BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135797.5 - phase: 0
(144 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SP41_YEAST (P38904) SPP41 protein 37 0.019
CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I) 36 0.025
CNG1_CANFA (Q28279) cGMP-gated cation channel alpha 1 (CNG chann... 35 0.073
HT31_ARATH (Q04996) Homeobox protein HAT3.1 33 0.16
MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC ... 33 0.21
H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm... 33 0.21
CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ... 33 0.21
ABPX_YEAST (Q08641) Actin-binding protein ABP140 33 0.21
YM8H_YEAST (Q03525) Hypothetical 16.2 kDa protein in PRP24-RRN9 ... 33 0.28
E2BD_YEAST (P12754) Translation initiation factor eIF-2B delta s... 33 0.28
YCF2_OENHO (Q9MEF2) Protein ycf2 32 0.47
VSM5_TRYBB (P26333) Variant surface glycoprotein MITAT 1.5 precu... 32 0.47
AMPR_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derive... 32 0.47
Y040_MYCPN (P75062) Hypothetical lipoprotein MG040 homolog precu... 32 0.62
MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment) 32 0.62
IF31_YEAST (Q05775) Possible eukaryotic translation initiation f... 32 0.62
IF2_STAAW (Q8NWZ1) Translation initiation factor IF-2 32 0.62
IF2_STAAN (P65134) Translation initiation factor IF-2 32 0.62
IF2_STAAM (P65133) Translation initiation factor IF-2 32 0.62
AMPR_MOUSE (P31955) Amphiregulin precursor (AR) (Schwannoma-deri... 32 0.62
>SP41_YEAST (P38904) SPP41 protein
Length = 1395
Score = 36.6 bits (83), Expect = 0.019
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 5 SQAPSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEK 64
++ PS+ +S S K EP K T D +P + K KK+P KKK +
Sbjct: 329 TEEPSQEQSIGPVSSRKAVEPPRKPTA-------DDIPLAMLQAFKPKKRPPQEKKKTKS 381
Query: 65 KNAKKGNKGN-STRGGNGKDKKQSRNVCGQSDLCSKSWD------------SQVIEGSSE 111
K +K + N S + KK+ + +S+ ++++ +QV+ S +
Sbjct: 382 KTSKAASTANKSPASESTSKKKKKKKTVKESNKSQEAYEDDEFSRILADMVNQVVNTSLK 441
Query: 112 FDSLDVCSQDSNCGSSFLKKSVTEVHYSVAEA 143
S +QD+ S S + Y+ +A
Sbjct: 442 ETSTHTATQDNKLESESDFTSPVQSQYTTEDA 473
Score = 28.5 bits (62), Expect = 5.2
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 19 RDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRG 78
+ ++ P+ KL+ K ++ + + K+K KS+ + KK+AK NK ++
Sbjct: 199 KHEHAAPNDKLSSKKSSKKKKKDKSKNRESSKDKSSKKSKSSSHSKKHAKDRNKEKQSKP 258
Query: 79 GNGKDKKQSRNV 90
N ++ N+
Sbjct: 259 TNNENTLDLSNI 270
>CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I)
Length = 667
Score = 36.2 bits (82), Expect = 0.025
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 51 NKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKD-KKQSRNVCGQSDLCSKSWDSQVIEGS 109
+KK K KK N+KK+AKK + G+ KD KK S+ G+ D SK D + +
Sbjct: 373 SKKGKKDSKKDNKKKDAKKDAESTDAESGDSKDAKKDSKK--GKKD--SKK-DDKKKDAK 427
Query: 110 SEFDSLDVCSQDSNCGSSFLKK 131
+ +S D S DS KK
Sbjct: 428 KDAESTDAESGDSKNAKKDSKK 449
Score = 33.1 bits (74), Expect = 0.21
Identities = 26/82 (31%), Positives = 41/82 (49%), Gaps = 5/82 (6%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGS 109
K+ K+ K KK++KK+AKK ++ G + KK S+ G+ D SK D++ +
Sbjct: 336 KDAKKGKKESKKDKKKDAKKDAASDAESGDSKDAKKDSKK--GKKD--SKK-DNKKKDAK 390
Query: 110 SEFDSLDVCSQDSNCGSSFLKK 131
+ +S D S DS KK
Sbjct: 391 KDAESTDAESGDSKDAKKDSKK 412
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K+ K+ K K+ KK AKK + G+ KD K+ +
Sbjct: 304 KDAKKDKKGATKDTKKGAKKDTESTDAESGDSKDAKKGK 342
Score = 28.5 bits (62), Expect = 5.2
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 12 KSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKKGN 71
K + KG +D + K K A + +KK K KKK+ KK+A +
Sbjct: 408 KDSKKGKKDSKKDDKKKDAKKDAESTDAESGDSKNAKKDSKKGKKDDKKKDAKKDAVSTD 467
Query: 72 KGNSTRGGNGKDKKQSR 88
+ + G K KK S+
Sbjct: 468 ADSESEGDAKKSKKDSK 484
>CNG1_CANFA (Q28279) cGMP-gated cation channel alpha 1 (CNG channel
alpha 1) (CNG-1) (CNG1) (Cyclic nucleotide gated channel
alpha 1) (Cyclic nucleotide gated channel,
photoreceptor) (Cyclic-nucleotide-gated cation channel
1) (Rod photoreceptor cGMP-gated
Length = 691
Score = 34.7 bits (78), Expect = 0.073
Identities = 13/42 (30%), Positives = 27/42 (63%)
Query: 45 VSHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQ 86
V+++ +++PK +KKK ++K +K G+K + + K KK+
Sbjct: 90 VNNSSNKEQEPKEKKKKKKEKKSKSGDKNENKKDSEKKKKKE 131
Score = 28.5 bits (62), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQ 86
KN+ + S KKK ++K +K NK GKDKK+
Sbjct: 117 KNENKKDSEKKKKKEKEKEKKNKEE-----KGKDKKE 148
>HT31_ARATH (Q04996) Homeobox protein HAT3.1
Length = 661
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 12 KSALKGSRDKNGEPHGK-LTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKKG 70
K+A G D E G + +K +++ D HT +KK + K+ ++K +
Sbjct: 486 KTARMGKEDSESEDEGDTVPLKQSSNAED-------HT--SKKLIRKSKRADKKDTLEMP 536
Query: 71 NKGNSTRGGNGKDKKQSRNVCGQSD 95
+G GG+G+ +K S + C Q+D
Sbjct: 537 QEGPGENGGSGEIEKSSSSACKQTD 561
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)
[Contains: Micronuclear linker histone-alpha;
Micronuclear linker histone-beta; Micronuclear linker
histone-delta; Micronuclear linker histone-gamma]
Length = 633
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 46 SHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKS 100
S + KNKK S+ +K+ +K + + + KD+K S + +S SKS
Sbjct: 276 SSSSKNKKSSSSKGRKSSSSRGRKASSSKNRKSSKSKDRKSSSSKGRKSSSSSKS 330
Score = 31.6 bits (70), Expect = 0.62
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 46 SHTVKNKKQPKSRKKK---NEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKS 100
S T + + + + R++K NEK N+K +KG N + K +S++ SKS
Sbjct: 468 SSTTQTRTRGRQREQKDMVNEKSNSKSSSKGKKNSKSNTRSKSKSKSASKSRKNASKS 525
Score = 28.9 bits (63), Expect = 4.0
Identities = 19/55 (34%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQ 104
KN+K KS K+ K ++ KG K +S+ N + SR S KS SQ
Sbjct: 304 KNRKSSKS---KDRKSSSSKGRKSSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQ 355
Score = 27.7 bits (60), Expect = 8.9
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 47 HTVKNKKQPKSRKK-----KNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSW 101
++ NK+ S K KN+K ++ K K +S++G + + ++ SKS
Sbjct: 253 NSTSNKRNSSSSSKRSSSSKNKKSSSSKNKKSSSSKGRKSSSSRGRKASSSKNRKSSKSK 312
Query: 102 DSQVIEGSSEFDSLDVCSQDSNCGSSFLKKS 132
D + S S SS +KS
Sbjct: 313 DRKSSSSKGRKSSSSSKSNKRKASSSRGRKS 343
>H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*)
(Sperm-specific linker histone H1-like protein)
[Contains: Sperm-specific protein PHI-3 (Protamine-like
protein PHI-3) (PL-IV)]
Length = 202
Score = 33.1 bits (74), Expect = 0.21
Identities = 24/83 (28%), Positives = 33/83 (38%)
Query: 6 QAPSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKK 65
+AP+ K A K K K A + T K+PKS KKK KK
Sbjct: 119 KAPASPKKAKKAKSPKKKSSKNKSNNAKAKKSPRKKAAVKKSTKSKAKKPKSPKKKAAKK 178
Query: 66 NAKKGNKGNSTRGGNGKDKKQSR 88
A+K K + + K K+S+
Sbjct: 179 TARKSPKKKARKSPKKKAAKKSK 201
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6
(CHD-6)
Length = 2713
Score = 33.1 bits (74), Expect = 0.21
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 12/93 (12%)
Query: 8 PSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNA 67
P + + A KGS+D+ +P K K +P + K K+ K K+K+ K A
Sbjct: 99 PGDQEGAAKGSKDREPKPKRKREPK------EPKEPRKAEEPKKAKEHKEPKQKDGAKKA 152
Query: 68 KKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKS 100
+K + + T K+ K+ R+ C S +KS
Sbjct: 153 RKPREASGT-----KEAKEKRS-CTDSAARTKS 179
>ABPX_YEAST (Q08641) Actin-binding protein ABP140
Length = 627
Score = 33.1 bits (74), Expect = 0.21
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 7/69 (10%)
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSL 115
K++KKKN+KKN KK N GN N D ++ G++D + S E + L
Sbjct: 214 KNKKKKNKKKNKKKRN-GNVNTNANVDDSTKT----GENDDTTGDTTSSTTSAIQEVNDL 268
Query: 116 DVCSQDSNC 124
+V D +C
Sbjct: 269 EVV--DDSC 275
>YM8H_YEAST (Q03525) Hypothetical 16.2 kDa protein in PRP24-RRN9
intergenic region
Length = 142
Score = 32.7 bits (73), Expect = 0.28
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 51 NKKQPKSRKKKNEKKNAKKGNKG--NSTRGGNGKDKKQSRN 89
N + K +KKK KK +KKG K +S G K KK ++
Sbjct: 84 NDSESKKKKKKKSKKESKKGKKSKHSSDEGDKSKHKKSKKS 124
>E2BD_YEAST (P12754) Translation initiation factor eIF-2B delta
subunit (eIF-2B GDP-GTP exchange factor) (Guanine
nucleotide exchange factor subunit GCD2) (GCD complex
subunit GCD2)
Length = 651
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 53 KQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEF 112
K+ K KKK +N KGNK +G G +S++ + D SK+ +++G E
Sbjct: 556 KERKFEKKKLAMENKPKGNKIGGKKGSEG----ESKDASNEEDSNSKN----ILDGWQEL 607
Query: 113 DSLDVCS-QDSNCGSSFLKKSVTE 135
SL++ + ++KK +TE
Sbjct: 608 PSLNIVNILYDLTPPEYIKKVITE 631
>YCF2_OENHO (Q9MEF2) Protein ycf2
Length = 2280
Score = 32.0 bits (71), Expect = 0.47
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQS 87
K KK K ++KK EK+ KK K + K+KKQS
Sbjct: 1157 KEKKPEKRKEKKPEKRKEKKPEKRKEKKPEKRKEKKQS 1194
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (50%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK K +KKK EK+ KK K + K+KK +
Sbjct: 1125 KEKKSEKRKKKKPEKRKEKKPEKRKEKKPEKRKEKKPEK 1163
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK K ++KK EK+ KK K + K+KK +
Sbjct: 1133 KKKKPEKRKEKKPEKRKEKKPEKRKEKKPEKRKEKKPEK 1171
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK K ++KK EK+ KK K + K+KK +
Sbjct: 1141 KEKKPEKRKEKKPEKRKEKKPEKRKEKKPEKRKEKKPEK 1179
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK K ++KK EK+ KK K + K+KK +
Sbjct: 1149 KEKKPEKRKEKKPEKRKEKKPEKRKEKKPEKRKEKKPEK 1187
>VSM5_TRYBB (P26333) Variant surface glycoprotein MITAT 1.5
precursor (VSG 118)
Length = 474
Score = 32.0 bits (71), Expect = 0.47
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 3/68 (4%)
Query: 47 HTVKNKKQPKSRK-KKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCS--KSWDS 103
H + K + K + +KN+ K NK T+ G K+ + N GQS +C K D
Sbjct: 380 HKAEGKCEAKDGEGQKNQATGEKDANKNRCTQHGTNKEACEKENTPGQSAVCGFRKGKDG 439
Query: 104 QVIEGSSE 111
+ E E
Sbjct: 440 ETDEPDKE 447
>AMPR_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derived
growth factor) (SDGF)
Length = 243
Score = 32.0 bits (71), Expect = 0.47
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 35 ADVYDPVPTLVSHTVKNKKQ------PKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
++ YD P + + V + + PK K + EK + K K +GG G+ R
Sbjct: 74 SEEYDNEPQISGYIVDDSVRVEQVIKPKENKTEGEKSSEKPKRKKKGGKGGKGR-----R 128
Query: 89 NVCGQSDLCSKSWDSQVIEGSSEF-DSLDV----CSQD---SNCGSSFLK 130
N + + C+ + + I G + ++L+V C QD CG +K
Sbjct: 129 NRKKKKNPCAAKFQNFCIHGECRYIENLEVVTCHCHQDYFGERCGEKTMK 178
>Y040_MYCPN (P75062) Hypothetical lipoprotein MG040 homolog
precursor (D09_orf657)
Length = 657
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
Query: 16 KGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKK-GNKGN 74
KG NG+ G+ K D+ L++ T N K S+K+ ++ + KK G+
Sbjct: 544 KGKTQSNGQDSGQQNGKETNDIISKYSKLLTMTTMNNKVMSSKKQSSDDNSFKKTSENGD 603
Query: 75 STRGGNGKDKKQS 87
G+ KK+S
Sbjct: 604 WVIKGDELTKKKS 616
>MYS3_HYDAT (P39922) Myosin heavy chain, clone 203 (Fragment)
Length = 539
Score = 31.6 bits (70), Expect = 0.62
Identities = 22/89 (24%), Positives = 42/89 (46%), Gaps = 4/89 (4%)
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSL 115
K K K EK+ + N+ N T+ + KKQ N SD S+ + Q+ E +S+ +
Sbjct: 414 KKAKAKLEKEKSALNNELNETKNSLDQIKKQKTN----SDKNSRMLEEQINELNSKLAQV 469
Query: 116 DVCSQDSNCGSSFLKKSVTEVHYSVAEAQ 144
D S +S + + ++ ++E++
Sbjct: 470 DELHSQSESKNSKVNSELLALNSQLSESE 498
>IF31_YEAST (Q05775) Possible eukaryotic translation initiation
factor 3 30 kDa subunit (eIF-3 30 kDa) (eIF3j)
Length = 265
Score = 31.6 bits (70), Expect = 0.62
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 14 ALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNK-KQPKSRKKKNEKKNAKKGNK 72
A+ GS G L W A++ D P + S + + K+P + KK + K KKG +
Sbjct: 7 AINGSM---GNDDAVLMDSWDAEIGDDEPVMQSWDAEEEEKKPAPKPKKEQPKKVKKGKE 63
Query: 73 GNSTR 77
++ R
Sbjct: 64 SSADR 68
>IF2_STAAW (Q8NWZ1) Translation initiation factor IF-2
Length = 705
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 46 SHTVKNKKQPKSRKKKNEKKNAKKGNKGN-STRGGNGKDKKQSRN 89
+H N + ++K+ KKN ++ NKGN + N +KK ++N
Sbjct: 65 NHQKSNNQNQNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKN 109
Score = 27.7 bits (60), Expect = 8.9
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 50 KNKKQPKSRKKKNEKKNA--KKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIE 107
+NK Q K KK ++ N K K N N K+ K ++ SK + I
Sbjct: 74 QNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKNNKPQNQPAAPKEIPSKVTYQEGIT 133
Query: 108 GSSEFDSLDVCSQD 121
D L+V S +
Sbjct: 134 VGEFADKLNVESSE 147
>IF2_STAAN (P65134) Translation initiation factor IF-2
Length = 705
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 46 SHTVKNKKQPKSRKKKNEKKNAKKGNKGN-STRGGNGKDKKQSRN 89
+H N + ++K+ KKN ++ NKGN + N +KK ++N
Sbjct: 65 NHQKSNNQNQNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKN 109
Score = 27.7 bits (60), Expect = 8.9
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 50 KNKKQPKSRKKKNEKKNA--KKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIE 107
+NK Q K KK ++ N K K N N K+ K ++ SK + I
Sbjct: 74 QNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKNNKPQNQPAAPKEIPSKVTYQEGIT 133
Query: 108 GSSEFDSLDVCSQD 121
D L+V S +
Sbjct: 134 VGEFADKLNVESSE 147
>IF2_STAAM (P65133) Translation initiation factor IF-2
Length = 705
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 46 SHTVKNKKQPKSRKKKNEKKNAKKGNKGN-STRGGNGKDKKQSRN 89
+H N + ++K+ KKN ++ NKGN + N +KK ++N
Sbjct: 65 NHQKSNNQNQNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKN 109
Score = 27.7 bits (60), Expect = 8.9
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 50 KNKKQPKSRKKKNEKKNA--KKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIE 107
+NK Q K KK ++ N K K N N K+ K ++ SK + I
Sbjct: 74 QNKGQQKDNKKNQQQNNKGNKGNKKNNRNNKKNNKNNKPQNQPAAPKEIPSKVTYQEGIT 133
Query: 108 GSSEFDSLDVCSQD 121
D L+V S +
Sbjct: 134 VGEFADKLNVESSE 147
>AMPR_MOUSE (P31955) Amphiregulin precursor (AR) (Schwannoma-derived
growth factor) (SDGF)
Length = 248
Score = 31.6 bits (70), Expect = 0.62
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 35 ADVYDPVPTLVSHTVKNKKQ------PKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
++ YD P + + + + + PK K + EK K K + G G+ K+ +
Sbjct: 77 SEEYDNEPQISGYIIDDSVRVEQVIKPKKNKTEGEKSTEKPKRKKKGGKNGKGRRNKKKK 136
Query: 89 NVCGQSDLCSKSWDSQVIEGSSEF-DSLDV----CSQD---SNCGSSFLK 130
N C+ + + I G + ++L+V C QD CG +K
Sbjct: 137 NP------CTAKFQNFCIHGECRYIENLEVVTCNCHQDYFGERCGEKSMK 180
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.305 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,027,284
Number of Sequences: 164201
Number of extensions: 759095
Number of successful extensions: 3348
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2699
Number of HSP's gapped (non-prelim): 486
length of query: 144
length of database: 59,974,054
effective HSP length: 99
effective length of query: 45
effective length of database: 43,718,155
effective search space: 1967316975
effective search space used: 1967316975
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC135797.5