BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135798.2 + phase: 0
(261 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein) 470 e-132
RS3A_HELAN (P49198) 40S ribosomal protein S3a 454 e-128
RS3A_ARATH (Q42262) 40S ribosomal protein S3a 453 e-127
RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein) 443 e-124
RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase specific ... 434 e-121
RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a 352 7e-97
RS3A_HUMAN (P61247) 40S ribosomal protein S3a 341 9e-94
RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio... 340 2e-93
RS3A_MOUSE (P97351) 40S ribosomal protein S3a 340 2e-93
RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat... 338 6e-93
RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a) 338 8e-93
RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment) 336 4e-92
RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A) 332 6e-91
RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A) 330 2e-90
RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1) 323 3e-88
RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote... 317 2e-86
RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A) 314 1e-85
RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B) 313 2e-85
RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein) 297 2e-80
RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein) 297 2e-80
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)
Length = 259
Score = 470 bits (1209), Expect = e-132
Identities = 229/260 (88%), Positives = 252/260 (96%), Gaps = 1/260 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVF V+NVGKTLV+RTQGTKIASEGL
Sbjct: 1 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
+HRVFE+SLADLQGDED++FRKIRLRAED+QGKN+LTNFWGMDFTTDKLRSLVRKWQ+LI
Sbjct: 61 EHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EAHVDVKTTD+YTLRMFCIGFTK+R+NQ KRTCYAQSSQIRQIRRKMREIM+NQA SCDL
Sbjct: 121 EAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGT 241
KDLV+KFIPE IG+EIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+ED+GT
Sbjct: 181 KDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGT 240
Query: 242 KVERPADETMVEGTPEIVGA 261
K++RPA+E + E T E++GA
Sbjct: 241 KLDRPAEEAVAEPT-EVIGA 259
>RS3A_HELAN (P49198) 40S ribosomal protein S3a
Length = 259
Score = 454 bits (1169), Expect = e-128
Identities = 222/260 (85%), Positives = 247/260 (94%), Gaps = 1/260 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS+F +NVGKTLV+RTQGTKIASEGL
Sbjct: 1 AVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
KHRVFEVSLADLQ DED+++RKIRLRAEDVQGKN+LTNFWGMD TTDKLRSLV+KWQ+LI
Sbjct: 61 KHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EAHVDVKTTDN+TLRMFCIGFTK+R+NQVKRTCYAQSSQI+QIRRKMREIM+ QA +CDL
Sbjct: 121 EAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGT 241
K+LV+KFIPE IG+EIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 KELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGV 240
Query: 242 KVERPADETMVEGTPEIVGA 261
K++RPA+E E T E++GA
Sbjct: 241 KLDRPAEEAAPEAT-EVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a
Length = 261
Score = 453 bits (1165), Expect = e-127
Identities = 224/261 (85%), Positives = 241/261 (91%), Gaps = 1/261 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAP F +NVGKTLVSRTQGTKIASEGL
Sbjct: 1 AVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
KHRVFEVSLADLQ DEDNA+RKIRLRAEDVQG+N+LT FWGMDFTTDKLRSLV+KWQTLI
Sbjct: 61 KHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EAHVDVKTTD YTLRMFCI FTKRR+NQVKRTCYAQSSQIRQIRRKM EIM+ +A+SCDL
Sbjct: 121 EAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVG 240
K+LV KFIPE IG+EIEKAT IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVG
Sbjct: 181 KELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVG 240
Query: 241 TKVERPADETMVEGTPEIVGA 261
KV+RPADETMVE EI+GA
Sbjct: 241 VKVDRPADETMVEEPTEIIGA 261
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)
Length = 261
Score = 443 bits (1140), Expect = e-124
Identities = 218/254 (85%), Positives = 237/254 (92%), Gaps = 1/254 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKGKKG KKK DPFAKKDWYDIKAPSVF V+N+GKTLVSRTQGTKIASEGL
Sbjct: 1 AVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
KHRVFEVSLADLQ DED A+RKIRLRAEDVQGKN+LTNFWGM FTTDKLRSLV+KWQTLI
Sbjct: 61 KHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EAHVDVKTTD Y LR+FCIGFTKRR NQVKRTCYAQ+SQIRQIRRKM EIM NQA+SCDL
Sbjct: 121 EAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVG 240
K+LV KFIPE+IGKEIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G
Sbjct: 181 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIG 240
Query: 241 TKVERPADETMVEG 254
TK++RPA++ + G
Sbjct: 241 TKLDRPAEDEAMAG 254
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase specific
protein BIS289)
Length = 261
Score = 434 bits (1116), Expect = e-121
Identities = 221/262 (84%), Positives = 238/262 (90%), Gaps = 3/262 (1%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKG+KGGKKK DPFAKKDWYDIKAPS F +NVGKTLVSRTQGTKIASEGL
Sbjct: 1 AVGKNKRISKGRKGGKKKIVDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
KHRVFEVSLADL DED A+RKIRLRAEDVQG+N+LT FWGMDFTTDKLRSLV+KWQTLI
Sbjct: 61 KHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMI-NQATSCD 180
E+HVDVKTTDNYTLR+FCI FTKRR+NQVKRTCYAQSSQIRQIR KMREIMI +A+SCD
Sbjct: 121 ESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCD 180
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDV 239
LK+LV KFIPE IGK+IEKAT IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDV
Sbjct: 181 LKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDV 240
Query: 240 GTKVERPADETMVEGTPEIVGA 261
G KV+RPADE + E T EI+GA
Sbjct: 241 GVKVDRPADEVVEEPT-EIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a
Length = 247
Score = 352 bits (902), Expect = 7e-97
Identities = 181/243 (74%), Positives = 205/243 (83%), Gaps = 4/243 (1%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGK+KRISKGKKGGKKK DPF+KKDWYDIKAP + G+ RT GTKIAS+GL
Sbjct: 1 AVGKDKRISKGKKGGKKKIVDPFSKKDWYDIKAPPRSRRARSGRRC-HRTAGTKIASDGL 59
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
RVFEVSLADLQ DED AFRKI+LRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQ+LI
Sbjct: 60 NFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLI 119
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
+AHVDVKTTDNY +R+FCI FTK+R N R YAQSSQI IRRKMREIM+ +A +CDL
Sbjct: 120 QAHVDVKTTDNYQIRIFCIAFTKKRPNHT-RNFYAQSSQI-AIRRKMREIMVKEAQTCDL 177
Query: 182 KDLVRKFIPEMIGKEIEK-ATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
K+LV KFIPE+IGKEI++ + IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG
Sbjct: 178 KELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVG 237
Query: 241 TKV 243
K+
Sbjct: 238 AKI 240
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a
Length = 263
Score = 341 bits (875), Expect = 9e-94
Identities = 168/252 (66%), Positives = 207/252 (81%), Gaps = 9/252 (3%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+
Sbjct: 61 LKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTD Y LR+FC+GFTK+R+NQ+++T YAQ Q+RQIR+KM EIM + + D
Sbjct: 120 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS---- 236
LK++V K IP+ IGK+IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S
Sbjct: 180 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK 239
Query: 237 ---EDVGTKVER 245
++ G KVER
Sbjct: 240 ATGDETGAKVER 251
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation
effector protein) [Contains: 40S ribosomal protein S3b]
Length = 263
Score = 340 bits (872), Expect = 2e-93
Identities = 167/252 (66%), Positives = 206/252 (81%), Gaps = 9/252 (3%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+
Sbjct: 61 LKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTD Y LR+FC+GFTK+R+NQ+++T YAQ Q+RQIR+KM EIM + + D
Sbjct: 120 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD------ 234
LK++V K IP+ IGK+IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+
Sbjct: 180 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGK 239
Query: 235 -YSEDVGTKVER 245
++ G KVER
Sbjct: 240 TTGDETGAKVER 251
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a
Length = 263
Score = 340 bits (872), Expect = 2e-93
Identities = 167/252 (66%), Positives = 206/252 (81%), Gaps = 9/252 (3%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+
Sbjct: 61 LKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTD Y LR+FC+GFTK+R+NQ+++T YAQ Q+RQIR+KM EIM + + D
Sbjct: 120 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD------ 234
LK++V K IP+ IGK+IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+
Sbjct: 180 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGK 239
Query: 235 -YSEDVGTKVER 245
++ G KVER
Sbjct: 240 AAGDETGAKVER 251
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation
effector protein)
Length = 265
Score = 338 bits (868), Expect = 6e-93
Identities = 167/254 (65%), Positives = 206/254 (80%), Gaps = 11/254 (4%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKRLTKGGKKGAKKKIVDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+
Sbjct: 61 LKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTD Y LR+FC+GFTK+R+NQV++T YAQ Q+RQIR+KM EIM + + D
Sbjct: 120 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD------ 234
LK++V K IP+ +GK+IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+
Sbjct: 180 LKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGA 239
Query: 235 ---YSEDVGTKVER 245
+D G KVER
Sbjct: 240 AKASGDDTGAKVER 253
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)
Length = 263
Score = 338 bits (867), Expect = 8e-93
Identities = 166/252 (65%), Positives = 206/252 (80%), Gaps = 9/252 (3%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+
Sbjct: 61 LKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTM 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTD Y LR+FC+GFTK+R+NQ+++T YAQ Q+RQIR+KM EIM + + D
Sbjct: 120 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD------ 234
LK++V K IP+ IGK+IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+
Sbjct: 180 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGK 239
Query: 235 -YSEDVGTKVER 245
++ G KVER
Sbjct: 240 PSGDEAGAKVER 251
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)
Length = 260
Score = 336 bits (861), Expect = 4e-92
Identities = 165/249 (66%), Positives = 204/249 (81%), Gaps = 9/249 (3%)
Query: 5 KNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKH 63
KNKR++KG KKG KKK DPF+KKDWYD+KAP++F ++N+GKTLV+RTQGTKIAS+GLK
Sbjct: 1 KNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKG 60
Query: 64 RVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLIEA 123
RVFEVSLADLQ DE AFRK +L EDVQGKN LTNF GMD T DK+ S+V+KWQT+IEA
Sbjct: 61 RVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEA 119
Query: 124 HVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDLKD 183
HVDVKTTD Y LR+FC+GFTK+R+NQ+++T YAQ Q+RQIR+KM EIM + + DLK+
Sbjct: 120 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKE 179
Query: 184 LVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS------- 236
+V K IP+ IGK+IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S
Sbjct: 180 VVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATG 239
Query: 237 EDVGTKVER 245
++ G KVER
Sbjct: 240 DETGAKVER 248
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)
Length = 251
Score = 332 bits (851), Expect = 6e-91
Identities = 162/242 (66%), Positives = 205/242 (83%), Gaps = 1/242 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKR+SKGKKG KK+ DPF++K+WYDIKAP+ F+VKNVGKTLV+RT G K A++ L
Sbjct: 1 AVGKNKRLSKGKKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
K R+ EVSLADLQ DE++AFRK++LR ED+QGK+ LT+F G+ T+DKLRSLVRKWQT I
Sbjct: 61 KGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EA +KTTD Y R+F IGFT+RR+NQVK+T YAQSSQIR IR+KM +++ NQ +SC +
Sbjct: 121 EADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSM 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGT 241
++LV+K IPE+IG+EIE+AT SI+PLQNV +RKVKILKAPK D KL+E+HG+ S+DVGT
Sbjct: 181 RELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGT 239
Query: 242 KV 243
KV
Sbjct: 240 KV 241
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)
Length = 251
Score = 330 bits (847), Expect = 2e-90
Identities = 162/242 (66%), Positives = 203/242 (82%), Gaps = 1/242 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKR+SKGKKG KK+ DPF++KDWYDIKAP+ F+VKNVGKTLV+RT G K A++ L
Sbjct: 1 AVGKNKRLSKGKKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
K R+ EVSLADLQ DE+++FRK++LR ED+QGK+ LT+F G D T+DKLRSLVRKWQ+ I
Sbjct: 61 KGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EA+ +KTTD Y R+F IGFT RR NQVK+T YAQSSQIR I +KM +++ NQA C +
Sbjct: 121 EANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSM 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGT 241
K+LV+K IPE+IG+ IEKAT++IYPLQNVF+RKVKILKAPK D KL+E+HG+ S+DVG+
Sbjct: 181 KELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGS 239
Query: 242 KV 243
KV
Sbjct: 240 KV 241
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)
Length = 255
Score = 323 bits (827), Expect = 3e-88
Identities = 157/253 (62%), Positives = 205/253 (80%), Gaps = 1/253 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKR+SKGKKG KKK DPF +KDW+DIKAP+ F+ +NVGKTL++R+ G K A++GL
Sbjct: 1 AVGKNKRLSKGKKGLKKKVVDPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
K RVFEV LADLQG ED+++RKI+LR ++VQGKNLLTNF G+DFT+DKLRSLVRKWQ+L+
Sbjct: 61 KGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLV 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EA+V VKT+D+Y LR+F I FTKR+ NQ+K T YAQSS++R+ R+KM EI+ + ++C L
Sbjct: 121 EANVTVKTSDDYVLRVFAIAFTKRQPNQIKETTYAQSSKLREARKKMIEIIEREVSNCTL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVG 240
L K IPE+IG+EIEK+T +I+PLQNV IRKVK+LK PKFD G L+ +HG+ S E+ G
Sbjct: 181 AQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKG 240
Query: 241 TKVERPADETMVE 253
KV + ++E
Sbjct: 241 KKVSSGFKDVVLE 253
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein
KRP-A)
Length = 264
Score = 317 bits (811), Expect = 2e-86
Identities = 160/253 (63%), Positives = 201/253 (79%), Gaps = 10/253 (3%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNKR++KG KKG KKK DPF KK+WYD+KAPS+F V+ +GKTLV+R+QGTKIAS+
Sbjct: 1 AVGKNKRLTKGGKKGAKKKVVDPFTKKEWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDN 60
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK RVFEVSLADLQ DE FRK +L AE+VQG+N+LTNF GM T DKL S+V+KWQTL
Sbjct: 61 LKGRVFEVSLADLQNDEVT-FRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTL 119
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEA+VDVKTTD Y LR+F IGFTK+R+NQVK+TCYAQ +Q++ IR+KM EI+ + +S D
Sbjct: 120 IEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSND 179
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS---- 236
+K++V K IP+ IGK+IEK+ IYPL +V I KVK+LK PKFD+GKLME+HG+ S
Sbjct: 180 MKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTS 239
Query: 237 ----EDVGTKVER 245
+ G KV+R
Sbjct: 240 KGVTSEGGEKVDR 252
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)
Length = 254
Score = 314 bits (805), Expect = 1e-85
Identities = 157/251 (62%), Positives = 196/251 (77%), Gaps = 1/251 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKR+SKGKKG KK+ DPF +K+W+DIKAPS F+ +NVGKTLV+++ G K AS+ L
Sbjct: 1 AVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDAL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
K RV EV LADLQG ED++FRKI+LR ++VQGKNLLTNF GMDFTTDKLRS+VRKWQTLI
Sbjct: 61 KGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EA+V VKT+D+Y LR+F I FT++++NQVKR YAQSS IR IR+ + EI+ + L
Sbjct: 121 EANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVG 240
L K IPE+I KEIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G
Sbjct: 181 AQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKG 240
Query: 241 TKVERPADETM 251
KV DE +
Sbjct: 241 KKVTGFKDEVL 251
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)
Length = 254
Score = 313 bits (803), Expect = 2e-85
Identities = 156/251 (62%), Positives = 197/251 (78%), Gaps = 1/251 (0%)
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKR+S+GKKG KKK DPF +K+W+DIKAPS F+ +NVGKTLV+++ G K AS+ L
Sbjct: 1 AVGKNKRLSRGKKGLKKKVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKNASDAL 60
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
K RV EV LADLQG ED++FRK++LR ++VQGKNLLTNF GMDFTTDKLRS+VRKWQTLI
Sbjct: 61 KGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLI 120
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
EA+V VKT+D+Y LR+F I FT++++NQVKR YAQSS IR IR+ + EI+ + + L
Sbjct: 121 EANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTL 180
Query: 182 KDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVG 240
L K IPE+I KEIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G
Sbjct: 181 AQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKG 240
Query: 241 TKVERPADETM 251
KV DE +
Sbjct: 241 KKVSGFKDEVL 251
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 297 bits (761), Expect = 2e-80
Identities = 149/236 (63%), Positives = 183/236 (77%), Gaps = 3/236 (1%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNK +SKG KKG KKK DPF +KDWYD+KAP++F+ + GKTLV+RTQGTKIAS+G
Sbjct: 1 AVGKNKGVSKGGKKGSKKKVVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDG 60
Query: 61 LKHRVFEVSLADLQGDED--NAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQ 118
LK RVFEVSLADLQ + D +FRK +L AE V G+++LTNF GM TTDKLRS+V KWQ
Sbjct: 61 LKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQ 120
Query: 119 TLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATS 178
TLIE VDVKTTD + LR+FCIGFT + S ++TCYAQ SQI+ IR KM I+ + TS
Sbjct: 121 TLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITS 180
Query: 179 CDLKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
DLK +V K +P+ I K+IEKA +YPL +V+IRKVK+LK P+FDL LME+HGD
Sbjct: 181 TDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)
Length = 267
Score = 297 bits (760), Expect = 2e-80
Identities = 146/236 (61%), Positives = 184/236 (77%), Gaps = 3/236 (1%)
Query: 2 AVGKNKRISKG-KKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
AVGKNK +SKG KKGGKKK DPF++KDWYD+KAP++FQ + +GKTLV+RTQG +IAS+
Sbjct: 1 AVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDY 60
Query: 61 LKHRVFEVSLADLQGDED--NAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQ 118
LK RVFEVSLADLQ D D +FRK RL AEDVQ +N+L NF GMD TTDK RS+V+KWQ
Sbjct: 61 LKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQ 120
Query: 119 TLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATS 178
TLIEA V+ KT D Y LR+FCIGFT + ++TCYAQ SQ+R+IR +M +I+ N+ +
Sbjct: 121 TLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSG 180
Query: 179 CDLKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
DLK LV K + I K+IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct: 181 ADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 236
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,701,670
Number of Sequences: 164201
Number of extensions: 1110732
Number of successful extensions: 3130
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3033
Number of HSP's gapped (non-prelim): 45
length of query: 261
length of database: 59,974,054
effective HSP length: 108
effective length of query: 153
effective length of database: 42,240,346
effective search space: 6462772938
effective search space used: 6462772938
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC135798.2