BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136140.1 - phase: 0
(115 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 63 1e-10
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 59 3e-09
Y880_METJA (Q58290) Hypothetical protein MJ0880 29 1.7
PS71_DROVI (O16811) Proteasome subunit alpha type 7-1 (EC 3.4.25... 29 1.7
NTPG_ENTHR (P43455) V-type sodium ATP synthase subunit G (EC 3.6... 29 1.7
SPEA_VIBPA (Q87JS8) Biosynthetic arginine decarboxylase (EC 4.1.... 29 2.2
SPEA_VIBCH (Q9KLD1) Biosynthetic arginine decarboxylase (EC 4.1.... 28 4.9
GATB_LEPIN (Q8F9D9) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 28 4.9
CIN4_YEAST (P39110) GTP-binding protein CIN4 27 6.4
SPEA_VIBVY (Q7MK24) Biosynthetic arginine decarboxylase (EC 4.1.... 27 8.3
SPEA_VIBVU (Q8DA54) Biosynthetic arginine decarboxylase (EC 4.1.... 27 8.3
SPEA_SHEON (Q8EFU5) Biosynthetic arginine decarboxylase (EC 4.1.... 27 8.3
PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC... 27 8.3
LUXC_PHOPO (P19841) Acyl-CoA reductase (EC 1.2.1.50) (Fragments) 27 8.3
GATB_BACHD (Q9Z9X0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 27 8.3
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 63.2 bits (152), Expect = 1e-10
Identities = 32/87 (36%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Query: 9 SLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSK 68
+L+ S TPYE W KKPY+ R+FG Y HI Q K DD S K + +G +
Sbjct: 628 ALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGK--FDDKSFKSIFVGY--EPN 683
Query: 69 AYRFFDRIIKKIVVSEDVAFDEQGMLS 95
++ +D + +K +V+ DV DE M++
Sbjct: 684 GFKLWDAVNEKFIVARDVVVDETNMVN 710
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 58.5 bits (140), Expect = 3e-09
Identities = 28/74 (37%), Positives = 42/74 (55%), Gaps = 1/74 (1%)
Query: 17 PYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDRI 76
P W+ K+ ++FG A+AH+P QR K LDD S C+ +G ++ YR +D +
Sbjct: 634 PERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTK-LDDKSIPCIFIGYGDEEFGYRLWDPV 692
Query: 77 IKKIVVSEDVAFDE 90
KK++ S DV F E
Sbjct: 693 KKKVIRSRDVVFRE 706
>Y880_METJA (Q58290) Hypothetical protein MJ0880
Length = 308
Score = 29.3 bits (64), Expect = 1.7
Identities = 13/45 (28%), Positives = 28/45 (61%)
Query: 37 IAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDRIIKKIV 81
I YA+I F +R+ +D+N+N+ ++ K ++ +I+KK++
Sbjct: 135 ILYANIFFERRQINIDNNNNEKIVFNREVIIKGFKKSLKILKKVI 179
>PS71_DROVI (O16811) Proteasome subunit alpha type 7-1 (EC
3.4.25.1) (Proteasome 28 kDa subunit 1)
Length = 247
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/57 (29%), Positives = 26/57 (44%)
Query: 37 IAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDRIIKKIVVSEDVAFDEQGM 93
+ YA + + CV+LGV +KS A DR ++KI V + V G+
Sbjct: 21 VEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKICVLDHVVMAFAGL 77
>NTPG_ENTHR (P43455) V-type sodium ATP synthase subunit G (EC
3.6.3.14) (Na(+)-translocating ATPase subunit G)
Length = 103
Score = 29.3 bits (64), Expect = 1.7
Identities = 22/89 (24%), Positives = 46/89 (50%), Gaps = 3/89 (3%)
Query: 25 KPYVMPFRIFGFIAYAHIPFSQRKKTLDDNS-NKCVLLGVSEK--SKAYRFFDRIIKKIV 81
K V PFR+FGF ++ +KT+D+ + N+ ++ ++E+ + +R ++
Sbjct: 11 KDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKNEYGVIYITEQCANLVPETIERYKGQLT 70
Query: 82 VSEDVAFDEQGMLSLILKEIQIRIYRGIG 110
+ + QG L + L+EIQ + + +G
Sbjct: 71 PAIILIPSHQGTLGIGLEEIQNSVEKAVG 99
>SPEA_VIBPA (Q87JS8) Biosynthetic arginine decarboxylase (EC
4.1.1.19) (ADC)
Length = 640
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHI 42
++S+ P AWS KPY+M F + G AY I
Sbjct: 526 IESTLPVPAWSKDKPYLMGFFLVG--AYQEI 554
>SPEA_VIBCH (Q9KLD1) Biosynthetic arginine decarboxylase (EC
4.1.1.19) (ADC)
Length = 640
Score = 27.7 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHI 42
++S+ P AW+ KPY+M F + G AY I
Sbjct: 526 IESTLPVPAWTSDKPYLMGFFLVG--AYQEI 554
>GATB_LEPIN (Q8F9D9) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT
subunit B)
Length = 486
Score = 27.7 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 1/68 (1%)
Query: 44 FSQRKKTLDDNSNKCVLLGVSEKSKAYRFF-DRIIKKIVVSEDVAFDEQGMLSLILKEIQ 102
F Q+ K D +NK V + E S YR+F D + IV+ ++ + L + E +
Sbjct: 248 FQQQTKLWDSVANKTVTMRTKEMSHDYRYFPDPDLPVIVLQKETVESVRSKLPELPNERK 307
Query: 103 IRIYRGIG 110
R +G
Sbjct: 308 NRFVEKLG 315
>CIN4_YEAST (P39110) GTP-binding protein CIN4
Length = 191
Score = 27.3 bits (59), Expect = 6.4
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 47 RKKTLDDNSNKCVLLGVSEKSKAYRFFDRIIKKIVVSEDVAFDEQG--MLSLILKEIQIR 104
RK+ L D +C++LG+ K+ ++++ K + D G + SL++K++ I
Sbjct: 8 RKQKLRDKEIRCLILGLDNSGKS-TIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTIS 66
Query: 105 IYRGIGGHQVI 115
++ IGG + +
Sbjct: 67 LW-DIGGQRTL 76
>SPEA_VIBVY (Q7MK24) Biosynthetic arginine decarboxylase (EC
4.1.1.19) (ADC)
Length = 640
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 3 IGLWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHI 42
I +V ++S+ P AW+ +PY+M F + G AY I
Sbjct: 517 IDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVG--AYQEI 554
>SPEA_VIBVU (Q8DA54) Biosynthetic arginine decarboxylase (EC
4.1.1.19) (ADC)
Length = 641
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 3 IGLWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHI 42
I +V ++S+ P AW+ +PY+M F + G AY I
Sbjct: 518 IDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVG--AYQEI 555
>SPEA_SHEON (Q8EFU5) Biosynthetic arginine decarboxylase (EC
4.1.1.19) (ADC)
Length = 637
Score = 26.9 bits (58), Expect = 8.3
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 2 VIGLWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNS 55
++ +V ++++ P AWS + PY++ F + G AY I D NS
Sbjct: 512 IVDQYVDGQGIETTLPVPAWSAESPYLIGFFMVG--AYQEILGDMHNLFGDTNS 563
>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC
2.7.7.8) (Polynucleotide phosphorylase) (PNPase)
Length = 693
Score = 26.9 bits (58), Expect = 8.3
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 13/68 (19%)
Query: 52 DDNSNKCVLLGVSEKSKAYRFFDRIIK------------KIVVSEDVAFDEQGMLSLILK 99
DD + + + E KAY FD++I+ +I++SE DE + S I+
Sbjct: 240 DDLEKRIIEISEQEIVKAYNIFDKVIRLDVLDKIKSKAIEIIISEYSGIDEFEITS-IIS 298
Query: 100 EIQIRIYR 107
I+ +I R
Sbjct: 299 NIERKIVR 306
>LUXC_PHOPO (P19841) Acyl-CoA reductase (EC 1.2.1.50) (Fragments)
Length = 382
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 72 FFDRIIKKIVVSEDV------AFDEQGMLSLILKEIQIRIYR 107
FFD +++++ + D+ FDE+ SLI KE Q Y+
Sbjct: 312 FFDELVEQLNLYMDILPKGDQTFDEKASFSLIEKECQFAKYK 353
>GATB_BACHD (Q9Z9X0) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT
subunit B)
Length = 476
Score = 26.9 bits (58), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (59%)
Query: 46 QRKKTLDDNSNKCVLLGVSEKSKAYRFF 73
Q + D+ +NK VL+ V E S YR+F
Sbjct: 244 QETRRYDEAANKTVLMRVKEGSDDYRYF 271
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,000,008
Number of Sequences: 164201
Number of extensions: 453183
Number of successful extensions: 1185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 59,974,054
effective HSP length: 91
effective length of query: 24
effective length of database: 45,031,763
effective search space: 1080762312
effective search space used: 1080762312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136140.1