BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136507.1 - phase: 0 
         (236 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

FBW4_HUMAN (P57775) F-box/WD-repeat protein 4 (F-box and WD-40 d...    32  1.0
KDKA_VIBCH (Q9KVB9) 3-deoxy-D-manno-octulosonic acid kinase (EC ...    32  1.3
FX24_MOUSE (Q9D417) F-box only protein 24                              31  2.2
YU20_ARATH (Q9ZPV5) Hypothetical UPF0120 protein At2g18220             30  3.8
SYA_SULSO (P96041) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...    30  5.0
MID1_RAT (P82458) Midline 1 protein (Tripartite motif-containing...    30  6.5
MID1_MUSSP (P82457) Midline 1 protein (Tripartite motif-containi...    30  6.5
MID1_MOUSE (O70583) Midline 1 protein (EC 6.3.2.-) (Tripartite m...    30  6.5
MID1_HUMAN (O15344) Midline 1 protein (EC 6.3.2.-) (Tripartite m...    30  6.5
YHFK_ECOLI (P45537) Hypothetical protein yhfK                          29  8.5
Y511_RICPR (Q9ZD36) Hypothetical protein RP511                         29  8.5
RL22_PARUW (Q6ME58) 50S ribosomal protein L22                          29  8.5
OSTY_YEAST (Q03723) Dolichyl-diphosphooligosaccharide--protein g...    29  8.5

>FBW4_HUMAN (P57775) F-box/WD-repeat protein 4 (F-box and WD-40
           domain protein 4) (Dactylin)
          Length = 412

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 32/113 (28%), Positives = 50/113 (43%), Gaps = 14/113 (12%)

Query: 89  LPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERHMKQKWGR--------VIGS 140
           LPE +L  I   L   +L ++A VC  LR     D LW R  +             ++ S
Sbjct: 31  LPEELLLLICSYLDMRALGRLAQVCRWLRRFTSCDLLWRRIARASLNSGFTRLGTDLMTS 90

Query: 141 VAYREWKWHVATKKNIGSLRHGKPRSLIKFMSLYWPFSWMRMKVDAAYSNSAN 193
           V  +E +  V+    +G  R G    L+K+     P  WM+++ D+ Y + AN
Sbjct: 91  VPVKE-RVKVSQNWRLGRCREG---ILLKWRCSQMP--WMQLEDDSLYISQAN 137


>KDKA_VIBCH (Q9KVB9) 3-deoxy-D-manno-octulosonic acid kinase (EC
           2.7.1.-) (KDO kinase)
          Length = 251

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 114 HSLRERCVSDHLWERHMKQKWGRVIGSVAYREWKWHVATKKNIGSLRHGKPRSLIKFM-- 171
           H    +C +   W+++     G+V+GS   R   W V  ++  G+LRH +   L   +  
Sbjct: 36  HEDPSQCCNPEFWQQN-----GKVLGSATGRGTTWFVQLQQTQGALRHYRRGGLFGKLVA 90

Query: 172 SLYWPFSWMRMK 183
             YW   W + +
Sbjct: 91  DSYWFTGWEKTR 102


>FX24_MOUSE (Q9D417) F-box only protein 24
          Length = 589

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 1/65 (1%)

Query: 84  LSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERHMKQKWGRVIG-SVA 142
           +SV   P  ++E I+  LP   L  +   CH   E C ++ +W R  ++   R+   S  
Sbjct: 24  ISVQLFPPELVEHIVSFLPVKDLVALGQTCHYFHEVCDAEGVWRRICRRLSPRIRDQSSG 83

Query: 143 YREWK 147
            R WK
Sbjct: 84  ARPWK 88


>YU20_ARATH (Q9ZPV5) Hypothetical UPF0120 protein At2g18220
          Length = 779

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 20  LLKPLPSWTNEVRLISLLFHKDFCLKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDS 79
           L++ L  W+  V    L F     L+SFCK    T   R     K L+S++E   E V+ 
Sbjct: 527 LVEHLSQWSCSVAFFELSFIPTIRLRSFCK---STKAERFRKEMKQLISQIEANSEFVNK 583

Query: 80  LQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRER 119
            +  +  L   +L  E  LE    +    +      +R+R
Sbjct: 584 KRALIKFLP-NDLAAESFLEDEKKAGKTPLLQYAEIIRQR 622


>SYA_SULSO (P96041) Alanyl-tRNA synthetase (EC 6.1.1.7)
           (Alanine--tRNA ligase) (AlaRS)
          Length = 900

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 54  TLVSRMSLVKKTLVSKVENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSS 105
           T+     +V K L   ++NVEEE+D   +   +LD  + ++  + + L PS+
Sbjct: 298 TIKIHRQMVSKELGIDIKNVEEELDRAAKVFQILDHTKTIMLMLADGLVPSN 349


>MID1_RAT (P82458) Midline 1 protein (Tripartite motif-containing
           protein 18)
          Length = 667

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 10/104 (9%)

Query: 20  LLKPLPSWTNEVRLISLLFHKDFCLKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDS 79
           L++P+P   + +R +  L H+D  +  +C    + + +   LV +    +V  + E  D 
Sbjct: 161 LIEPIPD--SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDK 218

Query: 80  LQQNLSVLDLPELV-----LECILEKLPPSSLCQMAGVCHSLRE 118
           L+QNL   +L  L+     LE +L KL     CQ   V  S +E
Sbjct: 219 LKQNLE-SNLTNLIKRNTELETLLAKL--IQTCQHVEVNASRQE 259


>MID1_MUSSP (P82457) Midline 1 protein (Tripartite motif-containing
           protein 18)
          Length = 667

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 10/104 (9%)

Query: 20  LLKPLPSWTNEVRLISLLFHKDFCLKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDS 79
           L++P+P   + +R +  L H+D  +  +C    + + +   LV +    +V  + E  D 
Sbjct: 161 LIEPIPD--SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDK 218

Query: 80  LQQNLSVLDLPELV-----LECILEKLPPSSLCQMAGVCHSLRE 118
           L+QNL   +L  L+     LE +L KL     CQ   V  S +E
Sbjct: 219 LKQNLE-SNLTNLIKRNTELETLLAKL--IQTCQHVEVNASRQE 259


>MID1_MOUSE (O70583) Midline 1 protein (EC 6.3.2.-) (Tripartite
           motif-containing protein 18) (Midin)
          Length = 680

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 10/104 (9%)

Query: 20  LLKPLPSWTNEVRLISLLFHKDFCLKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDS 79
           L++P+P   + +R +  L H+D  +  +C    + + +   LV +    +V  + E  D 
Sbjct: 161 LIEPIPD--SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDK 218

Query: 80  LQQNLSVLDLPELV-----LECILEKLPPSSLCQMAGVCHSLRE 118
           L+QNL   +L  L+     LE +L KL     CQ   V  S +E
Sbjct: 219 LKQNLE-SNLTNLIKRNTELETLLAKL--IQTCQHVEVNASRQE 259


>MID1_HUMAN (O15344) Midline 1 protein (EC 6.3.2.-) (Tripartite
           motif-containing protein 18) (Putative transcription
           factor XPRF) (Midin)
          Length = 667

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 10/104 (9%)

Query: 20  LLKPLPSWTNEVRLISLLFHKDFCLKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDS 79
           L++P+P   + +R +  L H+D  +  +C    + + +   LV +    +V  + E  D 
Sbjct: 161 LIEPIPD--SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDK 218

Query: 80  LQQNLSVLDLPELV-----LECILEKLPPSSLCQMAGVCHSLRE 118
           L+QNL   +L  L+     LE +L KL     CQ   V  S +E
Sbjct: 219 LKQNLE-SNLTNLIKRNTELETLLAKL--IQTCQHVEVNASRQE 259


>YHFK_ECOLI (P45537) Hypothetical protein yhfK
          Length = 700

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (56%)

Query: 176 PFSWMRMKVDAAYSNSANKQNSYLPPDSFMTWYLA 210
           P +W RM+V+ A++   N  N  +   +F + YLA
Sbjct: 544 PLAWQRMRVNQAHNTLYNSLNQAMQEPAFNSHYLA 578


>Y511_RICPR (Q9ZD36) Hypothetical protein RP511
          Length = 950

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 44  LKSFCKLFRKTLVSRMSLVKKTLVSKVENVEEEVDSLQQNLSVLDLPELVLECILEKLP 102
           LK F KLF K  +   S +K+        ++E  +S + +L +LD    ++  +L K+P
Sbjct: 237 LKKFNKLFYKQEIMLTSFLKEVKAQSKPFLQEHFESYKIDLKILD----IIPTLLNKIP 291


>RL22_PARUW (Q6ME58) 50S ribosomal protein L22
          Length = 111

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/29 (44%), Positives = 21/29 (71%)

Query: 61 LVKKTLVSKVENVEEEVDSLQQNLSVLDL 89
          L+KKTL S V N E ++D  ++NL V+++
Sbjct: 47 LLKKTLDSAVANAETQLDMRRENLKVVEV 75


>OSTY_YEAST (Q03723) Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 37 kDa subunit (EC 2.4.1.119)
           (Oligosaccharyl transferase 37 kDa subunit) (OTASE 37
           kDa subunit)
          Length = 332

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 4   YFITCVSFFLFLKPLLLLKPLPSWTNEVRLISLLFHKDFCLKS 46
           YF+ C+  F+F+K ++    LP  TN+ +L S++      L S
Sbjct: 192 YFVACMVVFIFIKKVI----LPKVTNKWKLFSMILSLGILLPS 230


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,411,244
Number of Sequences: 164201
Number of extensions: 1070505
Number of successful extensions: 3526
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3520
Number of HSP's gapped (non-prelim): 15
length of query: 236
length of database: 59,974,054
effective HSP length: 107
effective length of query: 129
effective length of database: 42,404,547
effective search space: 5470186563
effective search space used: 5470186563
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)