BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136841.6 + phase: 0
(372 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NUAM_ACACA (Q37373) NADH-ubiquinone oxidoreductase 75 kDa subuni... 32 2.6
HCR_MOUSE (Q8K2I2) Alpha helical coiled-coil rod protein 32 3.4
ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor ... 32 3.4
YLA4_CAEEL (Q05036) Hypothetical protein C30C11.4 in chromosome III 31 4.4
PREA_CYAPA (P31171) Prenyl transferase (EC 2.5.1.-) 31 4.4
BKDR_PSEPU (P42179) Bkd operon transcriptional regulator 31 4.4
LEUD_LISIN (Q92A25) 3-isopropylmalate dehydratase small subunit ... 31 5.8
HTPX_HELPY (O25582) Probable protease htpX homolog (EC 3.4.24.-) 31 5.8
HR78_DROME (Q24142) Nuclear hormone receptor HR78 (dHR78) (Nucle... 31 5.8
CHKA_HUMAN (P35790) Choline kinase alpha (EC 2.7.1.32) (CK) (CHE... 30 7.5
CH62_CORGL (Q8NM64) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL... 30 7.5
CH60_CAUCR (P48211) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 30 7.5
NRDD_HAEIN (P43752) Anaerobic ribonucleoside-triphosphate reduct... 30 9.9
MUTS_STRP8 (Q8NZ24) DNA mismatch repair protein mutS 30 9.9
>NUAM_ACACA (Q37373) NADH-ubiquinone oxidoreductase 75 kDa subunit
(EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75KD) (CI-75KD)
(NADH dehydrogenase subunit 11)
Length = 675
Score = 32.0 bits (71), Expect = 2.6
Identities = 22/76 (28%), Positives = 37/76 (47%), Gaps = 13/76 (17%)
Query: 159 SKDWELESIHTLEVLDMIREHV-TTVTGLK-------AKPSVTESWATTKVR----QFLL 206
S+ WEL+S ++++VLD + ++ + G K + E W T K+R F
Sbjct: 212 SRPWELKSYNSIDVLDSLHSNIRVDIRGTKIMRILPRVNSELNEDWITDKIRFSYDSFRR 271
Query: 207 GRIYVASI-LYGYFLK 221
R+Y + + G FLK
Sbjct: 272 QRLYDPMVKISGSFLK 287
>HCR_MOUSE (Q8K2I2) Alpha helical coiled-coil rod protein
Length = 770
Score = 31.6 bits (70), Expect = 3.4
Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 6/150 (4%)
Query: 35 ASAGASSHCESSSLNTPLLPRTQVGKFLSGVLQNHRNLFHVAVQEELKLLADDRDAANSR 94
A A + E+ L T L V K L QE+L L A
Sbjct: 133 AVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDS 192
Query: 95 MLLASESDEALLH----RRIAEMKENQCEVAVEDIMSLLIFHKFSEIRAP--LVPKLSRC 148
+ +E E L+ +R E K+ D++ + E+ A LV L +
Sbjct: 193 LASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKY 252
Query: 149 LYNGRLEILPSKDWELESIHTLEVLDMIRE 178
+ L PS++WELE L+ L ++E
Sbjct: 253 VGEQVLPEFPSQEWELERKELLDTLKHLKE 282
>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC
1.14.-.-)
Length = 669
Score = 31.6 bits (70), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 153 RLEILPSKDWELESIHTLEVLDMIREHVTTVTGLKAKPSVTESWAT 198
+L +L SKD+ E H+L + H+ V G+K K ++ E+ T
Sbjct: 21 QLPLLISKDFSAELYHSLPCRSLENGHINKVKGVKVKATIAEAPVT 66
>YLA4_CAEEL (Q05036) Hypothetical protein C30C11.4 in chromosome III
Length = 776
Score = 31.2 bits (69), Expect = 4.4
Identities = 34/150 (22%), Positives = 62/150 (40%), Gaps = 21/150 (14%)
Query: 117 QCEVAVEDIMSLLIFHKFSEIRAPLVPKLSRCLYN---GRLEILPSKDWELESIHTLEVL 173
+C + +D+ + +F ++ AP+ ++ + L N + I P + E+E + +
Sbjct: 291 ECFMEDKDVTGKMQRQEFEDLAAPIFNRIKQVLINLFADGVSIKPEEIDEIEIVGGSSRI 350
Query: 174 DMIREHVTTVTGLKAKPSVTESWATTKVRQFLLGRIYVASILYGYFLKSVSLRYHLERNL 233
MIRE V + G + K ++ + A + G +IL F R
Sbjct: 351 PMIREIVKDLFGKEPKTTMNQDEAVAR------GAAMQCAILSPTF-----------RVR 393
Query: 234 NLANHDVHPGHRTNLSFKDMCPYGFEDDIF 263
A D P +R LS+ G E+D+F
Sbjct: 394 EFAIKDTQP-YRIRLSWNSTGENGGENDVF 422
>PREA_CYAPA (P31171) Prenyl transferase (EC 2.5.1.-)
Length = 323
Score = 31.2 bits (69), Expect = 4.4
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 156 ILPSKDWELESIHTLEVLDMIREHVTTVTGLKAKPSVTESWATTKVRQFLLGRIYVASIL 215
+ W L ++ +LEV+ +I + +T + + + + + ++L Y + L
Sbjct: 119 LFAQSSWYLANLESLEVVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASL 178
Query: 216 YGYFLKSVSLRYHLERNLNLANHDVHPGHRTNLSFKDMCPYGFEDDIFGHLSNMKPIGQ 274
K+ +L H++ L +AN + G L+F+ DDI S+ + +G+
Sbjct: 179 LAASSKAAALLSHVD--LTVANDLYNYGRHLGLAFQ------IVDDILDFTSSTEELGK 229
>BKDR_PSEPU (P42179) Bkd operon transcriptional regulator
Length = 161
Score = 31.2 bits (69), Expect = 4.4
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 257 GFEDDIFGHLSNMKPIGQGLIRQEEEI----EDLKCYVMRFHPGSLQR 300
G + ++F H+S K + Q L R EEEI E ++CY+M P L R
Sbjct: 63 GLDVNVFIHVSLEKQVEQSLHRFEEEIAERPEVMECYLMTGDPDYLLR 110
>LEUD_LISIN (Q92A25) 3-isopropylmalate dehydratase small subunit (EC
4.2.1.33) (Isopropylmalate isomerase) (Alpha-IPM
isomerase) (IPMI)
Length = 193
Score = 30.8 bits (68), Expect = 5.8
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 308 EAVNLVRSYSSALFNSEGFDSVDSDDVILTSFSSLKRLVLEAVAFGSFLWETEDYIDN 365
EA+ + + AL N D++D+D +I SF LKR+ E FG FL+++ Y+ N
Sbjct: 2 EAIKVHIGKTVALMN----DNIDTDQIIPKSF--LKRI--ERTGFGEFLFDSWRYLPN 51
>HTPX_HELPY (O25582) Probable protease htpX homolog (EC 3.4.24.-)
Length = 310
Score = 30.8 bits (68), Expect = 5.8
Identities = 13/53 (24%), Positives = 32/53 (59%)
Query: 313 VRSYSSALFNSEGFDSVDSDDVILTSFSSLKRLVLEAVAFGSFLWETEDYIDN 365
++++SS + + +G+ +D+ V+ + + + RL+LE + + +E + YI N
Sbjct: 75 IQNFSSIMLSGDGYKLIDTSKVLSSKENQIHRLLLELLEEANLHFEPKLYIIN 127
>HR78_DROME (Q24142) Nuclear hormone receptor HR78 (dHR78) (Nuclear
receptor XR78E/F)
Length = 601
Score = 30.8 bits (68), Expect = 5.8
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Query: 122 VEDIMSLLIFHKFSEIRAPLVPKLSRCLYNGRLEILPSKDWELESIHTLEVLDMIREHV 180
++ + + + HK +I P+ +L R NG L + P D E E T + +D EH+
Sbjct: 290 IQSSLDMRVIHKGLQILQPIQNQLER---NGNLSVKPECDSEAEDSGTEDAVDAELEHM 345
>CHKA_HUMAN (P35790) Choline kinase alpha (EC 2.7.1.32) (CK)
(CHETK-alpha)
Length = 457
Score = 30.4 bits (67), Expect = 7.5
Identities = 24/93 (25%), Positives = 43/93 (45%), Gaps = 3/93 (3%)
Query: 114 KENQCEVAVEDIMSLLIFHKFSEIRAPLVPKLSRCLYNGRLE-ILPSKDWELESIHTLEV 172
KEN+ + A ++ ++F +E L PKL GRLE +PS+ + E + ++
Sbjct: 167 KENEFQGAEAMVLESVMFAILAE--RSLGPKLYGIFPQGRLEQFIPSRRLDTEELGLPDI 224
Query: 173 LDMIREHVTTVTGLKAKPSVTESWATTKVRQFL 205
I E + T G+K + W + ++L
Sbjct: 225 SAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYL 257
>CH62_CORGL (Q8NM64) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL
protein 2)
Length = 548
Score = 30.4 bits (67), Expect = 7.5
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 119 EVAVEDIMSLLIFHKFSEIRAPLVPKLSRCLYNGRLEILPSKDWELESIHTLEV 172
E +ED LL+ K S I+ L+P L + + +G+ ++ S+D E E++ TL V
Sbjct: 215 EAVLEDPYILLVSGKISNIK-DLLPLLEKVMQSGKPLLIISEDVEGEALSTLVV 267
>CH60_CAUCR (P48211) 60 kDa chaperonin (Protein Cpn60) (groEL
protein)
Length = 547
Score = 30.4 bits (67), Expect = 7.5
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 116 NQCEVAVEDIMSLLIFHKFSEIRAPLVPKLSRCLYNGRLEILPSKDWELESIHTLEV 172
++ EV +E+ + LL K S ++ PL+P L + +GR ++ ++D E E++ TL V
Sbjct: 209 DKMEVQLEEPLILLFEKKLSSLQ-PLLPVLEAVVQSGRPLLIIAEDVEGEALATLVV 264
>NRDD_HAEIN (P43752) Anaerobic ribonucleoside-triphosphate reductase
(EC 1.17.4.2)
Length = 707
Score = 30.0 bits (66), Expect = 9.9
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 55 RTQVGKFLSGVL-QNHRNLFHVAVQEELKLLADDRDAANSRMLLASESDEALLHRRIAEM 113
R+Q+ K + G++ Q++ L + ++ K++ RD + ++ + +L R + E
Sbjct: 98 RSQLTKEIEGLIEQSNVELLNENANKDAKVIPTQRDLL-AGIVAKHYAKHNILPRDVVEA 156
Query: 114 KENQCEVAVEDIMSLLIFHKFSEIRAPLVPKLSRCLYNGRLEILPSKDWELESIHTLEVL 173
E E+ D+ F F+ + L LSR G EI P K + T +++
Sbjct: 157 HEKG-EIHYHDLDYAPFFPMFNCMLVDLEGMLSRGFKMGNAEIEPPKSIGTATAVTAQII 215
Query: 174 DMIREHV 180
+ H+
Sbjct: 216 AQVASHI 222
>MUTS_STRP8 (Q8NZ24) DNA mismatch repair protein mutS
Length = 851
Score = 30.0 bits (66), Expect = 9.9
Identities = 24/84 (28%), Positives = 43/84 (50%), Gaps = 5/84 (5%)
Query: 109 RIAEMKENQCEVAVEDIMSLLIFHKFSEI-RAPLVPKLSRCLYNGRLEILPSKDWELESI 167
+IA + ++ + A E ++ L + +EI P + S G+L + P +D E I
Sbjct: 765 KIAGLPKSLLKRADEVLIRLETQSRSTEIISVPSKVEPSSAAREGQLSLFPDEDKSQEII 824
Query: 168 HTLEVLDMIR----EHVTTVTGLK 187
HTLE +D++ + +TT+ LK
Sbjct: 825 HTLEAIDVMNMTPLQAMTTLYELK 848
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,770,645
Number of Sequences: 164201
Number of extensions: 1684916
Number of successful extensions: 4048
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4046
Number of HSP's gapped (non-prelim): 14
length of query: 372
length of database: 59,974,054
effective HSP length: 112
effective length of query: 260
effective length of database: 41,583,542
effective search space: 10811720920
effective search space used: 10811720920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC136841.6