BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.5 + phase: 0
(201 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y3I0_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980 35 0.12
YG54_SYNY3 (P72817) Hypothetical protein sll1654 33 0.34
NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B)... 32 0.75
GATC_STRMU (Q8DSG4) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 32 0.98
NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B)... 32 1.3
ISPE_GLOVI (Q7NPF3) 4-diphosphocytidyl-2-C-methyl-D-erythritol k... 32 1.3
S3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome as... 31 1.7
S3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome as... 31 1.7
S3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome as... 31 1.7
PKH1_YEAST (Q03407) Serine/threonine-protein kinase PKH1 (EC 2.7... 30 2.9
NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B)... 30 2.9
YGEV_ECOLI (Q46802) Hypothetical sigma-54-dependent transcriptio... 30 3.7
YF72_METJA (Q58967) Hypothetical ABC transporter ATP-binding pro... 30 3.7
P300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48) 30 4.9
NHAX_BACSU (O07552) Stress response protein nhaX 30 4.9
IRA3_MOUSE (Q8K4B2) Interleukin-1 receptor-associated kinase-3 (... 30 4.9
YMC6_SCHPO (P05511) Hypothetical 91 kDa protein in cob intron 29 6.4
Y288_THEMA (Q9WYC4) Hypothetical ABC transporter ATP-binding pro... 29 6.4
HKL5_ARATH (P48002) Homeobox protein knotted-1 like 5 (KNAT5) (H... 29 6.4
DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1) 29 6.4
>Y3I0_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980
Length = 446
Score = 35.0 bits (79), Expect = 0.12
Identities = 35/138 (25%), Positives = 58/138 (41%), Gaps = 11/138 (7%)
Query: 41 PSTLHTLPSGIIVKAKPQEPEVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIAL 100
P TLH LP I ++P+V ++ +F DR P A + +
Sbjct: 105 PQTLHRLPEMIDAARSTRKPQVDVSFPEIEKF--------DRLPEPRVDGPTAFVSVMEG 156
Query: 101 ANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIG 160
+KY VV ++ S P + I HL+E G+++ LL + +G + G
Sbjct: 157 CSKY-CSFCVVPYTRGEEVSRPFDDVIAEVI--HLAENGVREVTLLGQNVNGFRGLTHDG 213
Query: 161 DVADELNLDLVVISMEAI 178
+AD L VV +++ I
Sbjct: 214 RLADFAELLRVVAAVDGI 231
>YG54_SYNY3 (P72817) Hypothetical protein sll1654
Length = 157
Score = 33.5 bits (75), Expect = 0.34
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 144 KLLERLGDGSKPTAIIGDVADELNLDLVVISME--AIHTKHIDANLLAEFI---PCPVML 198
K +ER G S I DVADE+N DL+V+ + T+ + ++ A I PCPV++
Sbjct: 99 KTIEREGMAS---FTICDVADEVNADLIVMGCRGLGLTTEGVAESVTARVINLSPCPVLV 155
Query: 199 LP 200
+P
Sbjct: 156 VP 157
>NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
transcription factor) (CTF) (TGGCA-binding protein)
Length = 560
Score = 32.3 bits (72), Expect = 0.75
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 9 PLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTL-HTLPS---------------GII 52
PL +++ P PS +F++P I H NP TL + +PS ++
Sbjct: 364 PLPFPAQAILPPAPSSYFSHPTIRYPPH-LNPQDTLKNYVPSYDPSSPQTSQPNSSGQVV 422
Query: 53 VKAKPQEPEVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVV 112
K V + + + + L +TD KP ++ T+ A+ + AN+Y V
Sbjct: 423 GKVPGHFTPVLAPSPHHSAVRPVTLTMTDTKP-ITTSTEAYTASGTSQANRY------VG 475
Query: 113 IDEQQKESLPEHETQLSSIRWHLSEGG 139
+ + L H+ QL W +++ G
Sbjct: 476 LSPRDPSFL--HQQQLRICDWTMNQNG 500
>GATC_STRMU (Q8DSG4) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit C (EC 6.3.5.-) (Asp/Glu-ADT
subunit C)
Length = 100
Score = 32.0 bits (71), Expect = 0.98
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 61 EVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALA---NKYGADITVVVIDEQQ 117
++ + D T+F L I D L+E Q + T +A N D++V D +Q
Sbjct: 16 KLKFSDDETTEFATTLTKIVDMVELLNEVDTQGVPFTSNVADNINYMREDVSVAGWDREQ 75
Query: 118 K-ESLPEHETQLSSIRWHLSEGG 139
+++PEHE L + + EGG
Sbjct: 76 LFKNVPEHEDGLIKVPAIIDEGG 98
>NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
transcription factor) (CTF) (TGGCA-binding protein)
Length = 570
Score = 31.6 bits (70), Expect = 1.3
Identities = 31/147 (21%), Positives = 53/147 (35%), Gaps = 17/147 (11%)
Query: 9 PLQLVKPSLISPKPSLFFNNPPISITSHFFNP---------------PSTLHTLPSGIIV 53
PL +++ P PS +F++P I H NP P T SG +V
Sbjct: 365 PLPFPTQAILPPAPSSYFSHPTIRYPPH-LNPQDTLKNYVPSYDPSSPQTSQPNSSGQVV 423
Query: 54 KAKPQEPEVAIATDSF-TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVV 112
P +A + + + L +TD KP + +A + T G
Sbjct: 424 GKVPGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEGEAASPTATTYTASGTSQANRY 483
Query: 113 IDEQQKESLPEHETQLSSIRWHLSEGG 139
+ ++ H+ QL W +++ G
Sbjct: 484 VGLSPRDPSFLHQQQLRICDWTMNQNG 510
>ISPE_GLOVI (Q7NPF3) 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase (EC 2.7.1.148) (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase)
Length = 302
Score = 31.6 bits (70), Expect = 1.3
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 80 TDRKPYLSEGTKQAIATTI---ALANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLS 136
T R+ YLSEGT T+ A+A++ A I ++ ++ ++ LP + Q+S++R HL
Sbjct: 183 TYRREYLSEGTAPRARTSALLSAVASQEVARIAPLLHNDLERAVLPAY-PQVSALREHLV 241
Query: 137 EGGLKDYKLLERLGDGSKPTAIIGDVADELNLDLV 171
G L + GS P A+ G D + + V
Sbjct: 242 SAG-----ALGAMMSGSGP-AVFGLARDRAHAEAV 270
>S3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome
associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA
splicing factor SF3b 155 kDa subunit) (146 kDa nuclear
protein)
Length = 1307
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 81 DRKPYLSEGTKQAIATTIALANKYG-ADITVVVIDEQQKESLPEHETQLSSIRWHLSEGG 139
DR+ Y +Q + TT+ LANK G A+I ++D+ + E+ + + +I + G
Sbjct: 829 DRRNY-----RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG 883
Query: 140 LK--DYKLLERLGDG 152
D+KL E+L DG
Sbjct: 884 AADIDHKLEEQLIDG 898
>S3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome
associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA
splicing factor SF3b 155 kDa subunit)
Length = 1304
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 81 DRKPYLSEGTKQAIATTIALANKYG-ADITVVVIDEQQKESLPEHETQLSSIRWHLSEGG 139
DR+ Y +Q + TT+ LANK G A+I ++D+ + E+ + + +I + G
Sbjct: 826 DRRNY-----RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG 880
Query: 140 LK--DYKLLERLGDG 152
D+KL E+L DG
Sbjct: 881 AADIDHKLEEQLIDG 895
>S3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome
associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA
splicing factor SF3b 155 kDa subunit)
Length = 1304
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 81 DRKPYLSEGTKQAIATTIALANKYG-ADITVVVIDEQQKESLPEHETQLSSIRWHLSEGG 139
DR+ Y +Q + TT+ LANK G A+I ++D+ + E+ + + +I + G
Sbjct: 826 DRRNY-----RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG 880
Query: 140 LK--DYKLLERLGDG 152
D+KL E+L DG
Sbjct: 881 AADIDHKLEEQLIDG 895
>PKH1_YEAST (Q03407) Serine/threonine-protein kinase PKH1 (EC
2.7.1.37) (3-phosphoinositide dependent protein
kinase-1)
Length = 766
Score = 30.4 bits (67), Expect = 2.9
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 134 HLSEGGLKDYKLLERLGDGSKPTAIIGDVAD 164
H+ + G+KD+K E+LGDGS + ++ D
Sbjct: 116 HVVKMGIKDFKFGEQLGDGSYSSVVLATARD 146
>NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
transcription factor) (CTF) (TGGCA-binding protein)
Length = 561
Score = 30.4 bits (67), Expect = 2.9
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 9 PLQLVKPSLISPKPSLFFNNPPISITSHFFNP---------------PSTLHTLPSGIIV 53
PL +++ P PS +F++P I H NP P T SG +V
Sbjct: 365 PLPFPTQAILPPAPSSYFSHPTIRYPPH-LNPQDTLKNYVPSYDPSSPQTSQPNSSGQVV 423
Query: 54 KAKPQEPEVAIATDSF-TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVV 112
P +A + + + L +TD KP ++ T+ A+ + A++Y V
Sbjct: 424 GKVPGHFTPVLAPSPHPSAVRPVTLTMTDTKP-ITTSTEAYTASGTSQASRY------VG 476
Query: 113 IDEQQKESLPEHETQLSSIRWHLSEGG 139
++ + L H+ QL W +++ G
Sbjct: 477 LNPRDPSFL--HQQQLRICDWTMNQNG 501
>YGEV_ECOLI (Q46802) Hypothetical sigma-54-dependent transcriptional
regulator ygeV
Length = 592
Score = 30.0 bits (66), Expect = 3.7
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 KQAIATTIALANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSEGGLKDYKLLERLG 150
K + T + L ++ I+++ + +Q+E + ++ + S H+S + KLLE G
Sbjct: 96 KAFLGTPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHIST--IFVSKLLEDQG 153
Query: 151 DGSKPTAIIGDVADELNLDLVVISME 176
G + I + D ++ ++V+ E
Sbjct: 154 PGDNISKIFATMIDNMDQGVLVVDDE 179
>YF72_METJA (Q58967) Hypothetical ABC transporter ATP-binding
protein MJ1572
Length = 278
Score = 30.0 bits (66), Expect = 3.7
Identities = 45/184 (24%), Positives = 74/184 (39%), Gaps = 29/184 (15%)
Query: 21 KPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDSFTQFKHLLLPIT 80
K F NP + + FNP S + + +K + EV T + HL
Sbjct: 86 KVGFVFQNPDVML----FNPTVWDEVAFSPLHLYSKEKAIEVTDKTLKDMKIYHL----K 137
Query: 81 DRKPY-LSEGTKQAIATTIALANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSEGG 139
DR PY LS G K+ ++ + L+ + V+++DE P+ ++ ++ E G
Sbjct: 138 DRHPYNLSGGEKKKVSISCILS----VEPEVILMDEPTSALDPKSRAEIMNLIKSFKECG 193
Query: 140 --------------LKD--YKLLERLGDGSKPTAIIGDVADELNLDLVVISMEAIHTKHI 183
L D Y L +++ K + DELNLD+ IS I K++
Sbjct: 194 KTVVLVTHDLNLACLADRCYVLNKKVIFEGKVKDLFSLNLDELNLDVPEISKLFIKLKNM 253
Query: 184 DANL 187
N+
Sbjct: 254 GYNI 257
>P300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)
Length = 2414
Score = 29.6 bits (65), Expect = 4.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 17 LISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEV 62
L+ P+P+ + P +SI NPPST T + + K EV
Sbjct: 931 LLPPQPATPLSQPAVSIEGQVSNPPSTSSTEVNSQAIAEKQPSQEV 976
>NHAX_BACSU (O07552) Stress response protein nhaX
Length = 166
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/94 (24%), Positives = 47/94 (49%), Gaps = 12/94 (12%)
Query: 75 LLLPITDRKPYLSEG-TKQAIATTIALANKYGADITVVVIDEQQKESLPEHETQLSSIRW 133
L+ +T +P + E T++ IA + N+ AD + +++ ES+ EH ++S+
Sbjct: 73 LISDVTSPEPMIYEDRTEEVIAEARMMLNEQQADGDIDILEGDPAESIIEHANRISA--- 129
Query: 134 HLSEGGLKDYKLLERLGDGSKPTAIIGDVADELN 167
+ G +D L++L I G V+++L+
Sbjct: 130 DMIVTGSRDQNRLKKL--------IFGSVSEKLS 155
>IRA3_MOUSE (Q8K4B2) Interleukin-1 receptor-associated kinase-3 (EC
2.7.1.-) (IRAK-3) (IL-1 receptor-associated kinase M)
(IRAK-M)
Length = 609
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/70 (32%), Positives = 33/70 (46%), Gaps = 6/70 (8%)
Query: 8 PPLQLVKPSLISPKPSLFF-NNPPISITSHFFNPPSTLHTLPSGIIVKAKPQE-----PE 61
P + V SL S +PSL+F +PP S+ S P L +PS + + Q P+
Sbjct: 447 PTMDEVLSSLESTQPSLYFAEDPPTSLKSFRCPSPLFLDNVPSIPVEDDENQNNHSVPPK 506
Query: 62 VAIATDSFTQ 71
+ TD TQ
Sbjct: 507 EVLGTDRVTQ 516
>YMC6_SCHPO (P05511) Hypothetical 91 kDa protein in cob intron
Length = 807
Score = 29.3 bits (64), Expect = 6.4
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 91 KQAIATTIALANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSEGGLKDYKL 145
K ++ T + + K+G D+++ + + + + P+ TQL W ++ G K K+
Sbjct: 669 KLSLGTRMKVIKKFGPDLSIYDYNSRDENNKPKLITQLFKPSWKVNVWGFKSDKV 723
>Y288_THEMA (Q9WYC4) Hypothetical ABC transporter ATP-binding
protein TM0288
Length = 598
Score = 29.3 bits (64), Expect = 6.4
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 61 EVAIATDSFTQFKHLL----LPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQ 116
E A T S KHL +TD LS+G +Q +A T A A+ ++++DE
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL----ANPKILILDEA 518
Query: 117 QKESLPEHETQLSSIRWHLSEG 138
+ E + + W L EG
Sbjct: 519 TSNVDTKTEKSIQAAMWKLMEG 540
>HKL5_ARATH (P48002) Homeobox protein knotted-1 like 5 (KNAT5)
(Homeodomain containing protein 1)
Length = 383
Score = 29.3 bits (64), Expect = 6.4
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 4 THYLPP-----LQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQ 58
+H LPP L+ P P F+ P +T+ F N P+TL T S + +
Sbjct: 6 SHLLPPQEDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLTTADSDLAPPHRNG 65
Query: 59 EPEVAIATDSFTQF 72
+ VA + F
Sbjct: 66 DNSVADTNPRWLSF 79
>DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1)
Length = 751
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
Query: 6 YLPPLQLVKPSLISPKPSLFFNNPPISITSHF--FNPPSTLHTLPSGIIVKAKPQEPEVA 63
+LPP L P ++ P P + + PP S+T N ST+ + + V++ P E +
Sbjct: 416 HLPPNGLELPFMMMPHPLIPVSLPPASVTMAMSQMNHLSTIANMAAAAQVQSPPSRVETS 475
Query: 64 I 64
+
Sbjct: 476 V 476
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,623,212
Number of Sequences: 164201
Number of extensions: 1059712
Number of successful extensions: 2978
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2970
Number of HSP's gapped (non-prelim): 26
length of query: 201
length of database: 59,974,054
effective HSP length: 105
effective length of query: 96
effective length of database: 42,732,949
effective search space: 4102363104
effective search space used: 4102363104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC136504.5