BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136142.5 - phase: 0
(166 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NUYM_HUMAN (O43181) NADH-ubiquinone oxidoreductase 18 kDa subuni... 89 5e-18
NUYM_BOVIN (Q02375) NADH-ubiquinone oxidoreductase 18 kDa subuni... 88 8e-18
NUYM_MOUSE (Q9CXZ1) NADH-ubiquinone oxidoreductase 18 kDa subuni... 87 2e-17
NUYM_NEUCR (P25711) NADH-ubiquinone oxidoreductase 21 kDa subuni... 65 9e-11
NUO2_SOLTU (P80268) NADH-ubiquinone oxidoreductase 18 kDa subuni... 48 1e-05
MDR1_LEIEN (Q06034) Multidrug resistance protein 1 (P-glycoprote... 32 0.87
ZBT4_HUMAN (Q9P1Z0) Zinc finger and BTB domain containing protei... 30 3.3
POR2_HUMAN (P45880) Voltage-dependent anion-selective channel pr... 29 4.3
Y856_VIBVY (Q7MN61) Hypothetical UPF0255 protein VV0856 29 5.6
Y328_VIBVU (Q8DF91) Hypothetical UPF0255 protein VV10328 29 5.6
XSC_ALCXX (Q84H41) Sulfoacetaldehyde acetyltransferase (EC 2.3.3... 29 5.6
LRP3_RAT (O88204) Low-density lipoprotein receptor-related prote... 28 7.3
T1S1_ECOLI (P10485) Type I restriction enzyme EcoR124II specific... 28 9.6
MUTS_BORPE (Q7VY01) DNA mismatch repair protein mutS 28 9.6
MUTS_BORPA (Q7W880) DNA mismatch repair protein mutS 28 9.6
MUTS_BORBR (Q7WLT5) DNA mismatch repair protein mutS 28 9.6
LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related pro... 28 9.6
ETS2_CHICK (P10157) C-ETS-2 protein 28 9.6
DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA p... 28 9.6
>NUYM_HUMAN (O43181) NADH-ubiquinone oxidoreductase 18 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ)
(CI-AQDQ)
Length = 175
Score = 89.0 bits (219), Expect = 5e-18
Identities = 41/92 (44%), Positives = 61/92 (65%), Gaps = 4/92 (4%)
Query: 35 EIGLVSGIPQEHLR-RRVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGD 93
+I ++G+P+EH++ R+V I+ PAR Q G N +W++ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 94 PYSHVGDSALDFDTEEAAKEFAERHGWEYVAE 125
P S++ L F T+E A FAE++GW Y E
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIE 148
>NUYM_BOVIN (Q02375) NADH-ubiquinone oxidoreductase 18 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ)
(CI-AQDQ)
Length = 175
Score = 88.2 bits (217), Expect = 8e-18
Identities = 40/92 (43%), Positives = 60/92 (64%), Gaps = 4/92 (4%)
Query: 35 EIGLVSGIPQEHLR-RRVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGD 93
+I ++G+P+EH++ R+ I+ PAR Q G N +W++ F + ++WENPLMGW ST D
Sbjct: 60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 94 PYSHVGDSALDFDTEEAAKEFAERHGWEYVAE 125
P S++ L F T+E A FAE++GW Y E
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDVE 148
>NUYM_MOUSE (Q9CXZ1) NADH-ubiquinone oxidoreductase 18 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-18 kDa) (CI-18 kDa) (Complex I-AQDQ)
(CI-AQDQ)
Length = 175
Score = 86.7 bits (213), Expect = 2e-17
Identities = 40/92 (43%), Positives = 60/92 (64%), Gaps = 4/92 (4%)
Query: 35 EIGLVSGIPQEHLR-RRVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGD 93
+I ++G+P+EH++ R+V I+ PAR Q G N +W++ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 94 PYSHVGDSALDFDTEEAAKEFAERHGWEYVAE 125
P S++ L F +E A FAE++GW Y E
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDVE 148
>NUYM_NEUCR (P25711) NADH-ubiquinone oxidoreductase 21 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-21KD) (CI-21KD)
Length = 218
Score = 64.7 bits (156), Expect = 9e-11
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 38 LVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQK---WENPLMGWTSTGDP 94
+VSG P E R V IY P++ A Q + V WR+++ +K WEN LMGW S+GD
Sbjct: 103 VVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD- 160
Query: 95 YSHVGDSALDFDTEEAAKEFAERHGWEYVAEGLNIIH 131
V + L F T+E A +FAE+ G+EY + N H
Sbjct: 161 --FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRH 195
>NUO2_SOLTU (P80268) NADH-ubiquinone oxidoreductase 18 kDa subunit
(EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD)
(Fragment)
Length = 30
Score = 47.8 bits (112), Expect = 1e-05
Identities = 22/30 (73%), Positives = 27/30 (89%)
Query: 24 STDALVESKPGEIGLVSGIPQEHLRRRVLI 53
+++ALVE KPGEIG+VSGIP EHLRR V+I
Sbjct: 1 ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30
>MDR1_LEIEN (Q06034) Multidrug resistance protein 1 (P-glycoprotein 1)
Length = 1280
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 101 SALDFDTEEAAKEFAERHGWEYVAEGLNIIHRF----HCDFSNLNDSGIIISSFHH 152
SALD TE +E E +Y ++I HR HCD L DSG II H
Sbjct: 1203 SALDSVTEAKVQEGIEAFQAKYKVTTVSIAHRLTTIRHCDQIILLDSGCIIEQGSH 1258
>ZBT4_HUMAN (Q9P1Z0) Zinc finger and BTB domain containing protein 4
(KAISO-like zinc finger protein 1) (KAISO-L1)
Length = 1013
Score = 29.6 bits (65), Expect = 3.3
Identities = 25/91 (27%), Positives = 33/91 (35%), Gaps = 16/91 (17%)
Query: 44 QEHLRRRVLIYSPARTAGQQGSGNVG-----------RWRINFLSTQKWENPLMGWTSTG 92
++ L R Y P R AG G +VG RWR L + WE + G
Sbjct: 660 EDQLWRPYYSYKPKRKAGAAGGASVGGSGLPRGRRPPRWR-QKLERRSWEETPAAESPAG 718
Query: 93 ----DPYSHVGDSALDFDTEEAAKEFAERHG 119
+ GD A F T ++ E HG
Sbjct: 719 RARTERRHRCGDCAQTFTTLRKLRKHQEAHG 749
>POR2_HUMAN (P45880) Voltage-dependent anion-selective channel
protein 2 (VDAC-2) (hVDAC2) (Outer mitochondrial
membrane protein porin 2)
Length = 347
Score = 29.3 bits (64), Expect = 4.3
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 115 AERHGWEYVAEGLNIIHRFHCD 136
AER+ WE+++E L +I+ FHCD
Sbjct: 312 AERNLWEWISEDLALIY-FHCD 332
>Y856_VIBVY (Q7MN61) Hypothetical UPF0255 protein VV0856
Length = 415
Score = 28.9 bits (63), Expect = 5.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 65 SGNVGRWRIN---FLSTQKWENPLMGWTSTGDPYSHVGDSAL--DFDTEEAAKEFAER 117
SG + W + FLS++K + P++ + GDP S D+ + F T AK+ + +
Sbjct: 335 SGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSK 392
>Y328_VIBVU (Q8DF91) Hypothetical UPF0255 protein VV10328
Length = 415
Score = 28.9 bits (63), Expect = 5.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 65 SGNVGRWRIN---FLSTQKWENPLMGWTSTGDPYSHVGDSAL--DFDTEEAAKEFAER 117
SG + W + FLS++K + P++ + GDP S D+ + F T AK+ + +
Sbjct: 335 SGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSK 392
>XSC_ALCXX (Q84H41) Sulfoacetaldehyde acetyltransferase (EC
2.3.3.15)
Length = 602
Score = 28.9 bits (63), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 72 RINFLSTQK--WENPLMGWTSTGDPYS 96
R + ++T+K WE L GWT DPYS
Sbjct: 355 RADTIATEKAAWEKELDGWTHERDPYS 381
>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein
3 precursor (rLRp105)
Length = 770
Score = 28.5 bits (62), Expect = 7.3
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 19/92 (20%)
Query: 19 LIRRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLST 78
L+ F T L + P + SG ++H RR +IYSPA W +N+
Sbjct: 24 LVNLFLTGRLSSAVPA-LAACSGKLEQHTERRGVIYSPA-------------WPLNYPPG 69
Query: 79 QKWENPLMGWTSTGDPYSHVGDSALDFDTEEA 110
W GD + S +FD EE+
Sbjct: 70 TN-----CSWYIQGDRGDMITISFRNFDVEES 96
>T1S1_ECOLI (P10485) Type I restriction enzyme EcoR124II specificity
protein (S protein) (S.EcoR124II)
Length = 410
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 66 GNVGRWRINFLSTQK----WENPLMGWTSTGDPYSHVGDSALDFDTEEA 110
G +G+W ++ WEN + W S D + DS+ D+ TEEA
Sbjct: 211 GEIGKWYGGGTPSKNKIEFWENGSIPWISPKDMGRTLVDSSEDYITEEA 259
>MUTS_BORPE (Q7VY01) DNA mismatch repair protein mutS
Length = 883
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/93 (25%), Positives = 35/93 (36%), Gaps = 14/93 (15%)
Query: 37 GLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQ-------KW--ENPLMG 87
G +P+++ RR+ L + A + + + W LS Q KW E L
Sbjct: 500 GQTDKVPEDYRRRQTL-----KNAERYITPELKTWEDRVLSAQDRSLAREKWLYEQLLDA 554
Query: 88 WTSTGDPYSHVGDSALDFDTEEAAKEFAERHGW 120
P S + + DT A E A RH W
Sbjct: 555 LAQYVRPLSQCASALAELDTLAALAEHARRHDW 587
>MUTS_BORPA (Q7W880) DNA mismatch repair protein mutS
Length = 883
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/93 (25%), Positives = 35/93 (36%), Gaps = 14/93 (15%)
Query: 37 GLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQ-------KW--ENPLMG 87
G +P+++ RR+ L + A + + + W LS Q KW E L
Sbjct: 500 GQTDKVPEDYRRRQTL-----KNAERYITPELKTWEDRVLSAQDRSLAREKWLYEQLLDA 554
Query: 88 WTSTGDPYSHVGDSALDFDTEEAAKEFAERHGW 120
P S + + DT A E A RH W
Sbjct: 555 LAQYVRPLSQCASALAELDTLAALAEHARRHDW 587
>MUTS_BORBR (Q7WLT5) DNA mismatch repair protein mutS
Length = 876
Score = 28.1 bits (61), Expect = 9.6
Identities = 24/93 (25%), Positives = 35/93 (36%), Gaps = 14/93 (15%)
Query: 37 GLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQ-------KW--ENPLMG 87
G +P+++ RR+ L + A + + + W LS Q KW E L
Sbjct: 493 GQTDKVPEDYRRRQTL-----KNAERYITPELKTWEDRVLSAQDRSLAREKWLYEQLLDA 547
Query: 88 WTSTGDPYSHVGDSALDFDTEEAAKEFAERHGW 120
P S + + DT A E A RH W
Sbjct: 548 LAQYVRPLSQCASALAELDTLAALAEHARRHDW 580
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related
protein 3 precursor (hLRp105)
Length = 770
Score = 28.1 bits (61), Expect = 9.6
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 19/92 (20%)
Query: 19 LIRRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLST 78
L+ F T L + P + SG ++H RR +IYSPA W +N+
Sbjct: 24 LVNIFLTGRLSSAVPA-LAACSGKLEQHTERRGVIYSPA-------------WPLNYPPG 69
Query: 79 QKWENPLMGWTSTGDPYSHVGDSALDFDTEEA 110
W GD + S +FD EE+
Sbjct: 70 TN-----CSWYIQGDRGDMITISFRNFDVEES 96
>ETS2_CHICK (P10157) C-ETS-2 protein
Length = 479
Score = 28.1 bits (61), Expect = 9.6
Identities = 29/102 (28%), Positives = 39/102 (37%), Gaps = 28/102 (27%)
Query: 60 AGQQGSGNVGRWRINF-LSTQKWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERH 118
AG GSG + W+ L T K + WT G + D +E A+ + R
Sbjct: 365 AGFTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLA-------DPDEVARRWGRRK 417
Query: 119 G-----WEYVAEGL------NIIH---------RFHCDFSNL 140
+E ++ GL NIIH RF CD NL
Sbjct: 418 NKPKMNYEKLSRGLRYYYDKNIIHKTSGKRYVYRFVCDLQNL 459
>DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA
polymerase) [Contains: Endonuclease PI-PspI (EC 3.1.-.-)
(Psp-GDB pol intein)]
Length = 1312
Score = 28.1 bits (61), Expect = 9.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 77 STQKWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEF 114
S +KW+N GW+ T Y+ D LD D E AK+F
Sbjct: 782 SARKWKNQTGGWSYTVRLYNE-NDEVLD-DMEHLAKKF 817
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,815,316
Number of Sequences: 164201
Number of extensions: 814882
Number of successful extensions: 1831
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1816
Number of HSP's gapped (non-prelim): 20
length of query: 166
length of database: 59,974,054
effective HSP length: 102
effective length of query: 64
effective length of database: 43,225,552
effective search space: 2766435328
effective search space used: 2766435328
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC136142.5