BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.5 + phase: 0
(471 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TFH2_HUMAN (Q13888) TFIIH basal transcription factor complex p44... 290 6e-78
TFH2_MOUSE (Q9JIB4) TFIIH basal transcription factor complex p44... 287 5e-77
TF47_SCHPO (O74995) TFIIH basal transcription factor complex p47... 281 3e-75
SSL1_YEAST (Q04673) Suppressor of stem-loop protein 1 251 3e-66
TFH2_CAEEL (P34567) Probable TFIIH basal transcription factor co... 234 3e-61
PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit... 39 0.022
PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit... 36 0.19
PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit... 36 0.19
PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit... 36 0.19
ASTE_VIBVY (Q7MLE8) Succinylglutamate desuccinylase (EC 3.1.-.-) 35 0.42
ASTE_VIBVU (Q8D926) Succinylglutamate desuccinylase (EC 3.1.-.-) 35 0.42
Y737_PROMM (Q7V7K6) Hypothetical RNA methyltransferase PMT0737 (... 33 1.2
SIS2_YEAST (P36024) SIS2 protein (Halotolerance protein HAL3) 33 1.2
SET_RAT (Q63945) SET protein (Phosphatase 2A inhibitor I2PP2A) (... 33 1.2
SET_MOUSE (Q9EQU5) SET protein (Phosphatase 2A inhibitor I2PP2A)... 33 1.2
DCD1_HUMAN (P59894) Doublecortin domain-containing protein 1 33 1.6
RPNA_SCHPO (O94444) 26S proteasome regulatory subunit rpn10 32 3.5
DPOA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2... 32 3.5
YM09_PARTE (P15610) Hypothetical 22.9 kDa protein (ORF9) 32 4.6
PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2.... 31 6.0
>TFH2_HUMAN (Q13888) TFIIH basal transcription factor complex p44
subunit (Basic transcription factor 2 44 kDa subunit)
(BTF2-p44) (General transcription factor IIH polypeptide
2)
Length = 395
Score = 290 bits (742), Expect = 6e-78
Identities = 153/369 (41%), Positives = 222/369 (59%), Gaps = 31/369 (8%)
Query: 16 DDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAA 75
D+E E + WE Y +R+WE L+EDESG L+ + A+ +R
Sbjct: 2 DEEPERT----KRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------ 49
Query: 76 TARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTT 135
+++ G++R+LY+VVD S+ ++D +P+R+ K +E F+ E+FDQNP+S +G++ T
Sbjct: 50 HGQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVT 109
Query: 136 KDGVANCLTDLGGSPESHIKALMGKLE--CSGDASLQNALELVHSNLNQIPSYGHREVLI 193
K A LT+L G+P HI +L ++ C G+ SL N+L + L +P + REVLI
Sbjct: 110 KSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLI 169
Query: 194 LYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFK 253
++S+L+TCDP ++ + I+ K +KIR SVIGL+AE+ +C L +ETGGTY V LDESH+K
Sbjct: 170 IFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYK 229
Query: 254 ELILEHSPPPPAIAEYATANLIKMGFPQRA------AEGSVAICTCH-----EEAKTGGG 302
EL+ H PPPA + + +LI+MGFPQ + + H E T GG
Sbjct: 230 ELLTHHVSPPPA-SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGG 288
Query: 303 YTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPN 362
Y CP+C+ + CELP EC++CGLTL+S+PHLARSYHHLFP+ F EI N
Sbjct: 289 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERF---- 344
Query: 363 TCFGCQQSL 371
C+GCQ L
Sbjct: 345 -CYGCQGEL 352
>TFH2_MOUSE (Q9JIB4) TFIIH basal transcription factor complex p44
subunit (Basic transcription factor 2 44 kDa subunit)
(BTF2-p44) (General transcription factor IIH polypeptide
2)
Length = 396
Score = 287 bits (734), Expect = 5e-77
Identities = 151/370 (40%), Positives = 223/370 (59%), Gaps = 32/370 (8%)
Query: 16 DDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAA 75
D+E E + WE Y +R+WE L+EDE+G L+ + A+ +R
Sbjct: 2 DEEPERT----KRWEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEH------ 49
Query: 76 TARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTT 135
+++ G++R+LY+VVD S+ ++D +P+R+ K +E F+ E+FDQNP+S +G++ T
Sbjct: 50 HGQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVT 109
Query: 136 KDGVANCLTDLGGSPESHIKALMGKLE--CSGDASLQNALELVHSNLNQIPSYGHREVLI 193
K A LT+L G+P HI +L ++ C G+ SL N+L + L +P + REVLI
Sbjct: 110 KSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLI 169
Query: 194 LYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFK 253
++S+L+TCDP ++ + I+ K +KIR SVIGL+AE+ +C L +ETGGTY V LDE+H+K
Sbjct: 170 IFSSLTTCDPSNIYDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYK 229
Query: 254 ELILEHSPPPPAIAEYATANLIKMGFPQRA------AEGSVAICTCH------EEAKTGG 301
EL+ H PPPA + + +LI+MGFPQ + + H E T G
Sbjct: 230 ELLAHHVSPPPA-SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG 288
Query: 302 GYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFP 361
GY CP+C+ + CELP EC++CGLTL+S+PHLARSYHHLFP+ F EIS +
Sbjct: 289 GYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLE-----EYKGE 343
Query: 362 NTCFGCQQSL 371
C+GCQ L
Sbjct: 344 RFCYGCQGEL 353
>TF47_SCHPO (O74995) TFIIH basal transcription factor complex p47
subunit (Suppressor of stem-loop protein 1 homolog)
(SSL1 homolog)
Length = 421
Score = 281 bits (718), Expect = 3e-75
Identities = 147/354 (41%), Positives = 213/354 (59%), Gaps = 19/354 (5%)
Query: 20 EANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARI 79
+ +D+ WE Y RSW+ +QED G L + I + +R LR T +
Sbjct: 30 KTDDNEGYTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRD------TTPL 81
Query: 80 QKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGV 139
Q+G+IR++ +V+DLS + ERDF R + K F+ EFF+QNP+S + ++ DG+
Sbjct: 82 QRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGI 141
Query: 140 ANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALS 199
A+ +TDL G+P+SHI+ L +CSG+ SLQNALE+ ++L+ I S+G REVLI++ ++
Sbjct: 142 AHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSIL 201
Query: 200 TCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGT----YSVALDESHFKEL 255
+ DPGD+ +TI IR ++GLAAE+ ICK +C +T + Y V + E HF+EL
Sbjct: 202 SSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFREL 261
Query: 256 ILEHS-PPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCE 314
+LE + PP A+ A+L+ MGFP + E ++C CH + GG+ CPRCK +VC
Sbjct: 262 LLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACH-SIPSRGGFHCPRCKAKVCT 320
Query: 315 LPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQ 368
LP EC C L LI S HLARSYHHLFP+ ++EI S+ H CF CQ
Sbjct: 321 LPIECPSCSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTH-----CFACQ 369
>SSL1_YEAST (Q04673) Suppressor of stem-loop protein 1
Length = 461
Score = 251 bits (641), Expect = 3e-66
Identities = 142/358 (39%), Positives = 204/358 (56%), Gaps = 20/358 (5%)
Query: 24 DGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGL 83
+G AWE RSW+ ++ D+ G + + + + R+ R N Q+G+
Sbjct: 71 NGGYAWEDEIK--RSWDLVKVDDEGDMASLVASIVE----ARKKRTAKKNITP--YQRGI 122
Query: 84 IRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCL 143
IR L + +D S+A E+D RP+R A+I + F+ EFFDQNP+S +G++ ++G+A +
Sbjct: 123 IRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLV 182
Query: 144 TDLGGSPESHIKALMG--KLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTC 201
+ + G+P+ HI AL K E G+ SLQNALE+ L +P++ REVLI++ +LST
Sbjct: 183 SQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTT 242
Query: 202 DPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG----GTYSVALDESHFKELIL 257
DPGD+ +TI KIR V+GL+A++ ICK LC+ T Y + LDE+H KEL
Sbjct: 243 DPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFN 302
Query: 258 EHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPT 317
E P P L+KMGFP R E + C+CH + GGY CP C +VC LPT
Sbjct: 303 EAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKL-VYGGYFCPNCHSKVCSLPT 361
Query: 318 ECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLVLE 375
C C L LI S HLARSYHHL P+ FAE+ P+++ + CF CQ +L+
Sbjct: 362 VCPCCDLMLILSTHLARSYHHLMPLKTFAEV-PTTEKFRSED----CFSCQSRFPILK 414
>TFH2_CAEEL (P34567) Probable TFIIH basal transcription factor
complex p44 subunit (General transcription factor IIH
polypeptide 2)
Length = 376
Score = 234 bits (598), Expect = 3e-61
Identities = 135/362 (37%), Positives = 204/362 (56%), Gaps = 25/362 (6%)
Query: 15 DDDEDEANDDGLEAWERAYTEDRSWES-LQEDESGLLRPIDTTAIHHAQYRRRLRALASN 73
DDDE + WE Y E + L EDE G + + A + A +R+ R
Sbjct: 2 DDDEQKGY-----TWEAGYAEGLNINDVLVEDEGGSIEK--SIAKYVADSKRKARL---T 51
Query: 74 AATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLV 133
RI+ G++R++ IV+D S+ + + PSR V+ K ++ F+ FF+QNP++ +GL+
Sbjct: 52 KRPERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLI 111
Query: 134 TTKDGVANCLTDLGGSPESHIKALMGKLE--CSGDASLQNALELVHSNLNQIPSYGHREV 191
T KD A+ LT + G+ ++L E C GD SLQNAL+L +NL +P + REV
Sbjct: 112 TCKDRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREV 171
Query: 192 LILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESH 251
+++ SALST DPG++ TI+ K+ IRCS IGL+AEMF+CK + + T G YSVALD H
Sbjct: 172 VLVISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDH 231
Query: 252 FKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAK--TGGGYTCPRCK 309
+ L +H+ PP + A+ + N I +GFP + + C CH + K + G+ C +C
Sbjct: 232 LQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCG 290
Query: 310 VRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQ 369
R C +P EC VC LTL+++P LAR++ HL P+ F +I + C+ C+
Sbjct: 291 ARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQIEVTR---------GFCYACET 341
Query: 370 SL 371
L
Sbjct: 342 RL 343
>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4
(26S proteasome regulatory subunit S5A) (Multiubiquitin
chain binding protein) (54 kDa subunit of mu particle)
(p54)
Length = 396
Score = 39.3 bits (90), Expect = 0.022
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVT---TKDGVANCLTD 145
I D S D+ P+R+ V + L NP ++VGL+T T + +A +D
Sbjct: 8 ICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLTSD 67
Query: 146 LGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHR-EVLILYSALSTCDPG 204
G I + M ++ G+ +L + + H L H+ +++ + + G
Sbjct: 68 AG-----RIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEG 122
Query: 205 DLMETIQKCKKSKIRCSVI 223
DL++ ++ KK K+ ++
Sbjct: 123 DLVKQAKRLKKEKVNVDIV 141
>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4
(26S proteasome regulatory subunit S5A) (Rpn10)
(Multiubiquitin chain binding protein)
Length = 376
Score = 36.2 bits (82), Expect = 0.19
Identities = 32/142 (22%), Positives = 60/142 (41%), Gaps = 5/142 (3%)
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGG 148
+ VD S+ DF P+R+ V + NP ++VGL+T + LT L
Sbjct: 8 VCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTL-- 64
Query: 149 SPES-HIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCD-PGDL 206
+P++ I + + ++ G + + + H L H+ +I + D DL
Sbjct: 65 TPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDL 124
Query: 207 METIQKCKKSKIRCSVIGLAAE 228
++ ++ KK K+ +I E
Sbjct: 125 VKLAKRLKKEKVNVDIINFGEE 146
>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4
(26S proteasome regulatory subunit S5A) (Rpn10)
(Multiubiquitin chain binding protein) (Antisecretory
factor-1) (AF) (ASF)
Length = 377
Score = 36.2 bits (82), Expect = 0.19
Identities = 32/142 (22%), Positives = 60/142 (41%), Gaps = 5/142 (3%)
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGG 148
+ VD S+ DF P+R+ V + NP ++VGL+T + LT L
Sbjct: 8 VCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTL-- 64
Query: 149 SPES-HIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCD-PGDL 206
+P++ I + + ++ G + + + H L H+ +I + D DL
Sbjct: 65 TPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDL 124
Query: 207 METIQKCKKSKIRCSVIGLAAE 228
++ ++ KK K+ +I E
Sbjct: 125 VKLAKRLKKEKVNVDIINFGEE 146
>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4
(26S proteasome regulatory subunit S5A) (Multiubiquitin
chain binding protein)
Length = 386
Score = 36.2 bits (82), Expect = 0.19
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLT---- 144
I +D S+ D+ PSR+ + V L NP + VG++T LT
Sbjct: 8 ICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTS 67
Query: 145 DLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPG 204
DLG I A M L+ G+ +L A+++ L + R+ +I+++
Sbjct: 68 DLG-----KILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEK 122
Query: 205 DLMETI-QKCKKSKIRCSVIGLAAE 228
+E + ++ KK+ + ++ +
Sbjct: 123 KALEIVGKRLKKNSVSLDIVNFGED 147
>ASTE_VIBVY (Q7MLE8) Succinylglutamate desuccinylase (EC 3.1.-.-)
Length = 342
Score = 35.0 bits (79), Expect = 0.42
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 88 YIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPL 127
+I +L++ E++ +PS+ VIA Q++L ++ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>ASTE_VIBVU (Q8D926) Succinylglutamate desuccinylase (EC 3.1.-.-)
Length = 342
Score = 35.0 bits (79), Expect = 0.42
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 88 YIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPL 127
+I +L++ E++ +PS+ VIA Q++L ++ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>Y737_PROMM (Q7V7K6) Hypothetical RNA methyltransferase PMT0737 (EC
2.1.1.-)
Length = 465
Score = 33.5 bits (75), Expect = 1.2
Identities = 28/117 (23%), Positives = 49/117 (40%), Gaps = 8/117 (6%)
Query: 322 CGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLVLEQETRLN 381
CG+ IS P A YH + + I+ +++N +S N F C L+L ++ + N
Sbjct: 326 CGIGTISLPIAATGYHVIGLELHAEAITQANKNALRNSLDNVSFLCGDVSLLLAKKLQRN 385
Query: 382 FPSLAQNANNNSALIVTCTFMRV------YIIAQAVRASGILSQLLLPNDFQPYALD 432
+ +V T + + Y+ + L QL++PN PY +D
Sbjct: 386 DVLVLDPPRKGLDQMVIKTILSIQPERVAYLSCDPATLARDLKQLIVPNG--PYQID 440
>SIS2_YEAST (P36024) SIS2 protein (Halotolerance protein HAL3)
Length = 562
Score = 33.5 bits (75), Expect = 1.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 4 IAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDE 46
+ G P N + EDDDEDE DD E TED++ + +D+
Sbjct: 488 LGGYPKNNEEEDDDEDEEEDDD----EEEDTEDKNENNNDDDD 526
>SET_RAT (Q63945) SET protein (Phosphatase 2A inhibitor I2PP2A)
(I-2PP2A) (Template activating factor I) (TAF-I) (Liver
regeneration related protein LRRGR00002) (Ab1-115)
Length = 289
Score = 33.5 bits (75), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (57%)
Query: 11 GDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDE 46
G+ EDDD+D+ ++GLE + ED E EDE
Sbjct: 242 GEAEDDDDDDEEEEGLEDIDEEGDEDEGEEDDDEDE 277
>SET_MOUSE (Q9EQU5) SET protein (Phosphatase 2A inhibitor I2PP2A)
(I-2PP2A) (Template activating factor I) (TAF-I)
Length = 289
Score = 33.5 bits (75), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (57%)
Query: 11 GDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDE 46
G+ EDDD+D+ ++GLE + ED E EDE
Sbjct: 242 GEAEDDDDDDEEEEGLEDIDEEGDEDEGEEDDDEDE 277
>DCD1_HUMAN (P59894) Doublecortin domain-containing protein 1
Length = 354
Score = 33.1 bits (74), Expect = 1.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 86 YLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTD 145
Y YI+ DL R+F S+ + K + +++ F N L H V+ G+ +C T
Sbjct: 46 YKYILNDLP-----REFMSSQAKAVIKTTDDYLQSQFGPNRLVHSAAVSEGSGLQDCSTH 100
Query: 146 LGGSPESH 153
S SH
Sbjct: 101 QTASDHSH 108
>RPNA_SCHPO (O94444) 26S proteasome regulatory subunit rpn10
Length = 243
Score = 32.0 bits (71), Expect = 3.5
Identities = 27/136 (19%), Positives = 56/136 (40%), Gaps = 2/136 (1%)
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGG 148
I++D S+ D+ P+R V + + + NP + GL+T D L+ L
Sbjct: 8 ILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR 67
Query: 149 SPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTC-DPGDLM 207
+ A M L G+A + +++ L + R+ ++ + D +L+
Sbjct: 68 DYGKFLSA-MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLI 126
Query: 208 ETIQKCKKSKIRCSVI 223
++ KK+ + +I
Sbjct: 127 RLAKRMKKNNVAIDII 142
>DPOA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC
2.7.7.7)
Length = 1243
Score = 32.0 bits (71), Expect = 3.5
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 153 HIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCD--PGDLMETI 210
+ K L + G LQN ++LV +NLN YG + +++++ L G + I
Sbjct: 724 YAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVI 783
Query: 211 QKCKKSKIRCSVI---GLAAEMFICKHLCQETGGTYSVALDES 250
Q+ K K RC I G+ M + K ++ VALD S
Sbjct: 784 QEVNK-KYRCLEIDLDGIYKRMLLLK---KKKYAAIKVALDGS 822
>YM09_PARTE (P15610) Hypothetical 22.9 kDa protein (ORF9)
Length = 204
Score = 31.6 bits (70), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (49%)
Query: 11 GDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPID 54
GD DDE+EA+ DG E T D E E+ G ++ +D
Sbjct: 70 GDASSDDEEEASSDGEGVVEDEETLDAEGEDSDEEGEGGMQAVD 113
>PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC
2.7.1.37) (p21-activated kinase 4) (PAK-4)
Length = 593
Score = 31.2 bits (69), Expect = 6.0
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 260 SPPPPAIAEYATANLIKMGFPQRAA---EGSVAICTCHEEAKTGGG 302
SPPPPA A L + P R A GS A T H EA +G G
Sbjct: 104 SPPPPARAHQENGMLEERAAPARMAPDKAGSRARATGHSEAGSGSG 149
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,624,735
Number of Sequences: 164201
Number of extensions: 2366618
Number of successful extensions: 7555
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7492
Number of HSP's gapped (non-prelim): 45
length of query: 471
length of database: 59,974,054
effective HSP length: 114
effective length of query: 357
effective length of database: 41,255,140
effective search space: 14728084980
effective search space used: 14728084980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC135795.5