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQN 678
I +F +AF+ QF + ++ D G+E+ L + NGI + + +
Sbjct: 282 DSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAH 341
Query: 679 GRVERKHQHIMNVARALRFQGHLPMQFW 706
G ER ++ +++ R LP W
Sbjct: 342 GVAERLNRTLLDDCRTQLQCSGLPNHLW 369
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 91.3 bits (225), Expect = 2e-17
Identities = 123/537 (22%), Positives = 234/537 (42%), Gaps = 67/537 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + +A E+ L +TW ++ + P K+ + S +++ K DG+
Sbjct: 1242 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--DGTH 1298
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ + TV T L++A + + Q+D+ +A
Sbjct: 1299 ---KARFVARGD-----IQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 1350
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKS YGLKQ+ W+ + + L + ++
Sbjct: 1351 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEV 1408
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+I+ D+ A K L + K + + ++
Sbjct: 1409 RGWSCVFKNS---QVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQ 1465
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1466 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1517
Query: 1271 ----LE-DPEPYR-------RLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE D + Y+ +LIG Y+ R DL Y ++ L+Q + P + +
Sbjct: 1518 DQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTY 1577
Query: 1318 RVVRYLKKHPGQGILLR----SDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1578 ELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGG 1636
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQN 1433
K+ K S+ EAE +++ + L L L+ +L L DS+S + I ++
Sbjct: 1637 KSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKS 1695
Query: 1434 PVFHE-RTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
+ R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1696 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 563 QHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE 622
+H L N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E
Sbjct: 649 RHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRRE 708
Query: 623 --IETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQN 678
I +F +AF+ QF + ++ D G+E+ L + NGI + + +
Sbjct: 709 DSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAH 768
Query: 679 GRVERKHQHIMNVARALRFQGHLPMQFW 706
G ER ++ +++ R LP W
Sbjct: 769 GVAERLNRTLLDDCRTQLQCSGLPNHLW 796
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 90.5 bits (223), Expect = 3e-17
Identities = 122/538 (22%), Positives = 235/538 (43%), Gaps = 69/538 (12%)
Query: 994 KEAVKDSGWRDAMRNEIQALEDNETWVMEK------LPPGKKALGSKWVYKIKHHSDGSI 1047
K+ + + +A E+ L +TW ++ + P K+ + S +++ K DG+
Sbjct: 1242 KDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--DGTH 1298
Query: 1048 ERLKARLVVFGHHQIEGIDYDETFAPVAKMVTVR-----TFLAVAAIKKWEVHQMDVHNA 1102
KAR V G I + +T+ + TV T L++A + + Q+D+ +A
Sbjct: 1299 ---KARFVARGD-----IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSA 1350
Query: 1103 FLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLKQAPRCWFAKLVTALKRYGFVQSY 1162
+L+ D++EE+Y++ PP D + RLKKSLYGLKQ+ W+ + + L + ++
Sbjct: 1351 YLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEV 1408
Query: 1163 SDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGV------LK 1216
+S + Q+ + ++VDD+++ ++ + K L + + K + + ++
Sbjct: 1409 RGWSCVFKNS---QVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQ 1465
Query: 1217 Y-FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKP-ADFPMEQHHKLALVSGKP---- 1270
Y LGLE+ QR +++ E L P + P+ + G+P
Sbjct: 1466 YDILGLEIK--------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYI 1517
Query: 1271 ------LEDPE------PYRRLIGRLIYLSVT-RPDLAYSVHILSQFMQKPCEEHWEAAL 1317
LE+ + ++LIG Y+ R DL Y ++ L+Q + P ++ +
Sbjct: 1518 DQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTY 1577
Query: 1318 RVVRYLKKHPGQGILLRSDSEL----KLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+++++ + ++ + KL D+ + + P +S G + LL+ +
Sbjct: 1578 ELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQPY-YKSQIGNIYLLNGKVIGG 1636
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSH-SQGMQLYCDSKSALH-IA 1431
K+ K S+ EAE +++ + L L L+ +L ++G L DSKS + I
Sbjct: 1637 KSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKG--LLTDSKSTISIII 1694
Query: 1432 QNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRK 1489
N R + +RD V + Y+ T +AD+ TK L F+ L K
Sbjct: 1695 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 563 QHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTE 622
+H L N+ F+ +H D++G Y+++ ++ ++ WVY L ++ E
Sbjct: 649 RHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRRE 708
Query: 623 --IETMFLNFVAFVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQN 678
I +F +AF+ QF + ++ D G+E+ L + NGI + + +
Sbjct: 709 DSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAH 768
Query: 679 GRVERKHQHIMNVARALRFQGHLPMQFW 706
G ER ++ +++ R LP W
Sbjct: 769 GVAERLNRTLLDDCRTQLQCSGLPNHLW 796
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 84.0 bits (206), Expect = 3e-15
Identities = 97/431 (22%), Positives = 182/431 (41%), Gaps = 28/431 (6%)
Query: 1080 VRTFLAVAAIKKWEVHQMDVHNAFLHGDLEEEVYMKVPPGFKNTDPNLVCRLKKSLYGLK 1139
++ FL +A + + +D+++AFL+ LEEE+Y+ P D V +L K+LYGLK
Sbjct: 1366 IKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP-----HDRRCVVKLNKALYGLK 1420
Query: 1140 QAPRCWFAKLVTALKRYGFVQSYSDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIF 1199
Q+P+ W L L G + Y+ + + + VYVDD +IA ++ L F
Sbjct: 1421 QSPKEWNDHLRQYLNGIGLKD--NSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEF 1478
Query: 1200 KAYLGVCFHMKDLGVL------KYFLGLEVARNHE-GIYLCQRKYALEIIDE---TGLLG 1249
L F +K G L LG+++ N G K + +D+ L
Sbjct: 1479 INKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKK 1538
Query: 1250 AKPADFPMEQHHKLALVSGKPLEDPEPYR-------RLIGRLIYL-SVTRPDLAYSVHIL 1301
+ + P +K+ E +R +L+G L Y+ R D+ ++V +
Sbjct: 1539 IRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKV 1598
Query: 1302 SQFMQKPCEEHWEAALRVVRYLKKHPGQGILLRSD--SELKLEGWCDSDWASCPLTRRSL 1359
++ + P E + ++++YL ++ GI D + K+ D+ S +S
Sbjct: 1599 ARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDASVGS-EYDAQSR 1657
Query: 1360 TGWVVLLDLSPVSWKTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSHSQGMQ 1419
G ++ ++ + + K SS EAE ++ + + LK L +LG + +
Sbjct: 1658 IGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIV 1717
Query: 1420 LYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALG 1479
+ DSK A+ + K +++ + I L + +AD+ TK +
Sbjct: 1718 MITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVS 1777
Query: 1480 KAQFEFLLRKL 1490
+ F+ ++ L
Sbjct: 1778 ASDFKRFIQVL 1788
Score = 63.9 bits (154), Expect = 3e-09
Identities = 56/208 (26%), Positives = 97/208 (45%), Gaps = 16/208 (7%)
Query: 526 HKRLGHPS-EKVLKFIPHVSQHS-----RSKNNRPCDVCPRAKQ-HRDSFPLSENNAASL 578
HKR+GH +++ I H + N C C +K R+ + S NN ++
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 579 FELVHC---DLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTEIETMFLNF---VA 632
E D++G + ++ +Y L +V++ +R NK ET+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNA-ETILAQVRKNIQ 680
Query: 633 FVDRQFDKKIKKVRSDNGTEF--NCLRDYFFNNGIVFETSCVGTPQQNGRVERKHQHIMN 690
+V+ QFD+K++++ SD GTEF + + +YF + GI + NGR ER + I+
Sbjct: 681 YVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIIT 740
Query: 691 VARALRFQGHLPMQFWGECVLTACYLIN 718
A L Q +L ++FW V +A + N
Sbjct: 741 DATTLLRQSNLRVKFWEYAVTSATNIRN 768
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 80.1 bits (196), Expect = 4e-14
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 1285 IYLSVTRPDLAYSVHILSQFMQKPCEEHWEAALRVVRYLKKHPGQGILLRSDSELKLEGW 1344
+YL++TRPDL ++V+ LSQF +A +V+ Y+K GQG+ + S+L+L+ +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1345 CDSDWASCPLTRRSLTGWVVLLDL 1368
DSDWASCP TRRS+TG+ L+ L
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPL 84
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 50.1 bits (118), Expect = 5e-05
Identities = 26/82 (31%), Positives = 43/82 (51%), Gaps = 3/82 (3%)
Query: 688 IMNVARALRFQGHLPMQFWGECVLTACYLINRTPSSVLNYKTPYEKLFGKVPKFDNMKIF 747
I+ R++ + LP F + TA ++IN+ PS+ +N+ P E F VP + ++ F
Sbjct: 5 IIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRF 64
Query: 748 GCLCYAHNQRRDGDKFASRSRK 769
GC+ Y H D K R++K
Sbjct: 65 GCVAYIH---CDEGKLKPRAKK 83
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 47.0 bits (110), Expect = 4e-04
Identities = 30/105 (28%), Positives = 52/105 (48%), Gaps = 7/105 (6%)
Query: 490 RTLIGAGERIDGLYFFRGVPKVHALMVEGDSAMD---LWHKRLGHPSEKVLKFIPHVS-- 544
RT++ G R D LY +G + + ++A D LWH RL H S++ ++ +
Sbjct: 36 RTIL-KGNRHDSLYILQGSVETGESNL-AETAKDETRLWHSRLAHMSQRGMELLVKKGFL 93
Query: 545 QHSRSKNNRPCDVCPRAKQHRDSFPLSENNAASLFELVHCDLWGS 589
S+ + + C+ C K HR +F ++ + + VH DLWG+
Sbjct: 94 DSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGA 138
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 40.4 bits (93), Expect = 0.037
Identities = 34/132 (25%), Positives = 57/132 (42%), Gaps = 9/132 (6%)
Query: 333 ARANKATTSSRSIGGNSGQSHAPPHSSEAAGISGITPAQWQQILDALNISKTKDRLHGKN 392
AR K + ++ +S P + ++ ITP W +L + + TK
Sbjct: 24 ARIFKLYPNDKTSRSSSASVAIPDYETQGQTAGQITPKSWLCMLSS-TVPATKSS----- 77
Query: 393 DISWIIDTGASHHVTGNFSCLINGKRITNTPVGLPNGKDATAIQEGSVILDGGLRLNNVL 452
WI DTG + H+ + S + R + G + G+V + G ++L++V
Sbjct: 78 --EWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNI-GTVQLHDVS 134
Query: 453 FVPQLTCNLISV 464
+VP L NLISV
Sbjct: 135 YVPDLPVNLISV 146
>NOA1_MOUSE (Q9CY66) Nucleolar protein family A member 1 (snoRNP
protein GAR1) (H/ACA ribonucleoprotein GAR1)
Length = 231
Score = 40.4 bits (93), Expect = 0.037
Identities = 23/54 (42%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Query: 300 PRGGRGSGRGGATTGRDTTGRSGGRGRGTYNALARANKATTSSRSIGGNSGQSH 353
PRGG G GRGG GR GR GGRG G + R GG G+ H
Sbjct: 179 PRGGGGGGRGGRGGGRGGGGRGGGRG-GGFRGGRGGGGGFRGGRGGGGFRGRGH 231
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 38.5 bits (88), Expect = 0.14
Identities = 39/145 (26%), Positives = 58/145 (39%), Gaps = 12/145 (8%)
Query: 595 SCGAQYYLTIVNDYSRAVWVY-LLCNKTEIETMFLNFVAFVDRQFDKKIKKVRSDNGTEF 653
S G + L +V+ + VW+Y T LN + + K + SD G F
Sbjct: 900 SNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAVP-----KVIHSDQGAAF 954
Query: 654 NC--LRDYFFNNGIVFETSCVGTPQQNGRVERKHQHIMNVARALRFQGHLPMQFWGECVL 711
D+ N GI E S PQ +G+VERK+ I + L W + +
Sbjct: 955 TSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAK---WYDLLP 1011
Query: 712 TACYLINRTPSSVLNYKTPYEKLFG 736
+N + S Y TP++ LFG
Sbjct: 1012 VVQLALNNSYSPSSKY-TPHQLLFG 1035
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 37.7 bits (86), Expect = 0.24
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 647 SDNGTEFNCLRDYFF-----NNGIVFETSCVGTPQQNGRVERKHQHIMNVARALRFQGHL 701
SDNGT+ L + F ++GI +TS V P+ NG ER + ++ +G +
Sbjct: 908 SDNGTQ---LTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSV 964
Query: 702 PMQFWGECVLTACYLINRTPSSVLNYKTPYEKLFGK 737
Q + +++ TP S LN TP E FG+
Sbjct: 965 NQQILNKFLIS----YRNTPHSALNGSTPAECHFGR 996
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,766,140
Number of Sequences: 164201
Number of extensions: 8596570
Number of successful extensions: 24339
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 23444
Number of HSP's gapped (non-prelim): 569
length of query: 1519
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1396
effective length of database: 39,777,331
effective search space: 55529154076
effective search space used: 55529154076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Medicago: description of AC137510.5