BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136472.10 + phase: 0
(427 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TUL3_HUMAN (O75386) Tubby related protein 3 (Tubby-like protein 3) 173 9e-43
TUB_HUMAN (P50607) Tubby protein homolog 167 6e-41
TUL1_HUMAN (O00294) Tubby related protein 1 (Tubby-like protein 1) 166 1e-40
TUL1_MOUSE (Q9Z273) Tubby related protein 1 (Tubby-like protein 1) 165 2e-40
TUB_RAT (O88808) Tubby protein homolog 165 2e-40
TUB_MOUSE (P50586) Tubby protein 165 2e-40
TUL3_MOUSE (O88413) Tubby related protein 3 (Tubby-like protein 3) 164 3e-40
TUL2_MOUSE (P46686) Tubby related protein 2 (Tubby-like protein ... 156 8e-38
TUB1_CAEEL (Q09306) Tubby protein homolog 1 146 1e-34
TUL2_HUMAN (O00295) Tubby related protein 2 (Tubby-like protein 2) 130 5e-30
TUL4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily prot... 63 2e-09
TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily prot... 62 2e-09
AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein 33 1.4
VP5_RDVF (Q85437) Minor core protein P5 33 1.8
VP5_RDVA (P14583) Minor core protein P5 33 1.8
FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26) 32 3.1
T230_HUMAN (Q93074) Thyroid hormone receptor-associated protein ... 31 5.3
FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26) 31 5.3
HD_MOUSE (P42859) Huntingtin (Huntington's disease protein homol... 31 6.9
FAT1_COCHE (O42633) Fatty acid transporter protein 31 6.9
>TUL3_HUMAN (O75386) Tubby related protein 3 (Tubby-like protein 3)
Length = 442
Score = 173 bits (438), Expect = 9e-43
Identities = 116/313 (37%), Positives = 163/313 (52%), Gaps = 68/313 (21%)
Query: 118 PGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTYTEYVISMD 175
P P+ ++C I RDK + LF L L E + FLL+A++ +++ Y+IS+D
Sbjct: 195 PAPQGVTVRCRIIRDKRGMDRGLFSHLLYVLGKEENQKIFLLAARKRKKSKTANYLISID 254
Query: 176 ADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICP-PGTGKTSRRFSKKVSPKVP 234
++SR +Y+GKLRSN +GTKF +YD ICP G G +++
Sbjct: 255 PVDLSREGESYVGKLRSNLMGTKFTVYDRG-------ICPMKGRGLVGAAHTRQ------ 301
Query: 235 SGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSI 294
+A ++YE NVLG +GPRKM I IP L+ +P QP+ H SL +++
Sbjct: 302 ----ELAAISYETNVLGFKGPRKMSVI---IPGMTLNHK-QIPYQPQNNHDSLLSRWQN- 352
Query: 295 SFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVT 354
+++++ +E L NK P W+ Q + LNFRGRVT
Sbjct: 353 ---RTMENLVE-------------------------LHNKAPVWNSDTQSYVLNFRGRVT 384
Query: 355 VASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFA 414
ASVKNFQL+ P D I++QFG+V D+FT+DY YPL A QAFA
Sbjct: 385 QASVKNFQLVHKNDP---------------DYIVMQFGRVADDVFTLDYNYPLCAVQAFA 429
Query: 415 ICLSSFDTKLACE 427
I LSSFD+KLACE
Sbjct: 430 ISLSSFDSKLACE 442
>TUB_HUMAN (P50607) Tubby protein homolog
Length = 506
Score = 167 bits (422), Expect = 6e-41
Identities = 116/315 (36%), Positives = 162/315 (50%), Gaps = 69/315 (21%)
Query: 117 QPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTYTEYVISM 174
+P P+ I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 257 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 316
Query: 175 DADNISRSSNTYIGKLRSNFLGTKFIIYDT--QPPCTSAHICPPGTGKTSRRFSKKVSPK 232
D ++SR ++YIGKLRSN +GTKF +YD P S+ GT +
Sbjct: 317 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 366
Query: 233 VPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFR 292
+A V YE NVLG +GPRKM I VPG ++H
Sbjct: 367 -------LAAVCYETNVLGFKGPRKMSVI--------------VPGM-NMVHER------ 398
Query: 293 SISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGR 352
+S +H E AR+ N++ + + L+NK P W++ Q + LNF GR
Sbjct: 399 -VSIRPRNEH--ETLLARWQ------NKNTESIIE---LQNKTPVWNDDTQSYVLNFHGR 446
Query: 353 VTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQA 412
VT ASVKNFQ+I P D I++QFG+V +D+FTMDY YPL A QA
Sbjct: 447 VTQASVKNFQIIHGNDP---------------DYIVMQFGRVAEDVFTMDYNYPLCALQA 491
Query: 413 FAICLSSFDTKLACE 427
FAI LSSFD+KLACE
Sbjct: 492 FAIALSSFDSKLACE 506
>TUL1_HUMAN (O00294) Tubby related protein 1 (Tubby-like protein 1)
Length = 542
Score = 166 bits (419), Expect = 1e-40
Identities = 113/311 (36%), Positives = 155/311 (49%), Gaps = 65/311 (20%)
Query: 117 QPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDA 176
+P P+ ++C + RDK + ++ L E FLL+ ++ +R+ Y+IS+D
Sbjct: 297 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 356
Query: 177 DNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSG 236
N+SR +IGKLRSN LG +F ++D G+ +R S V S
Sbjct: 357 TNLSRGGENFIGKLRSNLLGNRFTVFDN--------------GQNPQR---GYSTNVASL 399
Query: 237 SYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISF 296
+A V YE NVLG RGPR+M I IP + + VP +P R+ D
Sbjct: 400 RQELAAVIYETNVLGFRGPRRMTVI---IPGMSAE-NERVPIRP----RNASDGLLVRWQ 451
Query: 297 SKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVA 356
+K+L+ IE L NKPP W++ + LNF+GRVT A
Sbjct: 452 NKTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQA 486
Query: 357 SVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 416
SVKNFQ++ + P D I+LQFG+V +D FT+DYRYPL A QAFAI
Sbjct: 487 SVKNFQIVHADDP---------------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIA 531
Query: 417 LSSFDTKLACE 427
LSSFD KLACE
Sbjct: 532 LSSFDGKLACE 542
>TUL1_MOUSE (Q9Z273) Tubby related protein 1 (Tubby-like protein 1)
Length = 543
Score = 165 bits (418), Expect = 2e-40
Identities = 115/311 (36%), Positives = 152/311 (47%), Gaps = 65/311 (20%)
Query: 117 QPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDA 176
QP P+ ++C + RDK + ++ L E FLL+ ++ +R+ Y+IS D
Sbjct: 298 QPAPQGRAVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISSDP 357
Query: 177 DNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSG 236
N+SR +IGKLRSN LG +F ++D G+ +R V S
Sbjct: 358 TNLSRGGENFIGKLRSNLLGNRFTVFDN--------------GQNPQRGG---GGDVGSL 400
Query: 237 SYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISF 296
+A V YE NVLG RGPR+M I IP D VP +P R+ D
Sbjct: 401 RQELAAVVYETNVLGFRGPRRMTVI---IPGMNSD-NERVPIRP----RNASDGLLVRWQ 452
Query: 297 SKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVA 356
+K+L+ IE L NKPP W+E + LNF+GRVT A
Sbjct: 453 NKTLESLIE-------------------------LHNKPPIWNEDSGSYTLNFQGRVTQA 487
Query: 357 SVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 416
SVKNFQ++ + P D I+LQFG+V +D FT+DYRYPL A QAFAI
Sbjct: 488 SVKNFQIVHADDP---------------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIA 532
Query: 417 LSSFDTKLACE 427
LSSFD KLACE
Sbjct: 533 LSSFDGKLACE 543
>TUB_RAT (O88808) Tubby protein homolog
Length = 505
Score = 165 bits (417), Expect = 2e-40
Identities = 115/315 (36%), Positives = 161/315 (50%), Gaps = 69/315 (21%)
Query: 117 QPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTYTEYVISM 174
+P P+ I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 315
Query: 175 DADNISRSSNTYIGKLRSNFLGTKFIIYDT--QPPCTSAHICPPGTGKTSRRFSKKVSPK 232
D ++SR ++YIGKLRSN +GTKF +YD P S+ GT +
Sbjct: 316 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 365
Query: 233 VPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFR 292
+A V YE NVLG +GPRKM I VPG ++H
Sbjct: 366 -------LAAVCYETNVLGFKGPRKMSVI--------------VPGM-NMVHER------ 397
Query: 293 SISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGR 352
+ +H E AR+ N++ + + L+NK P W++ Q + LNF GR
Sbjct: 398 -VCIRPRNEH--ETLLARWQ------NKNTESIIE---LQNKTPVWNDDTQSYVLNFHGR 445
Query: 353 VTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQA 412
VT ASVKNFQ+I P D I++QFG+V +D+FTMDY YPL A QA
Sbjct: 446 VTQASVKNFQIIHGNDP---------------DYIVMQFGRVAEDVFTMDYNYPLCALQA 490
Query: 413 FAICLSSFDTKLACE 427
FAI LSSFD+KLACE
Sbjct: 491 FAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein
Length = 505
Score = 165 bits (417), Expect = 2e-40
Identities = 115/315 (36%), Positives = 161/315 (50%), Gaps = 69/315 (21%)
Query: 117 QPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTYTEYVISM 174
+P P+ I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 315
Query: 175 DADNISRSSNTYIGKLRSNFLGTKFIIYDT--QPPCTSAHICPPGTGKTSRRFSKKVSPK 232
D ++SR ++YIGKLRSN +GTKF +YD P S+ GT +
Sbjct: 316 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 365
Query: 233 VPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFR 292
+A V YE NVLG +GPRKM I VPG ++H
Sbjct: 366 -------LAAVCYETNVLGFKGPRKMSVI--------------VPGM-NMVHER------ 397
Query: 293 SISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGR 352
+ +H E AR+ N++ + + L+NK P W++ Q + LNF GR
Sbjct: 398 -VCIRPRNEH--ETLLARWQ------NKNTESIIE---LQNKTPVWNDDTQSYVLNFHGR 445
Query: 353 VTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQA 412
VT ASVKNFQ+I P D I++QFG+V +D+FTMDY YPL A QA
Sbjct: 446 VTQASVKNFQIIHGNDP---------------DYIVMQFGRVAEDVFTMDYNYPLCALQA 490
Query: 413 FAICLSSFDTKLACE 427
FAI LSSFD+KLACE
Sbjct: 491 FAIALSSFDSKLACE 505
>TUL3_MOUSE (O88413) Tubby related protein 3 (Tubby-like protein 3)
Length = 460
Score = 164 bits (416), Expect = 3e-40
Identities = 110/312 (35%), Positives = 157/312 (50%), Gaps = 66/312 (21%)
Query: 118 PGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTYTEYVISMD 175
P PR ++C + RDK + LF L E + FLL+ ++ +++ + Y++S D
Sbjct: 213 PAPRGVTVKCKVTRDKKGMDRGLFPTYYMHLEREENRKIFLLAGRKRKKSKTSNYLVSTD 272
Query: 176 ADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPS 235
++SR +YIGKLRSN +GTKF +YD A G + +++
Sbjct: 273 PTDLSREGESYIGKLRSNLMGTKFTVYDHGVNPVKAQ------GLVEKAHTRQ------- 319
Query: 236 GSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSIS 295
+A + YE NVLG +GPRKM I IP ++ +P +P H SL +++
Sbjct: 320 ---ELAAICYETNVLGFKGPRKMSVI---IPGMNMNHE-RIPFRPRNEHESLLSKWQN-- 370
Query: 296 FSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTV 355
KS+++ IE L NK P W++ Q + LNF GRVT
Sbjct: 371 --KSMENLIE-------------------------LHNKAPVWNDDTQSYVLNFHGRVTQ 403
Query: 356 ASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAI 415
ASVKNFQ++ P D I++QFG+V D+FT+DY YPL A QAFAI
Sbjct: 404 ASVKNFQIVHGNDP---------------DYIVMQFGRVADDVFTLDYNYPLCALQAFAI 448
Query: 416 CLSSFDTKLACE 427
LSSFD+KLACE
Sbjct: 449 GLSSFDSKLACE 460
>TUL2_MOUSE (P46686) Tubby related protein 2 (Tubby-like protein 2)
(P4-6 protein) (Fragment)
Length = 564
Score = 156 bits (395), Expect = 8e-38
Identities = 110/312 (35%), Positives = 158/312 (50%), Gaps = 66/312 (21%)
Query: 118 PGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENG--KFLLSAKRTRRTTYTEYVISMD 175
P PRD ++Q I R+K + +F L E+G FLL+ ++ +R+ + Y+IS+D
Sbjct: 317 PAPRDHMVQWRIVRNKHGMDKGMFPSYYLYLEGEDGVAHFLLAGRKRKRSKTSNYLISLD 376
Query: 176 ADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPS 235
++SR+ + ++GK+RSN LGTKF I+D ++ P S R ++
Sbjct: 377 PKDMSRNGSNFVGKVRSNVLGTKFTIFDNGVNPERSYWVPD-----SARIREE------- 424
Query: 236 GSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSIS 295
+ V YE NVLG RGPRKM I+ + + + QP+ + +DS S
Sbjct: 425 ----LGVVCYETNVLGFRGPRKMTVILPGMDSRKQ----RMKVQPQ----NDQDSILS-R 471
Query: 296 FSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTV 355
K H + L+L+NK P W ++ + LNF GRVT
Sbjct: 472 VQKGAGHGL------------------------LLLQNKAPSWSDESGAYVLNFHGRVTR 507
Query: 356 ASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAI 415
ASVKNFQ++ P E D ++LQFG+V ++FTMD+RYPL QAFAI
Sbjct: 508 ASVKNFQIVH---------------PDEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAI 552
Query: 416 CLSSFDTKLACE 427
CLSSFD KLACE
Sbjct: 553 CLSSFDGKLACE 564
>TUB1_CAEEL (Q09306) Tubby protein homolog 1
Length = 426
Score = 146 bits (368), Expect = 1e-34
Identities = 104/319 (32%), Positives = 155/319 (47%), Gaps = 69/319 (21%)
Query: 115 LKQPGPRDGIIQCFIKRDKSNLTYHLF----LCLSPALLVENGK-FLLSAKRTRRTTYTE 169
++ P + +C I R KS + +F L L + K FLL+A++ +++T
Sbjct: 171 VEDPAVEHCLYKCSITRQKSGVDKGMFPTYFLHLEEFDTDKRQKIFLLAARKRKKSTTAN 230
Query: 170 YVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKV 229
Y++S D N+SR Y K+RSN LGT+F +YD+ G+ ++ +
Sbjct: 231 YLLSTDPTNLSREGEGYCAKVRSNALGTQFTVYDS--------------GQNPKKTTNHA 276
Query: 230 SPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSI-PNSALDAGGSVPGQPELIHRSLE 288
+ + +A V YE NVLG +GPRKM +M I P + P +P +L
Sbjct: 277 AIR-----QELAAVIYETNVLGFKGPRKMTIVMPGIEPPTENRPAVRCPVRPIQDKHTLL 331
Query: 289 DSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLN 348
+ +R N+ D K +L NK P+W+++ Q + LN
Sbjct: 332 ERYR-------------------------LNDLDSLK----ILSNKSPQWNDETQSYVLN 362
Query: 349 FRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLS 408
F GRVT ASVKNFQ+I + P + I++QFG++ D FTMD+RYPLS
Sbjct: 363 FHGRVTQASVKNFQIIHQSSP---------------EYIVMQFGRISDDEFTMDFRYPLS 407
Query: 409 AFQAFAICLSSFDTKLACE 427
A QAF I ++SF KLACE
Sbjct: 408 AVQAFGIAMTSFHGKLACE 426
>TUL2_HUMAN (O00295) Tubby related protein 2 (Tubby-like protein 2)
Length = 520
Score = 130 bits (328), Expect = 5e-30
Identities = 99/304 (32%), Positives = 143/304 (46%), Gaps = 74/304 (24%)
Query: 124 IIQCFIKRDKSNLT------YHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDAD 177
++QC++ RDK + Y+L+L S +L +FLL+ ++ RR+ + Y+IS+D
Sbjct: 285 MMQCYLTRDKHGVDKGLFPLYYLYLETSDSLQ----RFLLAGRKRRRSKTSNYLISLDPT 340
Query: 178 NISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSGS 237
+SR + ++GK+RSN TKF I+D H+ T T+R +
Sbjct: 341 LLSRDGDNFVGKVRSNVFSTKFTIFDNGVNPDREHL----TRNTARIRQE---------- 386
Query: 238 YNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFS 297
+ V YE NVLG GPRKM I+ PG +
Sbjct: 387 --LGAVCYEPNVLGYLGPRKMTVIL--------------PG------------------T 412
Query: 298 KSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVAS 357
S + I E S + D K L+L NK P W ++ + LNF GRVT AS
Sbjct: 413 NSQNQRINVQPLNEQESLLSRYQRGD-KQGLLLLHNKTPSWDKENGVYTLNFHGRVTRAS 471
Query: 358 VKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICL 417
VKNFQ++ P + ++LQFG+VG D FTMD+ +P S QAF+ICL
Sbjct: 472 VKNFQIVD---------------PKHQEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICL 516
Query: 418 SSFD 421
SSF+
Sbjct: 517 SSFN 520
>TUL4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)
Length = 1547
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 22/110 (20%)
Query: 319 NEDDDGKMRP----LVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAP 374
+E +DG++ V+ NK P W+E Q + L+F GRVT S KNFQ+
Sbjct: 1455 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------- 1503
Query: 375 TPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKL 424
+ ++QFG++ + + +D++YP SA QAFA+ L++ +L
Sbjct: 1504 -------ELEGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRL 1546
>TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)
Length = 1544
Score = 62.4 bits (150), Expect = 2e-09
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 22/110 (20%)
Query: 319 NEDDDGKMRP----LVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAP 374
+E +DG++ V+ NK P W+E Q + L+F GRVT S KNFQ+
Sbjct: 1452 SEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------- 1500
Query: 375 TPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKL 424
+ ++QFG++ + +D++YP SA QAFA+ L++ +L
Sbjct: 1501 -------ELEGRQVMQFGRIDGSAYILDFQYPFSAVQAFAVALANVTQRL 1543
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein
Length = 1723
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 193 NFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRF 225
NF G ++++ + PC SA CPPG S RF
Sbjct: 1462 NFTGNQYVLEEGHYPCLSAMGCPPGATFKSLRF 1494
>VP5_RDVF (Q85437) Minor core protein P5
Length = 801
Score = 32.7 bits (73), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 56 NLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSL 115
NL L FD + W SR+ V+ A +C+S+ M + SP+ G L ++L
Sbjct: 738 NLDKSLFFDNKVTPSGALQRWHSREEVLLAAEICESYAAMMLNNKHSPDIIGTLKSAINL 797
>VP5_RDVA (P14583) Minor core protein P5
Length = 801
Score = 32.7 bits (73), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 56 NLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSL 115
NL L FD + W SR+ V+ A +C+S+ M + SP+ G L ++L
Sbjct: 738 NLDKSLFFDNKVTPSGALQRWHSREEVLLAAEICESYAAMMLNNKHSPDIIGTLKSAINL 797
>FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)
Length = 278
Score = 32.0 bits (71), Expect = 3.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 57 LPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSP 103
LPPELL V+ + P R V C VC++WR DIV P
Sbjct: 21 LPPELLVQVLSHV-------PPRSLVTRCRPVCRAWR----DIVDGP 56
>T230_HUMAN (Q93074) Thyroid hormone receptor-associated protein
complex 230 kDa component (Trap230) (Activator-recruited
cofactor 240 KDa component) (ARC240) (CAG repeat protein
45) (OPA-containing protein) (Trinucleotide repeat
containing 11)
Length = 2212
Score = 31.2 bits (69), Expect = 5.3
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 19 RRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPS 78
R ++ +K+T ++ S V+ H P + W + + L++ ++++ E P+
Sbjct: 190 RAAWLIKMTCAYYAAISETKVKKRHVDPFME----WTQIITKYLWEQLQKMAEYYRPGPA 245
Query: 79 RKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSLKQPGPRDG------IIQCFIKRD 132
C S + + +R ++ KL + + Q G D +++CF K
Sbjct: 246 GSG--GCGSTIGPLPHDVEVAIRQWDYTEKLA--MFMFQDGMLDRHEFLTWVLECFEKIR 301
Query: 133 KSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTY-TEYVISMDADNISRSSNTYIGKLR 191
L L P LL +G+F+ SA +RR Y +++ D +S S+ I
Sbjct: 302 PGE--DELLKLLLPLLLRYSGEFVQSAYLSRRLAYFCTRRLALQLDGVSSHSSHVISAQS 359
Query: 192 SNFLGTKFIIYDTQPPCTSAHICP 215
++ L T QPP +S P
Sbjct: 360 TSTLPT---TPAPQPPTSSTPSTP 380
>FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)
Length = 286
Score = 31.2 bits (69), Expect = 5.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 57 LPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNM 95
LPPELL V+ + P R V C VC++WR++
Sbjct: 21 LPPELLVQVLSHV-------PPRALVTRCRPVCRAWRDL 52
>HD_MOUSE (P42859) Huntingtin (Huntington's disease protein homolog)
(HD protein)
Length = 3119
Score = 30.8 bits (68), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 357 SVKNFQLIASTQPPAGAPTPSQPAPPE 383
S+K+FQ QPP AP P P PP+
Sbjct: 13 SLKSFQQQQQQQPPPQAPPPPPPPPPQ 39
>FAT1_COCHE (O42633) Fatty acid transporter protein
Length = 643
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Query: 208 CTSAHICPPGTGKTSRRFS-KKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSI 265
CT++ I GT SR+FS KK P+V + NI Q EL GP+ + H +
Sbjct: 287 CTASVIHGGGTVVLSRKFSHKKFWPEVVASEANIIQYVGELGRYLLNGPKSPYDRAHKV 345
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,817,065
Number of Sequences: 164201
Number of extensions: 2406619
Number of successful extensions: 6526
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6466
Number of HSP's gapped (non-prelim): 31
length of query: 427
length of database: 59,974,054
effective HSP length: 113
effective length of query: 314
effective length of database: 41,419,341
effective search space: 13005673074
effective search space used: 13005673074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC136472.10