
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135796.9 - phase: 0 /pseudo
(911 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.... 94 1e-18
RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.... 94 1e-18
RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa poly... 92 6e-18
RPC2_SCHPO (Q10233) Putative DNA-directed RNA polymerase III 130... 86 3e-16
RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa poly... 75 6e-13
RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.... 54 2e-06
RPOB_SULAC (P11513) DNA-directed RNA polymerase subunit B (EC 2.... 46 4e-04
RPB2_METVA (P41558) DNA-directed RNA polymerase subunit B'' (EC ... 45 0.001
RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa polyp... 38 0.14
RPB2_CAEEL (Q10578) DNA-directed RNA polymerase II second larges... 37 0.18
RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa polyp... 37 0.24
RPB2_METJA (Q58444) DNA-directed RNA polymerase subunit B'' (EC ... 33 2.6
RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.... 32 5.9
RPB2_HALN1 (P15352) DNA-directed RNA polymerase subunit B'' (EC ... 32 7.7
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6
kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
2) (RPC2)
Length = 1133
Score = 94.4 bits (233), Expect = 1e-18
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
+++ KAMG+E DQE+VQ+IG + PS+EEC K IFTQ QAL Y+ +K RQ
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296
Query: 59 ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
A +L T L +VPV +NFR KCIY AVM+RR++ A + +DD+
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355
Query: 107 F 107
+
Sbjct: 356 Y 356
Score = 41.6 bits (96), Expect = 0.010
Identities = 18/35 (51%), Positives = 26/35 (73%)
Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
+ +D IT G+ +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6
kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
2) (RPC2)
Length = 1133
Score = 94.4 bits (233), Expect = 1e-18
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 15/121 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAERQ-- 58
+++ KAMG+E DQE+VQ+IG + PS+EEC K IFTQ QAL Y+ +K RQ
Sbjct: 237 VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRM 296
Query: 59 ------------AFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
A +L T L +VPV +NFR KCIY AVM+RR++ A + +DD+
Sbjct: 297 WGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRD 355
Query: 107 F 107
+
Sbjct: 356 Y 356
Score = 41.6 bits (96), Expect = 0.010
Identities = 18/35 (51%), Positives = 26/35 (73%)
Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
+ +D IT G+ +STGN+ +KRFKM + GVTQV+
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVL 440
>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa
polypeptide (EC 2.7.7.6) (C128) (RNA polymerase III
subunit 2)
Length = 1149
Score = 92.0 bits (227), Expect = 6e-18
Identities = 69/232 (29%), Positives = 121/232 (51%), Gaps = 41/232 (17%)
Query: 2 VVMKAMGMEHDQEVVQLI-GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE---R 57
+V+KA G+ D E++QL+ G D Y + ++EE +K+ I+TQ QAL+Y+ +K + R
Sbjct: 255 IVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRR 314
Query: 58 QAFNILRE-------TFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF--K 108
Q IL+E T +A++ V +FR K +Y+A+M RR++ A+ N +DD+ +
Sbjct: 315 QKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGN 374
Query: 109 KIIGLCWKQTIGVIWPSYLSSI*GSF*VDDN*N*VCGGQIVG*ARQS*EV*LSYFQPDLS 168
K + L Q I +++ F + + +++ ++ E + LS
Sbjct: 375 KRLELA-GQLISLLFEDLFKKFNNDFKLSID-------KVLKKPNRAME-----YDALLS 421
Query: 169 ISGFQFT*FLWMCL*QLINRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
I+ ++ + IT GL R +STGN+ +KRFKM ++GVT V+
Sbjct: 422 IN---------------VHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVL 458
>RPC2_SCHPO (Q10233) Putative DNA-directed RNA polymerase III 130
kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
2)
Length = 1165
Score = 86.3 bits (212), Expect = 3e-16
Identities = 42/121 (34%), Positives = 72/121 (58%), Gaps = 14/121 (11%)
Query: 1 MVVMKAMGMEHDQEVVQLI-GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE--- 56
+VV+KAMG++ DQE+ +L+ G + Y L PSIEEC K+ I+T QAL+Y+ ++ +
Sbjct: 262 VVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNR 321
Query: 57 ----------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKS 106
+A +L LA++ V FRPK +Y+ +M RR++ A+++ +DD+
Sbjct: 322 RAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRD 381
Query: 107 F 107
+
Sbjct: 382 Y 382
Score = 43.9 bits (102), Expect = 0.002
Identities = 19/35 (54%), Positives = 27/35 (76%)
Query: 186 INRDCITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
++ D IT G+ R LSTGN+ +KRFKM ++GVT V+
Sbjct: 435 VHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVL 469
>RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2)
Length = 1135
Score = 75.5 bits (184), Expect = 6e-13
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKA----- 55
+V+ KA+G+ DQE+ LIG D + S+ + + +FTQ +AL+Y+ SK
Sbjct: 243 VVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRF 302
Query: 56 --------ERQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDKSF 107
+A +L T LA+VPV +N + K IYV++M+RR+M A L+K DD+ +
Sbjct: 303 QSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDY 362
Score = 42.7 bits (99), Expect = 0.004
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 191 ITPGLERTLSTGNFDVKRFKMHKSGVTQVI 220
IT GLE +S+GN+ +KRFKM ++GVTQV+
Sbjct: 417 ITAGLESAISSGNWTIKRFKMERAGVTQVL 446
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC
2.7.7.6)
Length = 1122
Score = 53.9 bits (128), Expect = 2e-06
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 3 VMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKA------- 55
VM+A+G+ D+E+V+ + DPR +L ++E+ + + TQ +ALDY+ +
Sbjct: 230 VMRALGLLSDREIVEAVSDDPRIQHVLFDNLEDAS--DVTTQEEALDYIGKLSLPGQPKE 287
Query: 56 --ERQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
R+A NI+ L ++ V + + K Y+ +M R+++ L DDK
Sbjct: 288 YRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDK 339
>RPOB_SULAC (P11513) DNA-directed RNA polymerase subunit B (EC
2.7.7.6)
Length = 1126
Score = 46.2 bits (108), Expect = 4e-04
Identities = 26/113 (23%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 2 VVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE----- 56
++M+A+G D+++V + DP+ L+PS+E+ + I + +ALD++ ++
Sbjct: 223 IIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQAS--SITSAEEALDFIGNRVAIGQKR 280
Query: 57 ----RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
++A ++ + FL ++ + + K Y+A + +I++ L + DDK
Sbjct: 281 ENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDK 333
>RPB2_METVA (P41558) DNA-directed RNA polymerase subunit B'' (EC
2.7.7.6)
Length = 499
Score = 44.7 bits (104), Expect = 0.001
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEEC-TKIGIFTQAQALDYVDSKAE--- 56
+++M+A+G E D+E+++LI +P L+ +++E + GI T AL+++ +
Sbjct: 222 VILMRALGAESDREIMELISDEPTVVMQLVANLQEAREEHGINTTEDALEHIGKRVAPGQ 281
Query: 57 ------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
++A IL L ++ + KC Y+ M + ++ L DDK
Sbjct: 282 PKEYKLKRAETILCNYLLPHMGIESEKLGAKCKYLGRMAKNSIELYLGSRVEDDK 336
>RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2)
Length = 1176
Score = 37.7 bits (86), Expect = 0.14
Identities = 28/118 (23%), Positives = 58/118 (48%), Gaps = 15/118 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLI---GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAER 57
M+V +A+G D+++++ I DP ++ PS++E + Q AL+++ ++ R
Sbjct: 271 MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGAR 328
Query: 58 ----------QAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
A IL++ L +V V + K ++ M+ R++ A L + +DD+
Sbjct: 329 PGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
>RPB2_CAEEL (Q10578) DNA-directed RNA polymerase II second largest
subunit (EC 2.7.7.6) (RNA polymerase I subunit 2)
Length = 1193
Score = 37.4 bits (85), Expect = 0.18
Identities = 28/118 (23%), Positives = 57/118 (47%), Gaps = 15/118 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLI---GRDPRYSFLLMPSIEECTKIGIFTQAQALDYVDSKAE- 56
M+V +A+G D++++ I DP ++ PS++E I Q AL+++ ++
Sbjct: 276 MIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAK 333
Query: 57 ---------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
+ A IL++ L +V V + K ++ M+ R++ A L + +DD+
Sbjct: 334 PGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDR 391
>RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2)
Length = 1210
Score = 37.0 bits (84), Expect = 0.24
Identities = 28/118 (23%), Positives = 59/118 (49%), Gaps = 15/118 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQ--ALDYVDSKAE-- 56
++V +A+G+ D+++++ I DP F ++ ++ C + Q + ALDY+ +
Sbjct: 269 VIVFRALGVVPDRDILEHICYDPN-DFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTT 327
Query: 57 --------RQAFNILRETFLANV-PVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
R A +IL++ L ++ + G+ R K ++ MI R++ L + DD+
Sbjct: 328 GVTREKRLRYAHDILQKELLPHITTMEGFETR-KAFFLGYMIHRMLLCALERREPDDR 384
>RPB2_METJA (Q58444) DNA-directed RNA polymerase subunit B'' (EC
2.7.7.6)
Length = 498
Score = 33.5 bits (75), Expect = 2.6
Identities = 25/115 (21%), Positives = 56/115 (47%), Gaps = 11/115 (9%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEEC-TKIGIFTQAQALDYVDSKAE--- 56
+++MKA+G E D+++++ I D R+ ++ +I+E + I + AL+++ +
Sbjct: 223 VILMKALGAETDKDIIESID-DERFFMEIVLNIQEIREEHNINSPEDALEFIGKRVAPGQ 281
Query: 57 ------RQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
++A +L L ++ V +F K ++ +M R ++ DDK
Sbjct: 282 AKDYRLKRAETVLCNYLLPHLGVTKEDFPKKIRFLGIMARNALELYFGYRGEDDK 336
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC
2.7.7.6)
Length = 1195
Score = 32.3 bits (72), Expect = 5.9
Identities = 26/120 (21%), Positives = 53/120 (43%), Gaps = 15/120 (12%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTK------IGIFTQAQALDYVDSK 54
+++MKA+G+E D +V I P ++ +IE+ G+ T A+ Y++ +
Sbjct: 262 VILMKALGLERDVDVHDAIASVPEMEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEKR 321
Query: 55 ---------AERQAFNILRETFLANVPVHGYNFRPKCIYVAVMIRRIMDAILNKDAMDDK 105
+++ +L + L ++ + K IY+ M R +++ L DDK
Sbjct: 322 FAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDK 381
>RPB2_HALN1 (P15352) DNA-directed RNA polymerase subunit B'' (EC
2.7.7.6)
Length = 523
Score = 32.0 bits (71), Expect = 7.7
Identities = 13/49 (26%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
Query: 1 MVVMKAMGMEHDQEVVQLIGRDPRYSFLLMPSIEECTKIGIFTQAQALD 49
+ +++A+G+E D+E+V + DP ++ ++EE + TQ +A++
Sbjct: 231 VTLVRALGLESDEEIVHRVSEDPEIVKFMLENLEEA---DVQTQEEAIE 276
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.365 0.160 0.668
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,640,680
Number of Sequences: 164201
Number of extensions: 3178001
Number of successful extensions: 14034
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14009
Number of HSP's gapped (non-prelim): 22
length of query: 911
length of database: 59,974,054
effective HSP length: 119
effective length of query: 792
effective length of database: 40,434,135
effective search space: 32023834920
effective search space used: 32023834920
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 71 (32.0 bits)
Medicago: description of AC135796.9