BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136973.1 - phase: 0 /pseudo
         (381 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...   114  3e-25
RAG1_MOUSE (P15919) V(D)J recombination activating protein 1 (RA...    30  7.8

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score =  114 bits (286), Expect = 3e-25
 Identities = 54/153 (35%), Positives = 94/153 (61%), Gaps = 3/153 (1%)

Query: 51  AIPSYVMSIFRLSNTLLDEI-EMMNSFWWGHGGSSNRGLNWLSWEKLSVHK-NDGGMGFK 108
           A+P Y MS FRLS  L  ++   M  FWW     + R ++W++W+KL   K +DGG+GF+
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWS-SCENKRKISWVAWQKLCKSKEDDGGLGFR 60

Query: 109 DFVAFNVAMLGKQGWQLQTKPDSLVSKIFKARYYPNSNFLDAKLGHNPSFVWRSILSAKV 168
           D   FN A+L KQ +++  +P +L+S++ ++RY+P+S+ ++  +G  PS+ WRSI+  + 
Sbjct: 61  DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 120

Query: 169 VVRQGARWKIGAGFDIPIISEPWIGSGSSIPPV 201
           ++ +G    IG G    +  + WI   + +PP+
Sbjct: 121 LLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153


>RAG1_MOUSE (P15919) V(D)J recombination activating protein 1
           (RAG-1)
          Length = 1040

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 265 FCEKCISYMHRR---SHQQ*PFAQTRVLKWHLETKS 297
           FC  C S MHR+   SH Q  F +   ++WH  T S
Sbjct: 174 FCHDCWSIMHRKFSSSHSQVYFPRKVTVEWHPHTPS 209


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.339    0.148    0.518 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,465,898
Number of Sequences: 164201
Number of extensions: 1742928
Number of successful extensions: 4591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4589
Number of HSP's gapped (non-prelim): 2
length of query: 381
length of database: 59,974,054
effective HSP length: 112
effective length of query: 269
effective length of database: 41,583,542
effective search space: 11185972798
effective search space used: 11185972798
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)