BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136472.17 - phase: 0
(124 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DCHS_LYCES (P54772) Histidine decarboxylase (EC 4.1.1.22) (HDC) ... 105 2e-23
DCHS_VIBAN (Q56581) Histidine decarboxylase (EC 4.1.1.22) (HDC) 53 1e-07
DCHS_PSEFL (P95477) Histidine decarboxylase (EC 4.1.1.22) (HDC) 42 2e-04
DCHS_MORMO (P05034) Histidine decarboxylase (EC 4.1.1.22) (HDC) 42 2e-04
DCHS_KLEPL (P28578) Histidine decarboxylase (EC 4.1.1.22) (HDC) 42 2e-04
DCHS_ENTAE (P28577) Histidine decarboxylase (EC 4.1.1.22) (HDC) 42 2e-04
DCHS_RHILO (Q98A07) Histidine decarboxylase (EC 4.1.1.22) (HDC) 40 7e-04
FMT_CHLTE (Q8KCG8) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 33 0.15
NUOG_PSEPK (Q88FH2) NADH-quinone oxidoreductase chain 3 (EC 1.6.... 29 1.6
NUOG_PSEAE (Q9I0J6) NADH-quinone oxidoreductase chain 3 (EC 1.6.... 29 1.6
RPOB_WOLPI (Q93MK7) DNA-directed RNA polymerase beta chain (EC 2... 29 2.1
PFLA_ECOLI (P09374) Pyruvate formate-lyase 1 activating enzyme (... 29 2.1
NUOG_PSESM (Q87ZQ4) NADH-quinone oxidoreductase chain 3 (EC 1.6.... 29 2.1
NUOG_PSEFL (Q9KGW3) NADH-quinone oxidoreductase chain 3 (EC 1.6.... 29 2.1
GMHB_CHLTE (Q8KAY7) D,D-heptose 1,7-bisphosphate phosphatase (EC... 28 2.8
Y050_METJA (Q60358) Hypothetical protein MJ0050 28 3.6
PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso... 28 3.6
ATC8_YEAST (Q12674) Potential phospholipid-transporting ATPase D... 27 6.2
AMYG_CLOS0 (P29761) Glucoamylase precursor (EC 3.2.1.3) (Glucan ... 27 6.2
CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate d... 27 8.1
>DCHS_LYCES (P54772) Histidine decarboxylase (EC 4.1.1.22) (HDC)
(TOM92)
Length = 413
Score = 105 bits (261), Expect = 2e-23
Identities = 49/97 (50%), Positives = 65/97 (66%), Gaps = 1/97 (1%)
Query: 15 CLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVT 74
C+ NA Y KDRL+EAGI MLN+ S TVVFERP D +FIR+W L C +AHVV+MP +T
Sbjct: 307 CIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGIT 366
Query: 75 IEKLDDFLNELVQKR-ATWFEYGTFQPYCIASDVGEN 110
E +D F +L+Q+R W++ P C+A D+ N
Sbjct: 367 RETIDSFFKDLMQERNYKWYQDVKALPPCLADDLALN 403
>DCHS_VIBAN (Q56581) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 386
Score = 52.8 bits (125), Expect = 1e-07
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 8 FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
++ +V +CL A Y R E GI A N+ S+TVVF P E RK LA G++AH+
Sbjct: 292 WQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHI 350
Query: 68 VVMPNVT-IEKLDDFLNELV 86
+ MP++ +KLD + +++
Sbjct: 351 ITMPHLDGPDKLDPLIEDVI 370
>DCHS_PSEFL (P95477) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 405
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/89 (34%), Positives = 45/89 (49%), Gaps = 5/89 (5%)
Query: 2 AMLPYSFEK---EVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQL 58
A+ YS+ + ++ L A Y DR +GI A NE S TVVF P E K+ L
Sbjct: 284 ALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCL 342
Query: 59 ACKGNIAHVVVMP-NVTIEKLDDFLNELV 86
A GN AH++ P + +D ++E+V
Sbjct: 343 ATSGNSAHLITTPHHHDCSMIDALIDEVV 371
>DCHS_MORMO (P05034) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 377
Score = 42.4 bits (98), Expect = 2e-04
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 8 FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
+++ + + L A Y DR+ +AGI A N+ S TVVF P E R+ LA G++AH+
Sbjct: 291 WKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHL 349
Query: 68 VV----MPNVTIEKLDD 80
+ + V I+KL D
Sbjct: 350 ITTAHHLDTVQIDKLID 366
>DCHS_KLEPL (P28578) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 377
Score = 42.0 bits (97), Expect = 2e-04
Identities = 26/80 (32%), Positives = 44/80 (54%), Gaps = 2/80 (2%)
Query: 8 FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
+ + +++ L A Y DR AGI A N+ S TVVF P E +K LA G+IAH+
Sbjct: 291 WRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHL 349
Query: 68 VVMP-NVTIEKLDDFLNELV 86
+ ++ K+D +++++
Sbjct: 350 IATAHHLDSSKIDALIDDVI 369
>DCHS_ENTAE (P28577) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 377
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 8 FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
+ + + L A Y DR AGI A+ ++ S TVVF +P E +K LA GN+AH+
Sbjct: 291 WHRRIGHSLNMAKYAVDRFKAAGIDALCHKNSITVVFPKP-SEWVWKKHCLATSGNVAHL 349
Query: 68 VV----MPNVTIEKL-DDFLNELVQKRA 90
+ + + I+ L DD + +L Q+ A
Sbjct: 350 ITTAHHLDSSRIDALIDDVIADLAQRAA 377
>DCHS_RHILO (Q98A07) Histidine decarboxylase (EC 4.1.1.22) (HDC)
Length = 369
Score = 40.4 bits (93), Expect = 7e-04
Identities = 24/73 (32%), Positives = 39/73 (52%), Gaps = 2/73 (2%)
Query: 13 QKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPN 72
Q+C R A Y D L G+ A N + TVV P ++ KWQ+A + +++H+VV P
Sbjct: 294 QQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPG 351
Query: 73 VTIEKLDDFLNEL 85
T ++ D + +
Sbjct: 352 TTKQQADALIETI 364
>FMT_CHLTE (Q8KCG8) Methionyl-tRNA formyltransferase (EC 2.1.2.9)
Length = 314
Score = 32.7 bits (73), Expect = 0.15
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 18 NAHYFKDRLIEAGIGAM---LNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVT 74
NA RL E G G + L ++ V DE F K A K N + + N
Sbjct: 164 NAFELLKRLSEIGAGTVERTLTMIADGAVMPEKQDERFATK---APKLNRENTRIDWNQP 220
Query: 75 IEKLDDFLNELVQKRATWFEYG 96
+++L DF+ L K A W +G
Sbjct: 221 VQRLHDFIRGLALKPAAWTTFG 242
>NUOG_PSEPK (Q88FH2) NADH-quinone oxidoreductase chain 3 (EC
1.6.99.5) (NADH dehydrogenase I, chain G) (NDH-1, chain
G)
Length = 904
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 23 KDRLIEAGIGAMLNELSSTVVF-ERPHDEEFIRKWQLACKGNIAH 66
+D ++E+ L E+ T VF ++ H E + RKW + +I H
Sbjct: 185 EDGVLESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFAPSICH 229
>NUOG_PSEAE (Q9I0J6) NADH-quinone oxidoreductase chain 3 (EC
1.6.99.5) (NADH dehydrogenase I, chain G) (NDH-1, chain
G)
Length = 905
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 23 KDRLIEAGIGAMLNELSSTVVF-ERPHDEEFIRKWQLACKGNIAH 66
+D ++E+ L E+ T VF ++ H E + RKW + +I H
Sbjct: 185 EDGVLESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFAPSICH 229
>RPOB_WOLPI (Q93MK7) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1436
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 43 VFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLD 79
VFE P DE+ ++ ++LA N VV+ + EK D
Sbjct: 1280 VFEGPKDEQIVKLFELAGLDNSGQVVLYDGCSGEKFD 1316
>PFLA_ECOLI (P09374) Pyruvate formate-lyase 1 activating enzyme (EC
1.97.1.4) (PFL-activating enzyme)
Length = 245
Score = 28.9 bits (63), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 51 EFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQ 87
EF+R W ACK H + N + + D ++EL++
Sbjct: 85 EFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLE 121
>NUOG_PSESM (Q87ZQ4) NADH-quinone oxidoreductase chain 3 (EC
1.6.99.5) (NADH dehydrogenase I, chain G) (NDH-1, chain
G)
Length = 905
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 23 KDRLIEAGIGAMLNELSSTVVF-ERPHDEEFIRKWQLACKGNIAH 66
+D +E+ L E+ T VF ++ H E + RKW + +I H
Sbjct: 185 EDGTLESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFSPSICH 229
>NUOG_PSEFL (Q9KGW3) NADH-quinone oxidoreductase chain 3 (EC
1.6.99.5) (NADH dehydrogenase I, chain G) (NDH-1, chain
G)
Length = 904
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 23 KDRLIEAGIGAMLNELSSTVVF-ERPHDEEFIRKWQLACKGNIAH 66
+D +E+ L E+ T VF ++ H E + RKW + +I H
Sbjct: 185 EDGTLESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQFSPSICH 229
>GMHB_CHLTE (Q8KAY7) D,D-heptose 1,7-bisphosphate phosphatase (EC
3.1.3.-) (D-glycero-D-manno-heptose 1,7-bisphosphate
phosphatase)
Length = 199
Score = 28.5 bits (62), Expect = 2.8
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 7/78 (8%)
Query: 23 KDRLIEAGIGAMLNELSSTVVFERPHD------EEFIRKWQLACKGNIAHVVVMPNVTIE 76
+D I IG ++ ++ +R + E R + + IA +V P +E
Sbjct: 11 RDGTINRDIGRYVSSREEFILIDRADEAIAIAREAGFRIVLITNQAGIARGIVTPQ-DVE 69
Query: 77 KLDDFLNELVQKRATWFE 94
++D+LNEL+ +R T F+
Sbjct: 70 DVNDYLNELLAERQTSFD 87
>Y050_METJA (Q60358) Hypothetical protein MJ0050
Length = 396
Score = 28.1 bits (61), Expect = 3.6
Identities = 21/85 (24%), Positives = 37/85 (42%), Gaps = 11/85 (12%)
Query: 10 KEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKG------- 62
K V +C+ N Y +L E ++ + + V E +E +K L +G
Sbjct: 308 KIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDEDYKEVCKK--LRDRGIYVSVCN 365
Query: 63 --NIAHVVVMPNVTIEKLDDFLNEL 85
+VVMP++ E +D+F+ L
Sbjct: 366 CVKALRIVVMPHIKREHIDNFIEIL 390
>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome
regulatory subunit)
Length = 393
Score = 28.1 bits (61), Expect = 3.6
Identities = 18/71 (25%), Positives = 32/71 (44%), Gaps = 8/71 (11%)
Query: 19 AHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKL 78
A + +LI+ GI LN+ ST++ P E+ I K ++ PNVT ++
Sbjct: 85 ASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVK--------TMEIIERPNVTYSEI 136
Query: 79 DDFLNELVQKR 89
++ + R
Sbjct: 137 GGLEEQIRELR 147
>ATC8_YEAST (Q12674) Potential phospholipid-transporting ATPase DNF3
(EC 3.6.3.1)
Length = 1656
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/52 (38%), Positives = 24/52 (45%), Gaps = 4/52 (7%)
Query: 23 KDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKW----QLACKGNIAHVVVM 70
++ I G ML + STVV DE I K Q GNIAH VV+
Sbjct: 1118 RETAINIGYSCMLIKDYSTVVILTTTDENIISKMNAVSQEVDSGNIAHCVVV 1169
>AMYG_CLOS0 (P29761) Glucoamylase precursor (EC 3.2.1.3) (Glucan
1,4-alpha-glucosidase) (1,4-alpha-D-glucan
glucohydrolase)
Length = 702
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 75 IEKLDDFLNELVQK--RATWFEYGTFQPYCIASDVGENSCLAYV 116
++ L DF+ ++ K + W E G + P +A++V +C AY+
Sbjct: 435 VKPLADFIIKMGPKTGQERWEEIGGYSPATMAAEVAGLTCAAYI 478
>CAHX_FLAPR (P46281) Carbonic anhydrase (EC 4.2.1.1) (Carbonate
dehydratase)
Length = 329
Score = 26.9 bits (58), Expect = 8.1
Identities = 23/70 (32%), Positives = 27/70 (37%), Gaps = 3/70 (4%)
Query: 45 ERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEYGTFQPYCIA 104
E PH +FI W C + VV N T LDD L +K A G Y
Sbjct: 235 EGPHSTDFIEDWVKVCLPAKSKVVAEHNGT--HLDDQC-VLCEKEAVNVSLGNLLTYPFV 291
Query: 105 SDVGENSCLA 114
D N+ LA
Sbjct: 292 RDGLRNNTLA 301
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,477,366
Number of Sequences: 164201
Number of extensions: 513404
Number of successful extensions: 1659
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 21
length of query: 124
length of database: 59,974,054
effective HSP length: 100
effective length of query: 24
effective length of database: 43,553,954
effective search space: 1045294896
effective search space used: 1045294896
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136472.17