BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136286.5 + phase: 1 /partial
         (107 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MIAA_XYLFT (Q87F70) tRNA delta(2)-isopentenylpyrophosphate trans...    30  1.3
MIAA_XYLFA (Q9PH56) tRNA delta(2)-isopentenylpyrophosphate trans...    28  2.9
NU5M_ACACA (Q37372) NADH-ubiquinone oxidoreductase chain 5 (EC 1...    27  8.6

>MIAA_XYLFT (Q87F70) tRNA delta(2)-isopentenylpyrophosphate
           transferase (EC 2.5.1.8) (IPP transferase)
           (Isopentenyl-diphosphate:tRNA isopentenyltransferase)
           (IPTase) (IPPT)
          Length = 317

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 10/32 (31%), Positives = 17/32 (52%)

Query: 74  CWQHIRYLYSLEFRFYRCCQALHIISKRSFFW 105
           CW+H+  +Y+ E  + R   A   ++KR   W
Sbjct: 257 CWEHLDGMYTAEMLYQRSVAATRQLAKRQLTW 288


>MIAA_XYLFA (Q9PH56) tRNA delta(2)-isopentenylpyrophosphate
           transferase (EC 2.5.1.8) (IPP transferase)
           (Isopentenyl-diphosphate:tRNA isopentenyltransferase)
           (IPTase) (IPPT)
          Length = 317

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (52%)

Query: 74  CWQHIRYLYSLEFRFYRCCQALHIISKRSFFW 105
           CW+H+  +Y+ E  + R   A   ++KR   W
Sbjct: 257 CWEHLDNMYTAETLYQRGVAATRQLAKRQLTW 288


>NU5M_ACACA (Q37372) NADH-ubiquinone oxidoreductase chain 5 (EC
           1.6.5.3)
          Length = 675

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 5   ARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQ 64
           A +H +  V  G  VL+ S  + +++S+  G F +S  G +   F  + G  QYD  +K 
Sbjct: 255 ALIHAATMVTAGVFVLIRSSPILEYSST--GLFLVSLIGGLTALFAGTVGLVQYD-IKKV 311

Query: 65  VSY 67
           ++Y
Sbjct: 312 IAY 314


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.142    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,882,054
Number of Sequences: 164201
Number of extensions: 431291
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 3
length of query: 107
length of database: 59,974,054
effective HSP length: 83
effective length of query: 24
effective length of database: 46,345,371
effective search space: 1112288904
effective search space used: 1112288904
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)