BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136838.16 + phase: 1 /pseudo
(68 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NA18_ARATH (Q9ZNU2) NAC-domain containing protein 18 (ANAC018) (... 30 1.5
MM15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.... 29 2.0
KF1D_RAT (O35787) Kinesin-like protein KIF1D 29 2.0
MM15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.... 29 2.6
PR4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele... 28 3.4
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 28 3.4
CTA4_MOUSE (Q99P47) Contactin associated protein-like 4 precurso... 28 3.4
ARHB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (P... 27 7.5
WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family memb... 27 9.8
HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19) 27 9.8
CTA4_HUMAN (Q9C0A0) Contactin associated protein-like 4 precurso... 27 9.8
>NA18_ARATH (Q9ZNU2) NAC-domain containing protein 18 (ANAC018)
(NO APICAL MERISTEM protein) (AtNAM)
Length = 320
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/56 (33%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 2 PPQPNSPPDNVFRP-DRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLP 56
PPQPN PP F P D + +K S P P+ I+ + L + F ++LP
Sbjct: 12 PPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDL----YKFDPWELP 63
>MM15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC
3.4.24.-) (MMP-15) (Membrane-type matrix
metalloproteinase 2) (MT-MMP 2) (MTMMP2)
(Membrane-type-2 matrix metalloproteinase) (MT2-MMP)
(MT2MMP)
Length = 657
Score = 29.3 bits (64), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHG 37
PP+P PP +P+RP K G + R + P +G
Sbjct: 327 PPRPPQPPHPGGKPERPPKPGPPPQPRATERPDQYG 362
>KF1D_RAT (O35787) Kinesin-like protein KIF1D
Length = 1097
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGL--GSKKRG---SAPPPIH 36
PP PN P + RP RP + L GS+ RG + P P H
Sbjct: 1008 PPPPNRRPPSPRRPHRPRRNSLDGGSRSRGGGSTQPEPQH 1047
>MM15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC
3.4.24.-) (MMP-15) (Membrane-type matrix
metalloproteinase 2) (MT-MMP 2) (MTMMP2)
(Membrane-type-2 matrix metalloproteinase) (MT2-MMP)
(MT2MMP) (SMCP-2)
Length = 669
Score = 28.9 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHG 37
PP+P PP +P+RP K G + R + P +G
Sbjct: 331 PPRPPQPPPPGGKPERPPKPGPPVQPRATERPDQYG 366
>PR4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S
precursor (Salivary proline-rich protein Po) (Parotid o
protein) [Contains: Protein N1; Glycosylated protein A]
Length = 247
Score = 28.5 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 4 QPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
Q PP + +P+RP G G++ +G+ PPP
Sbjct: 88 QSQGPPPHPGKPERPPPQG-GNQSQGTPPPP 117
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein)
Length = 620
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIH 36
PP P P + P PT + L S S PPP++
Sbjct: 319 PPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVY 353
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIH 36
PP P+SPP F P PT ++ PPP +
Sbjct: 371 PPPPSSPPPPSFSPPPPT------YEQSPPPPPAY 399
>CTA4_MOUSE (Q99P47) Contactin associated protein-like 4 precursor
(Cell recognition molecule Caspr4)
Length = 1310
Score = 28.5 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 25 SKKRGSAPPPIHGISKITLKVVVFHFRCFQLP-LILHLSSYF 65
SK HG K++ +++ F FR + P L+LH+SS++
Sbjct: 1023 SKNSSFHAASFHGDMKLSREMIKFSFRTTRAPSLLLHMSSFY 1064
>ARHB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11
(PDZ-RhoGEF)
Length = 1522
Score = 27.3 bits (59), Expect = 7.5
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP----------IHGISKITLKV 45
PPQP+S P P + G +R S PP H I ++TLK+
Sbjct: 1383 PPQPDSLPAGQTEPQPQLQGGNDDPRRPSRSPPSLALRDVGMIFHTIEQLTLKL 1436
>WAS2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member
2 (WASP-family protein member 2) (Verprolin homology
domain-containing protein 2)
Length = 497
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
P P PP + P P +G GS G+ PPP
Sbjct: 320 PAPPPPPPPMIGIPPPPPPIGFGSP--GTPPPP 350
>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)
Length = 417
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 PPQPNSPPDNVFRPDRPTKVGLG 24
PPQP PP P PT G G
Sbjct: 100 PPQPPPPPPPTLPPSSPTNPGSG 122
>CTA4_HUMAN (Q9C0A0) Contactin associated protein-like 4 precursor
(Cell recognition molecule Caspr4)
Length = 1308
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 25 SKKRGSAPPPIHGISKITLKVVVFHFRCFQLP-LILHLSSYF 65
SK S HG K++ +++ F FR + P L+L +SS++
Sbjct: 1021 SKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFVSSFY 1062
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,506,191
Number of Sequences: 164201
Number of extensions: 335540
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 59,974,054
effective HSP length: 44
effective length of query: 24
effective length of database: 52,749,210
effective search space: 1265981040
effective search space used: 1265981040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136838.16