BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136141.8 - phase: 0
(339 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 52 2e-06
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 52 2e-06
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 52 2e-06
NHR1_RABIT (Q28619) Ezrin-radixin-moesin binding phosphoprotein ... 40 0.011
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.054
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 37 0.054
MINT_HUMAN (Q96T58) Msx2-interacting protein (SMART/HDAC1 associ... 37 0.071
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.093
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 37 0.093
HMES_DROME (P18488) Empty spiracles homeotic protein 37 0.093
AR5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protei... 37 0.093
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.16
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 36 0.16
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 36 0.16
HA34_BRELC (Q99074) HAM34 protein 36 0.16
DAM2_MOUSE (Q80U19) Disheveled associated activator of morphogen... 36 0.16
NCA1_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa iso... 35 0.21
YK25_YEAST (P36138) Hypothetical 21.1 kDa protein in GAP1-NAP1 i... 35 0.27
PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytom... 35 0.27
MINT_MOUSE (Q62504) Msx2-interacting protein (SMART/HDAC1 associ... 35 0.27
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 52.4 bits (124), Expect = 2e-06
Identities = 42/136 (30%), Positives = 62/136 (44%), Gaps = 9/136 (6%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE ++ P + + K D + T+KE+L + +M + K
Sbjct: 1128 MTPFEIVHRYSPALSPLELPSFSD--KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMK 1185
Query: 61 RKDCT-FVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
++ F G LV ++ R T S KLA + GPF +L++ GP YELDLP S
Sbjct: 1186 IQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSI 1241
Query: 120 R--IHPVIHVSQLREY 133
+ HVS L +Y
Sbjct: 1242 KHMFSSTFHVSHLEKY 1257
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 52.4 bits (124), Expect = 2e-06
Identities = 42/136 (30%), Positives = 62/136 (44%), Gaps = 9/136 (6%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE ++ P + + K D + T+KE+L + +M + K
Sbjct: 1128 MTPFEIVHRYSPALSPLELPSFSD--KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMK 1185
Query: 61 RKDCT-FVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
++ F G LV ++ R T S KLA + GPF +L++ GP YELDLP S
Sbjct: 1186 IQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSI 1241
Query: 120 R--IHPVIHVSQLREY 133
+ HVS L +Y
Sbjct: 1242 KHMFSSTFHVSHLEKY 1257
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 52.4 bits (124), Expect = 2e-06
Identities = 42/136 (30%), Positives = 62/136 (44%), Gaps = 9/136 (6%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
MTPFE ++ P + + K D + T+KE+L + +M + K
Sbjct: 1128 MTPFEIVHRYSPALSPLELPSFSD--KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMK 1185
Query: 61 RKDCT-FVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLPPSS 119
++ F G LV ++ R T S KLA + GPF +L++ GP YELDLP S
Sbjct: 1186 IQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSI 1241
Query: 120 R--IHPVIHVSQLREY 133
+ HVS L +Y
Sbjct: 1242 KHMFSSTFHVSHLEKY 1257
>NHR1_RABIT (Q28619) Ezrin-radixin-moesin binding phosphoprotein 50
(EBP50) (Na(+)/H(+) exchange regulatory cofactor NHE-RF)
(NHERF-1) (Regulatory cofactor of Na(+)/H(+) exchanger)
(Sodium-hydrogen exchanger regulatory factor 1) (Solute
carrier family 9 i
Length = 358
Score = 39.7 bits (91), Expect = 0.011
Identities = 56/225 (24%), Positives = 85/225 (36%), Gaps = 29/225 (12%)
Query: 137 DPDGHFRPIPPEVANNLFNES--PENNHQDTAEGRQEPETGKEGQEKEKVISQMREKEPG 194
D D FR + ++ L PE A G Q P E +E EK + RE P
Sbjct: 94 DTDEQFRKLGVQIRGELLRAQAGPEQAGPPAAPGEQGPAGENEPREVEKSHPERRELRPR 153
Query: 195 I----EKVNYSSTNVSSAVFKQGQMTLVPLDASQPQDACS-TTQDKYPPLNPITTVGNQ- 248
+ + N N+ S + GQ + +D P +A QD+ +N + G Q
Sbjct: 154 LCAMKKGPNGYGFNLHSDKSRPGQF-IRAVDPDSPAEASGLREQDRIVEVNGVCVEGKQH 212
Query: 249 --TLTDAPAS---------PKITPSFIQSPPSDPTTNHINGQHTTPCQLTESHR------ 291
+T A K T F + P++ H+NG P E +
Sbjct: 213 GDVVTAIKAGGDEAKLLVVDKETDEFFKKCKVVPSSEHLNGPLPEPFTNGEIQKNNPETL 272
Query: 292 APSHTEEHKPNLEVKVSSGPDSSDRILDSHRSKR-ITTKPVWTKS 335
AP+ +E +P L SS D+S+ + K+ +T P T S
Sbjct: 273 APAASESPRPALARSASS--DTSEELASQDSPKKEDSTAPSSTSS 315
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 37.4 bits (85), Expect = 0.054
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + + + + + AH++ + +E + + +Q
Sbjct: 1053 LTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLDQP 1112
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
F +G VW+R R + L R+ GP+ +L P A ++D
Sbjct: 1113 VIPHPFRIGDSVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 1155
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 37.4 bits (85), Expect = 0.054
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + + + + + AH++ + +E + + +Q
Sbjct: 700 LTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLDQP 759
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
F +G VW+R R + L R+ GP+ +L P A ++D
Sbjct: 760 VIPHPFRIGDSVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 802
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SMART/HDAC1 associated
repressor protein)
Length = 3664
Score = 37.0 bits (84), Expect = 0.071
Identities = 56/240 (23%), Positives = 85/240 (35%), Gaps = 48/240 (20%)
Query: 130 LREYHGQDPDGHFR------PIPPEVANNL-FNESPENNH--QDTAEGRQEPETGKEGQ- 179
L Y GQ +G R IPP A ++ F +S + D+ Q P G +
Sbjct: 2816 LLSYSGQKTEGPQRISAKISQIPPASAMDIEFQQSVSKSQVKPDSVTASQPPSKGPQAPA 2875
Query: 180 ------------------EKEKVISQMREKEPGIEKVNYSSTNVSSAVFKQGQMTLVPLD 221
VIS ++ P +EK +VS+ V + G + ++
Sbjct: 2876 GYANVATHSTLVLTAQTYNASPVISSVKADRPSLEKPEPIHLSVSTPVTQGGTVKVLTQG 2935
Query: 222 ASQPQ----------DACSTTQDKYPPLNPITT-VGNQTLTDAPASPKITPSFIQSPPSD 270
+ P + TT K +P+T + + L A +TP + PS
Sbjct: 2936 INTPPVLVHNQLVLTPSIVTTNKKLA--DPVTLKIETKVLQPANLGSTLTPHHPPALPSK 2993
Query: 271 PTT--NHINGQHTTPCQLTESHRAPSHTEEHKPNLEVKVSSGPDSSDRILDSHRSKRITT 328
T NH+ + P T SH A + + H P SGP S SH S +T
Sbjct: 2994 LPTEVNHVPSGPSIPADRTVSHLAAAKLDAHSPR-----PSGPGPSSFPRASHPSSTAST 3048
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 36.6 bits (83), Expect = 0.093
Identities = 33/119 (27%), Positives = 52/119 (42%), Gaps = 21/119 (17%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + T V + AH++ L+ ++ + R A Q+
Sbjct: 1053 LTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQ-ALYLVQHEVWRPL----AAAYQE 1107
Query: 61 RKDCTFV-----VGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
+ D V VG VW+R R + L R+ GP+ +L P A ++D
Sbjct: 1108 QLDRPVVPHPYRVGDTVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 1155
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 36.6 bits (83), Expect = 0.093
Identities = 33/119 (27%), Positives = 52/119 (42%), Gaps = 21/119 (17%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + T V + AH++ L+ ++ + R A Q+
Sbjct: 139 LTPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQ-ALYLVQHEVWRPL----AAAYQE 193
Query: 61 RKDCTFV-----VGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
+ D V VG VW+R R + L R+ GP+ +L P A ++D
Sbjct: 194 QLDRPVVPHPYRVGDTVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 241
>HMES_DROME (P18488) Empty spiracles homeotic protein
Length = 497
Score = 36.6 bits (83), Expect = 0.093
Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 27/207 (13%)
Query: 107 GPVAYELDLPPSSRI-HPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNESPENNHQDT 165
G + L PP+ + +P H Q ++ H Q P H P + HQ
Sbjct: 77 GSPPHHLMAPPAHGLPYPHPHAQQQQQQHLQAPHPHPHLSPAQ---------QHVLHQHL 127
Query: 166 AEGRQEPETGKEGQEKEKVISQMREKEPGIEKVNYSSTNVSSAVFKQGQMTLVPLDASQP 225
Q P T K Q+ ++++ ++ N + A T + + QP
Sbjct: 128 LMQHQHPGTPKSHQDIQELLQRLHH-------------NAAMASGLSPLQTRLSPETEQP 174
Query: 226 QDACSTTQDKYPPLNPITTVGNQTLT-DAPASPKITPSFIQSPPSDPTTNHINGQHTTPC 284
Q A S +++ P + N P +P + S S PS T I+ H TP
Sbjct: 175 QMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPP 234
Query: 285 QLTESHRAPSHTEEHKPNLEVKVSSGP 311
Q + P++ KP + +GP
Sbjct: 235 QQQQQQPPPNYP---KPAMMHPGGAGP 258
>AR5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein
5B (ARID domain-containing protein 5B) (Mrf1-like)
(Modulator recognition factor protein 2) (Mrf-2)
(Developmentally and sexually retarded with transient
immune abnormalities protein)
Length = 1188
Score = 36.6 bits (83), Expect = 0.093
Identities = 39/171 (22%), Positives = 67/171 (38%), Gaps = 25/171 (14%)
Query: 143 RPIPPEVANNLFNESPENNH-----------QDTAEGRQEPETGKEGQEKEKVISQMREK 191
+P+PP N + EN + Q+ A+ ++E E + Q+ +V S+ RE+
Sbjct: 416 KPLPPIKPRKQENNTQENENKTKVSGNKRIKQEMAKNKKEKENTPKPQDTSEVSSEQREE 475
Query: 192 EPGIEKVNYSSTNVSSAVF--KQGQMTL---VPLDASQPQDACSTTQDKYPPLNPITTVG 246
E + + + V +G L P+ + P+ A T Q +G
Sbjct: 476 EETLSHKSAPEPLPAPEVKGKPEGHKDLGARAPVSRADPEKANETDQGSNSE-KEAEEMG 534
Query: 247 NQTLTDAPASPKI--------TPSFIQSPPSDPTTNHINGQHTTPCQLTES 289
++ L SP + TP + P + P+T + Q PC TES
Sbjct: 535 DKGLAPLLPSPPLPPEKDSAPTPGAGKQPLASPSTQMDSKQEAKPCCFTES 585
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 35.8 bits (81), Expect = 0.16
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 11/114 (9%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + + + + AH++ + +E + +Q
Sbjct: 438 LTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQP 497
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
F VG VW+R R + L R+ GP+ +L P A ++D
Sbjct: 498 VIPHPFRVGDTVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 540
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 35.8 bits (81), Expect = 0.16
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 11/114 (9%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + + + + AH++ + +E + +Q
Sbjct: 1053 LTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQP 1112
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
F VG VW+R R + L R+ GP+ +L P A ++D
Sbjct: 1113 VIPHPFRVGDTVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 1155
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 35.8 bits (81), Expect = 0.16
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 11/114 (9%)
Query: 1 MTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIEHILHTIKENLERSKQRMGTLANQK 60
+TP+E LYG PPP + + + + AH++ + +E + +Q
Sbjct: 262 LTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQP 321
Query: 61 RKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELD 114
F VG VW+R R + L R+ GP+ +L P A ++D
Sbjct: 322 VIPHPFRVGDTVWVR----------RHQTKNLEPRWKGPYTVLLTT-PTALKVD 364
>HA34_BRELC (Q99074) HAM34 protein
Length = 173
Score = 35.8 bits (81), Expect = 0.16
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 222 ASQPQDACSTTQDKYPPLNPITTVGNQTLTDAPASPKITPSFIQSPPSDPTTNHINGQHT 281
A+ P A +TT P + T QT T P + T +PP+D T T
Sbjct: 33 ATTPAAATTTTTTTTPAADAGTASTEQTTTAGPEAAGATNGTTTTPPADGTQT-----AT 87
Query: 282 TPCQLTESHRAPSHTEEHKPNLEVKVSSGPDSSDRILDS 320
P T TEE + E+ + G D+SD++ DS
Sbjct: 88 APLDATA-------TEESSASGEMTPTVGTDTSDQVSDS 119
>DAM2_MOUSE (Q80U19) Disheveled associated activator of
morphogenesis 2
Length = 1068
Score = 35.8 bits (81), Expect = 0.16
Identities = 36/151 (23%), Positives = 60/151 (38%), Gaps = 11/151 (7%)
Query: 130 LREYHGQDPDGHFRPIP----PEVANNLFNESPENNHQDTAEG--RQEPETGKEGQEKEK 183
L++ G DPD P+ + N L NE+ +D AE ++ E + KE+
Sbjct: 410 LQDERGVDPD--LAPLENFNVKNIVNMLINENEVKQWRDQAEKFRKEHMELMSRLERKER 467
Query: 184 VI-SQMREKEPGIEKVNYSSTNVS--SAVFKQGQMTLVPLDASQPQDACSTTQDKYPPLN 240
++ EKE + +N ++ S +Q + + L A + + PP
Sbjct: 468 ECETKTLEKEEMMRTLNKMKDKLARESQELRQARGQVAELVARHNESSTGPVSSPPPPGG 527
Query: 241 PITTVGNQTLTDAPASPKITPSFIQSPPSDP 271
P+T ++T D P P P PP P
Sbjct: 528 PLTLSSSRTTNDLPPPPPPLPFDSCPPPPAP 558
>NCA1_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa
isoform precursor (N-CAM 180) (NCAM-180)
Length = 1115
Score = 35.4 bits (80), Expect = 0.21
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 175 GKEGQEKEKVISQMREKEPGIE--KVNYSSTNVSSAVFKQGQMTLVPLDASQPQDACSTT 232
GK+ +E + S+ KEP +E + N + T + P D +T
Sbjct: 759 GKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPELPADTTATV 818
Query: 233 QDKYPPLNPITTVGNQTLTD-------APASPKITPSFIQSPPSD--PTTNHINGQHTTP 283
+D P + +TT + T+T+ +P S T + +PP+ P +N + TP
Sbjct: 819 EDMLPSVTTVTT-NSDTITETFATAQNSPTSETTTLTSSIAPPATTVPDSNSVPAGQATP 877
Query: 284 CQ-LTESHRAPSHTEEHKP--NLEVKVSSGPDSSD 315
+ +T S +P+ + P +L +S P +S+
Sbjct: 878 SKGVTASSSSPASAPKVAPLVDLSDTPTSAPSASN 912
>YK25_YEAST (P36138) Hypothetical 21.1 kDa protein in GAP1-NAP1
intergenic region
Length = 191
Score = 35.0 bits (79), Expect = 0.27
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 2/76 (2%)
Query: 137 DPDGHF--RPIPPEVANNLFNESPENNHQDTAEGRQEPETGKEGQEKEKVISQMREKEPG 194
DPDG + P V N + S ++ D EP TGK Q++++ Q +
Sbjct: 63 DPDGTTISSSLRPLVDRNSLHSSESDDEGDRRVAWDEPPTGKVRQQQQQQQQQQNDNASV 122
Query: 195 IEKVNYSSTNVSSAVF 210
I V++ S++V S+ F
Sbjct: 123 IPLVSFCSSSVKSSTF 138
>PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic
cytomatrix protein)
Length = 5085
Score = 35.0 bits (79), Expect = 0.27
Identities = 38/173 (21%), Positives = 65/173 (36%), Gaps = 8/173 (4%)
Query: 132 EYHGQDPDGHFRPIPP-EVANNLFNESPENNHQDTAEGRQEPETGKEGQEKEKVISQMRE 190
EY G F + P +++ N+ + +E QE T +K+KV+ + +
Sbjct: 143 EYKSSMMPGFFSDVNPLSAVSSVVNKFNPFDLISDSEASQEETT-----KKQKVVQKEQG 197
Query: 191 KEPGIEKVNYSSTNVSSAVFKQGQMTLVPLDASQPQDACSTTQDKYPPLNPITTVGNQTL 250
K G+ K + +QGQ+ V S P+ S +K P P T +Q
Sbjct: 198 KSEGMAKPPLQQPSPKPIPKQQGQVKEVIQQDSSPKSVSSQQAEKVKPQAPGTGKPSQQS 257
Query: 251 TDAPASPKITPS--FIQSPPSDPTTNHINGQHTTPCQLTESHRAPSHTEEHKP 301
+ + +P Q P S T G +P Q + ++P+ P
Sbjct: 258 PAQTPAQQASPGKPVAQQPGSAKATVQQPGPAKSPAQPAGTGKSPAQPPAKTP 310
>MINT_MOUSE (Q62504) Msx2-interacting protein (SMART/HDAC1 associated
repressor protein)
Length = 3644
Score = 35.0 bits (79), Expect = 0.27
Identities = 33/134 (24%), Positives = 55/134 (40%), Gaps = 21/134 (15%)
Query: 184 VISQMREKEPGIEKVNYSSTNVSSAVFKQGQMTLVPLDASQPQ----------DACSTTQ 233
VIS ++ P +EK +VS+ V + G + ++ + P + TT
Sbjct: 2873 VISSVKTDRPSLEKPEPIHLSVSTPVTQGGTVKVLTQGINTPPVLVHNQLVLTPSIVTTN 2932
Query: 234 DKYPPLNPITT-VGNQTLTDAPASPKITPSFIQSPPSDPT-----TNHINGQHTTPCQLT 287
K +P+T + + L A P +TP PP+ P+ NH+ +TP T
Sbjct: 2933 KKLA--DPVTLKIETKVLQPANLGPTLTP---HHPPALPSKLPAEVNHVPSGPSTPADRT 2987
Query: 288 ESHRAPSHTEEHKP 301
+H A + H P
Sbjct: 2988 IAHLATPKPDTHSP 3001
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,110,335
Number of Sequences: 164201
Number of extensions: 1968146
Number of successful extensions: 5423
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 5164
Number of HSP's gapped (non-prelim): 293
length of query: 339
length of database: 59,974,054
effective HSP length: 111
effective length of query: 228
effective length of database: 41,747,743
effective search space: 9518485404
effective search space used: 9518485404
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC136141.8