BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137081.4 - phase: 0
(325 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 117 3e-26
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 117 3e-26
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 117 3e-26
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 57 8e-08
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 56 1e-07
POL_SMSAV (P03359) Pol polyprotein [Contains: Reverse transcript... 55 2e-07
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 53 9e-07
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 53 9e-07
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 52 2e-06
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 3e-06
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 3e-06
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 3e-06
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 51 4e-06
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 51 4e-06
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 50 6e-06
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 50 6e-06
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 50 6e-06
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 50 6e-06
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 50 1e-05
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 50 1e-05
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 117 bits (294), Expect = 3e-26
Identities = 72/219 (32%), Positives = 110/219 (49%), Gaps = 7/219 (3%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1044 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTH 1103
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
H+ L++ +YNN+ HS+ M PFE ++ R L E + ET
Sbjct: 1104 PNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETI 1161
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKF 214
+ + ++E + + + K Y D + +++ EFQ GD V ++ T G KS KL P F
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSF 1218
Query: 215 IGPYQISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 252
GP+ + ++ G Y + LP + ++ FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 117 bits (294), Expect = 3e-26
Identities = 72/219 (32%), Positives = 110/219 (49%), Gaps = 7/219 (3%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1044 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTH 1103
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
H+ L++ +YNN+ HS+ M PFE ++ R L E + ET
Sbjct: 1104 PNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETI 1161
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKF 214
+ + ++E + + + K Y D + +++ EFQ GD V ++ T G KS KL P F
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSF 1218
Query: 215 IGPYQISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 252
GP+ + ++ G Y + LP + ++ FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 117 bits (294), Expect = 3e-26
Identities = 72/219 (32%), Positives = 110/219 (49%), Gaps = 7/219 (3%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1044 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTH 1103
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHETT 155
H+ L++ +YNN+ HS+ M PFE ++ R L E + ET
Sbjct: 1104 PNTWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETI 1161
Query: 156 EKVRMIREKMKASQSRQKSYHDKRRKDL-EFQEGDHVFLRVTPLTGVGRALKSRKLTPKF 214
+ + ++E + + + K Y D + +++ EFQ GD V ++ T G KS KL P F
Sbjct: 1162 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK---RTKTGFLHKSNKLAPSF 1218
Query: 215 IGPYQISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 252
GP+ + ++ G Y + LP + ++ FHVS L KY
Sbjct: 1219 AGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 56.6 bits (135), Expect = 8e-08
Identities = 55/195 (28%), Positives = 86/195 (43%), Gaps = 31/195 (15%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + SD P F ++ + L LG +L AY PQ+ GQ ER +++++ L LE
Sbjct: 936 PKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALET 995
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHET 154
GG + LPL N+ G+ P+E LYG P ESGE+ LGPD
Sbjct: 996 GGKDWVTLLPLALLRARNT-PGRFGLTPYEILYG----GPPPILESGET--LGPD----- 1043
Query: 155 TEKVRMIREKMKASQSRQKSYHDKRRKDLE---------FQEGDHVFLRVTPLTGVGRAL 205
+ ++ +KA + + D+ ++ + FQ GD V + R
Sbjct: 1044 DRFLPVLFTHLKALEIVRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLV---------RRH 1094
Query: 206 KSRKLTPKFIGPYQI 220
+ L P++ GPY +
Sbjct: 1095 RPSSLEPRWKGPYLV 1109
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/188 (28%), Positives = 81/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + SD P FTS+ +S+ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 969 PQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAA 1028
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVL--GPDLVH 152
G LPL + N+ G+ P+E LYG PL F + L P L
Sbjct: 1029 GTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPDMSELTNSPSLQA 1085
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ RE K + D+ F+ GD V++ R +++ L P
Sbjct: 1086 HLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWV---------RRHQTKNLEP 1136
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1137 RWKGPYTV 1144
>POL_SMSAV (P03359) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 294
Score = 55.1 bits (131), Expect = 2e-07
Identities = 55/195 (28%), Positives = 86/195 (43%), Gaps = 31/195 (15%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + SD P F ++ + L LG +L AY PQ+ GQ ER +++++ L LE
Sbjct: 65 PKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALET 124
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVLGPDLVHET 154
GG + LPL N+ S G+ P+E LYG P ESG + LGPD
Sbjct: 125 GGKDWVALLPLALLRAKNT-PSRFGLTPYEILYG----GPPPILESGGT--LGPD----- 172
Query: 155 TEKVRMIREKMKASQSRQKSYHDKRRKDLE---------FQEGDHVFLRVTPLTGVGRAL 205
+ ++ +KA + + D+ ++ + FQ GD V + R
Sbjct: 173 DNFLPVLFTHLKALEVVRTQIWDQIKEVYKPGTVAIPHPFQVGDQVLV---------RRH 223
Query: 206 KSRKLTPKFIGPYQI 220
+ L P++ GPY +
Sbjct: 224 RPGSLEPRWKGPYLV 238
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 53.1 bits (126), Expect = 9e-07
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I SD+ FTS + G +L S+ YHPQ+ G+ ER ++ LL ++ +
Sbjct: 943 PKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGR 1002
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTP 134
LP+++ NNSY S P + L+G TP
Sbjct: 1003 PAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 53.1 bits (126), Expect = 9e-07
Identities = 30/99 (30%), Positives = 47/99 (47%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + SD+ FTS + G +L S+ YHPQ+ G+ ER ++ LL ++ +
Sbjct: 941 PKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGR 1000
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTP 134
LP+++ NNSY S P + L+G TP
Sbjct: 1001 PAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 52.0 bits (123), Expect = 2e-06
Identities = 53/188 (28%), Positives = 81/188 (42%), Gaps = 16/188 (8%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + SD P FTS+ +S+ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 617 PQVLGSDNGPAFTSQVSQSVADLLGID-KLHCAYRPQSSGQVERMNRTIKETLTKLTLAA 675
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGESVVL--GPDLVH 152
G LPL + N+ G+ P+E LYG PL F + L P L
Sbjct: 676 GTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPDMSELTNSPSLQA 732
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ RE K + D+ F+ GD V++ R +++ L P
Sbjct: 733 HLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWV---------RRHQTKNLEP 783
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 784 RWKGPYTV 791
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 3e-06
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +++ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 974 PQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 1033
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1034 GSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMAKVTHNPSLQA 1090
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ E + + + D+ F+ GD V++ R +++ L P
Sbjct: 1091 HLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV---------RRHQTKNLEP 1141
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1142 RWKGPYTV 1149
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 3e-06
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +++ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 974 PQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 1033
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1034 GSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMAKVTHNPSLQA 1090
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ E + + + D+ F+ GD V++ R +++ L P
Sbjct: 1091 HLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV---------RRHQTKNLEP 1141
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1142 RWKGPYTV 1149
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 3e-06
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +++ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 974 PQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 1033
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1034 GSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMAKVTHNPSLQA 1090
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ E + + + D+ F+ GD V++ R +++ L P
Sbjct: 1091 HLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV---------RRHQTKNLEP 1141
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1142 RWKGPYTV 1149
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I SD P F S+ + L LG +L AY PQ+ GQ ER +++++ L LE
Sbjct: 821 PKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLET 880
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYG 128
G L + + + G+ P+E LYG
Sbjct: 881 GLKDWRRLLSLALLRARNTPNRFGLTPYEILYG 913
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 50.8 bits (120), Expect = 4e-06
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 16/194 (8%)
Query: 38 SIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGG 97
+ ++D + + L L K S+A+H QT G ER+ ++L + +R +
Sbjct: 1027 TFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKT 1086
Query: 98 ASDSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCW--FESGESVVLGPDLVHETT 155
D L + +N + P+E ++G P + S E + D E+
Sbjct: 1087 DWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESK 1146
Query: 156 EKVRM----IREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLT 211
++ + R+ ++A + + K +D + KD+E + GD V LR VG KL
Sbjct: 1147 YRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLR----NEVG-----HKLD 1197
Query: 212 PKFIGPYQISERVG 225
K+ GPY+I E +G
Sbjct: 1198 FKYTGPYKI-ESIG 1210
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 50.4 bits (119), Expect = 6e-06
Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +S+ LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 354 PQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 413
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F E P L
Sbjct: 414 GTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQA 470
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ RE K + + D+ F+ GD V++ R +++ L P
Sbjct: 471 HLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWV---------RRHQTKNLEP 521
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 522 RWKGPYTV 529
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 50.4 bits (119), Expect = 6e-06
Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +S+ LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 969 PQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 1028
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F E P L
Sbjct: 1029 GTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQA 1085
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ RE K + + D+ F+ GD V++ R +++ L P
Sbjct: 1086 HLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWV---------RRHQTKNLEP 1136
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1137 RWKGPYTV 1144
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P I SD P F S+ + L LG +L AY PQ+ GQ ER +++++ L LE
Sbjct: 964 PKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLET 1023
Query: 96 GGASDSHLPLIEFTYNNSYHSSIGMAPFEALYG 128
G L + + + G+ P+E LYG
Sbjct: 1024 GLKDWRRLLSLALLRARNTPNRFGLTPYEILYG 1056
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 50.4 bits (119), Expect = 6e-06
Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +S+ LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 178 PQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 237
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F E P L
Sbjct: 238 GTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQA 294
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ RE K + + D+ F+ GD V++ R +++ L P
Sbjct: 295 HLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWV---------RRHQTKNLEP 345
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 346 RWKGPYTV 353
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 49.7 bits (117), Expect = 1e-05
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +++ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 969 PQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 1028
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 1029 GSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMTRVTNSPSLQA 1085
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ E + + + D+ ++ GD V++ R +++ L P
Sbjct: 1086 HLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWV---------RRHQTKNLEP 1136
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 1137 RWKGPYTV 1144
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 49.7 bits (117), Expect = 1e-05
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 36 PSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQ 95
P + +D P F S+ +++ D LG +L AY PQ+ GQ ER +++++ L L
Sbjct: 55 PQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAT 114
Query: 96 GGAS-DSHLPLIEFTYNNSYHSSIGMAPFEALYGWRCRTPLCWFESGE--SVVLGPDLVH 152
G LPL + N+ G+ P+E LYG PL F + V P L
Sbjct: 115 GSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMTRVTNSPSLQA 171
Query: 153 ETTEKVRMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPLTGVGRALKSRKLTP 212
+ E + + + D+ ++ GD V++ R +++ L P
Sbjct: 172 HLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWV---------RRHQTKNLEP 222
Query: 213 KFIGPYQI 220
++ GPY +
Sbjct: 223 RWKGPYTV 230
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,044,780
Number of Sequences: 164201
Number of extensions: 1389051
Number of successful extensions: 3718
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3678
Number of HSP's gapped (non-prelim): 43
length of query: 325
length of database: 59,974,054
effective HSP length: 110
effective length of query: 215
effective length of database: 41,911,944
effective search space: 9011067960
effective search space used: 9011067960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC137081.4