BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135799.9 - phase: 0
(754 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase ... 34 1.6
POLG_ZYMVC (P18479) Genome polyprotein [Contains: P1 proteinase ... 33 2.1
POLG_ZYMVR (Q89330) Genome polyprotein [Contains: P1 proteinase ... 33 3.6
POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase ... 32 6.2
RYK_MOUSE (Q01887) Tyrosine-protein kinase RYK precursor (EC 2.7... 32 8.1
RYK_HUMAN (P34925) Tyrosine-protein kinase RYK precursor (EC 2.7... 32 8.1
K125_TOBAC (O23826) 125 kDa kinesin-related protein 32 8.1
>POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3083
Score = 33.9 bits (76), Expect = 1.6
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 363 KQRATSSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLV 422
K + + RLQ L+ + L DD + F N ++W QL
Sbjct: 1152 KLKIVFGTVGETVRLQGLEDIENLEDDKRLTIDFDINTNEAQSSTTFDVHFEDWWNRQLQ 1211
Query: 423 TGFTSTRHQPENR-----------PSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTST 471
T ++ + +NEIA SS F + G+V GS ST
Sbjct: 1212 QNRTVPHYRTTGKFLEFTRSTAAYVANEIASSSEGEFLVRGAV-----------GSGKST 1260
Query: 472 SFWKNTSTKGLVL 484
S + + KG VL
Sbjct: 1261 SLPAHLAKKGKVL 1273
>POLG_ZYMVC (P18479) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3080
Score = 33.5 bits (75), Expect = 2.1
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 363 KQRATSSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLV 422
K + + RLQ L+ + L DD + F N + ++W QL
Sbjct: 1149 KLKTVFGTVGETVRLQGLEDIESLEDDKRLTIDFDINTNEAHSSTTFDVHFDDWWNRQLQ 1208
Query: 423 TGFTSTRHQPENR-----------PSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTST 471
T ++ + +NEIA SS F + G V GS ST
Sbjct: 1209 QNRTVPHYRTTGKFLEFTRNTAAFVANEIASSSEGEFLVRGRV-----------GSGKST 1257
Query: 472 SFWKNTSTKGLVL 484
S + + KG VL
Sbjct: 1258 SLPAHLAKKGKVL 1270
>POLG_ZYMVR (Q89330) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3083
Score = 32.7 bits (73), Expect = 3.6
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 363 KQRATSSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLV 422
K + + RLQ L+ + L DD + F N ++W QL
Sbjct: 1152 KLKTVFGTVGETVRLQGLEDIENLEDDKKLTIDFDINTNEAQSSTTFDVHFDDWWNRQLQ 1211
Query: 423 TGFTSTRHQPENR-----------PSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTST 471
T ++ + +NEIA S+ F + G+V GS ST
Sbjct: 1212 QNRTVPHYRTTGKFLEFTRNTAAFVANEIASSNEGEFLVRGAV-----------GSGKST 1260
Query: 472 SFWKNTSTKGLVL 484
S + + KG VL
Sbjct: 1261 SLPAHLAKKGKVL 1273
>POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3068
Score = 32.0 bits (71), Expect = 6.2
Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 22/120 (18%)
Query: 376 RLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLVTGFTSTRHQPENR 435
R Q+L +D+ +V F + ++ + ++W Q+ GFT ++ E R
Sbjct: 1154 RHQSLDDFVSTMDEKNFVVDFELNDSVQRKNLTTEITFESWWDEQVARGFTIPHYRTEGR 1213
Query: 436 -----------PSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTSTSFWKNTSTKGLVL 484
+++I+ SS F I G+V GS ST + ST G VL
Sbjct: 1214 FMEFTRATAAKVASDISISSERDFLIRGAV-----------GSGKSTGLPHHLSTYGRVL 1262
>RYK_MOUSE (Q01887) Tyrosine-protein kinase RYK precursor (EC
2.7.1.112) (Kinase VIK) (NYK-R) (Met-related kinase)
Length = 594
Score = 31.6 bits (70), Expect = 8.1
Identities = 14/64 (21%), Positives = 34/64 (52%), Gaps = 6/64 (9%)
Query: 590 LTIRSLKEQGRLGRFFGGVMIRDQPPSNTIQKIIAVKDAMRDVENMTQKVNVSLLKIRSI 649
+T++ + ++G GR F G+++ ++ P+ Q + + V++ +V V+++ S
Sbjct: 317 ITLKDVLQEGTFGRIFHGILVDEKDPNKEKQTFV------KTVKDQASEVQVTMMLTESC 370
Query: 650 LLSG 653
L G
Sbjct: 371 KLRG 374
>RYK_HUMAN (P34925) Tyrosine-protein kinase RYK precursor (EC
2.7.1.112)
Length = 604
Score = 31.6 bits (70), Expect = 8.1
Identities = 14/64 (21%), Positives = 34/64 (52%), Gaps = 6/64 (9%)
Query: 590 LTIRSLKEQGRLGRFFGGVMIRDQPPSNTIQKIIAVKDAMRDVENMTQKVNVSLLKIRSI 649
+T++ + ++G GR F G++I ++ P+ Q + + V++ ++ V+++ S
Sbjct: 327 ITLKDVLQEGTFGRIFHGILIDEKDPNKEKQAFV------KTVKDQASEIQVTMMLTESC 380
Query: 650 LLSG 653
L G
Sbjct: 381 KLRG 384
>K125_TOBAC (O23826) 125 kDa kinesin-related protein
Length = 1006
Score = 31.6 bits (70), Expect = 8.1
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 22/190 (11%)
Query: 364 QRATSSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLVT 423
Q+ S+A + R Q+ L + + L S ++N + + Q VT
Sbjct: 817 QKCVSTAETALKRWQSTHELVNDMGNQHVLTMHSVVRNICDNN------------EQHVT 864
Query: 424 GFTSTRHQPENRPSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTSTSFWKNTSTKGLV 483
F STR E D + + G + G +TS T V
Sbjct: 865 DFDSTRESAEEDVKRNSEDIIKSIDSLSGEE------RGSISGVLDTTSAHSETLD---V 915
Query: 484 LSKNHVVADLSLTERAAKTSKQKSQVVEKTQATIDAATLKGIPSNIDLFKELIFPITLTA 543
L K+H + S+ + A +T +QK E T AT + +PS + + P+ +
Sbjct: 916 LKKDHCMQSTSIEQIALETFQQKYMDYEPTGAT-PIRSEPDVPSKVTIESLRAMPMEVLL 974
Query: 544 KNFEKLRHWE 553
+ F + +E
Sbjct: 975 EEFRENNSFE 984
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,554,444
Number of Sequences: 164201
Number of extensions: 3507564
Number of successful extensions: 9126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9126
Number of HSP's gapped (non-prelim): 7
length of query: 754
length of database: 59,974,054
effective HSP length: 118
effective length of query: 636
effective length of database: 40,598,336
effective search space: 25820541696
effective search space used: 25820541696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC135799.9