BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136838.2 - phase: 2 
         (90 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III    32  0.22
CNO_HUMAN (Q9NUP1) Cappuccino protein homolog                          32  0.28
YPHG_ECOLI (P76585) Hypothetical protein yphG                          31  0.48
AREA_EMENI (P17429) Nitrogen regulatory protein areA                   30  1.1
REPS_BACAN (Q9RMZ4) Replication initiation protein                     29  1.8
UBJ1_MOUSE (Q9JJZ4) Ubiquitin-conjugating enzyme E2 J1 (EC 6.3.2...    29  2.4
YGL4_BACST (P32814) Hypothetical 35.5 kDa protein in gldA 3'regi...    28  4.1
JIPH_ATRCA (P42764) Jasmonate-induced protein homolog                  28  4.1
COAA_BPPF1 (P25129) Probable coat protein A precursor                  28  4.1
SERC_XYLFT (Q87BU0) Phosphoserine aminotransferase (EC 2.6.1.52)...    28  5.3
SERC_XYLFA (Q9PB19) Phosphoserine aminotransferase (EC 2.6.1.52)...    28  5.3
SFRF_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-...    27  7.0
SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CT...    27  7.0
PLSB_PSEAE (Q9HXW7) Glycerol-3-phosphate acyltransferase (EC 2.3...    27  7.0

>YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III
          Length = 724

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 37  SGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKG 80
           SG P QG W    ++D  PYY +     + + W  P    +TKG
Sbjct: 121 SGQPQQGQWKEFMSDDGKPYYYNTL--TKKTQWVKPDGEEITKG 162


>CNO_HUMAN (Q9NUP1) Cappuccino protein homolog
          Length = 217

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 8  DWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
          D G +P+       P+GA  S  +G ++ S +   G W    AED +P
Sbjct: 7  DGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAP 54


>YPHG_ECOLI (P76585) Hypothetical protein yphG
          Length = 1124

 Score = 31.2 bits (69), Expect = 0.48
 Identities = 14/26 (53%), Positives = 15/26 (56%)

Query: 47  RSAAEDASPYYNSNAEGDRFSWWAYP 72
           R+A E AS  YN NA    F WWA P
Sbjct: 199 RAALEIASRVYNGNATPRHFLWWANP 224


>AREA_EMENI (P17429) Nitrogen regulatory protein areA
          Length = 876

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 4   NLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGT--WARS 48
           N PP+ G     P  P +P G    E NG  T +    Q T  W R+
Sbjct: 641 NTPPESGLNSAAPSRPASPGGTKNGEQNGPTTCTNCFTQTTPLWRRN 687


>REPS_BACAN (Q9RMZ4) Replication initiation protein
          Length = 512

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 20/70 (28%), Positives = 29/70 (40%), Gaps = 8/70 (11%)

Query: 21  TPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKG 80
           +P+      +N   TLS A FQ  +A     D    +NSN E         P      +G
Sbjct: 281 SPKQTKAGRNNAIFTLSLACFQSQYAIKDTMDLMDQFNSNLE--------QPLEHTEVRG 332

Query: 81  ILVSFFSSAY 90
           I++S +S  Y
Sbjct: 333 IVMSAYSGKY 342


>UBJ1_MOUSE (Q9JJZ4) Ubiquitin-conjugating enzyme E2 J1 (EC
           6.3.2.19) (Non-canonical ubiquitin conjugating enzyme 1)
           (NCUBE1)
          Length = 318

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/26 (57%), Positives = 16/26 (60%)

Query: 15  QPDSPTTPRGATGSEHNGALTLSGAP 40
           Q D PTT +GAT S   GA   SGAP
Sbjct: 211 QDDLPTTFQGATASTSYGAQNPSGAP 236


>YGL4_BACST (P32814) Hypothetical 35.5 kDa protein in gldA 3'region
           (ORF4)
          Length = 301

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 2/39 (5%)

Query: 50  AEDAS--PYYNSNAEGDRFSWWAYPGSLAVTKGILVSFF 86
           A+D S  P  N+     R  +W+Y  S A T+ I   FF
Sbjct: 254 AKDKSDMPLVNAQTSNSRMRYWSYEDSTAYTENIQYKFF 292


>JIPH_ATRCA (P42764) Jasmonate-induced protein homolog
          Length = 185

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 46  ARSAAEDASPYYNSNAEGDRFSW---WAYPGSLAVTK 79
           A+  ++ A  YY SNA G+   W   W  P ++  TK
Sbjct: 84  AKDGSQGAVVYYGSNANGEPCGWLLAWCAPTNVTPTK 120


>COAA_BPPF1 (P25129) Probable coat protein A precursor
          Length = 437

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 6   PPDWG-----CI-----PKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
           PP W      C+     P  P  PTTP G  G + NG    +G    G    +   D S 
Sbjct: 239 PPGWSWSGTTCVKTPTDPTDPTDPTTPGGDGGGDGNGGGNNNGG---GNDGGTGNGDGSG 295

Query: 56  YYNSNAEGD 64
             + N  GD
Sbjct: 296 GGDGNGAGD 304


>SERC_XYLFT (Q87BU0) Phosphoserine aminotransferase (EC 2.6.1.52)
           (PSAT)
          Length = 362

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 43  GTWARSAAEDASPYYNSN--AEGDR 65
           G W+++A + ASPY N N  A+G+R
Sbjct: 101 GHWSKTALKQASPYVNINVVADGER 125


>SERC_XYLFA (Q9PB19) Phosphoserine aminotransferase (EC 2.6.1.52)
           (PSAT)
          Length = 362

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 43  GTWARSAAEDASPYYNSN--AEGDR 65
           G W+++A + ASPY N N  A+G+R
Sbjct: 101 GHWSKTALKQASPYVNINVVADGER 125


>SFRF_RAT (Q63627) Splicing factor, arginine/serine-rich 15
           (CTD-binding SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 5   LPPDWGCIPKQPDSPTTPRGATGSEH 30
           L PDW  IPK+P++     G   + H
Sbjct: 540 LNPDWKGIPKKPENEVAQNGGAEASH 565


>SFRF_HUMAN (O95104) Splicing factor, arginine/serine-rich 15
           (CTD-binding SR-like protein RA4) (Fragment)
          Length = 1157

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 5   LPPDWGCIPKQPDSPTTPRGATGSEH 30
           L PDW  IPK+P++     G   + H
Sbjct: 636 LNPDWKGIPKKPENEVAQNGGAETSH 661


>PLSB_PSEAE (Q9HXW7) Glycerol-3-phosphate acyltransferase (EC
           2.3.1.15) (GPAT)
          Length = 834

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 23/78 (29%), Positives = 30/78 (37%), Gaps = 6/78 (7%)

Query: 7   PDW-GCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAEGDR 65
           PDW G   K+  SPT  R       NG       P    W +S   ++SP+    A+   
Sbjct: 91  PDWLGRQDKRGASPTLVRMLAAVGQNGLDDAQIIPVSVFWGQSPDSESSPWKLLFADN-- 148

Query: 66  FSWWAYPGSLAVTKGILV 83
              WA  G L     IL+
Sbjct: 149 ---WAVTGRLRKLARILI 163


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.313    0.132    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,458,315
Number of Sequences: 164201
Number of extensions: 476765
Number of successful extensions: 842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 14
length of query: 90
length of database: 59,974,054
effective HSP length: 66
effective length of query: 24
effective length of database: 49,136,788
effective search space: 1179282912
effective search space used: 1179282912
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)