BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.1 - phase: 0
(694 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TRA5_LACLA (P35881) Transposase for insertion sequence element I... 44 0.001
PCNA_METMA (Q8PX25) DNA polymerase sliding clamp (Proliferating ... 35 0.51
OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Prot... 35 0.51
PLP_RICPR (Q9ZCX6) Parvulin-like PPIase precursor (EC 5.2.1.8) (... 34 1.5
YC55_CYACA (O19888) Hypothetical 36.5 kDa protein ycf55 33 3.3
TRPD_NEIMB (P66995) Anthranilate phosphoribosyltransferase (EC 2... 32 4.3
TRPD_NEIMA (P66994) Anthranilate phosphoribosyltransferase (EC 2... 32 4.3
RPOC_PINTH (P52733) DNA-directed RNA polymerase beta' chain (EC ... 32 4.3
RAPA_PHOLL (Q7N8V1) RNA polymerase associated protein rapA (EC 3... 32 4.3
PLP_RICCN (Q92H91) Parvulin-like PPIase precursor (EC 5.2.1.8) (... 32 4.3
TRA1_LACHE (P35880) Transposase for insertion sequence element I... 32 5.6
IF2_PROMA (Q7VA20) Translation initiation factor IF-2 32 5.6
DTD_ENTFA (Q833H9) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 32 5.6
RAPA_VIBPA (Q87LD0) RNA polymerase associated protein rapA (EC 3... 32 7.4
O49B_DROME (Q9V6H2) Odorant receptor 49b 32 7.4
LA_AEDAL (Q26457) La protein homolog (La ribonucleoprotein) (La ... 32 7.4
RAPA_VIBVY (Q7MHE6) RNA polymerase associated protein rapA (EC 3... 31 9.6
RAPA_VIBVU (Q8DCG1) RNA polymerase associated protein rapA (EC 3... 31 9.6
PCNA_METAC (Q8TUF7) DNA polymerase sliding clamp (Proliferating ... 31 9.6
P2L2_MOUSE (Q9JLG4) Polycystic kidney disease 2-like 2 protein (... 31 9.6
>TRA5_LACLA (P35881) Transposase for insertion sequence element
IS905
Length = 391
Score = 43.9 bits (102), Expect = 0.001
Identities = 41/198 (20%), Positives = 84/198 (41%), Gaps = 13/198 (6%)
Query: 236 VGVNHHGQSVLLGCALLSNEDTKTFSWLFKTWLECMHGRAPNAIITDQDRAMKKAIEDVF 295
+G+ GQ +LG + NE+ ++S L L+ + + ++TD + +++ I +
Sbjct: 183 LGITPEGQKAVLGYEIAPNENNASWSTLLDK-LQNQGIQQVSLVVTDGFKGLEQIISQAY 241
Query: 296 PKARHRWCLWHLMKKVPEKLGRHSH---YESIKLLLHDAVYDSS--SISDFMEKWK---- 346
P A+ + CL H+ + + K+ R E K + + + ++ +F+ +WK
Sbjct: 242 PLAKQQRCLIHISRNLASKVKRADRAVILEQFKTIYRAENLEMAVQALENFIAEWKPKYR 301
Query: 347 KMIECYELHDNEWLKGLFDERYR-WVPVYVRDTFWAGMSTTQRSESMNSFFDGYVSSKTT 405
K++E E DN L + Y+ W +Y + + +R F + +
Sbjct: 302 KVMESLENTDN--LLTFYQFPYQIWHSIYSTNLIESLNKEIKRQTKKKVLFPNEEALERY 359
Query: 406 LKQFVEQYDNALKDKIEK 423
L E Y+ +I K
Sbjct: 360 LVTLFEDYNFKQSQRIHK 377
>PCNA_METMA (Q8PX25) DNA polymerase sliding clamp (Proliferating
cell nuclear antigen homolog) (PCNA)
Length = 245
Score = 35.4 bits (80), Expect = 0.51
Identities = 29/114 (25%), Positives = 55/114 (47%), Gaps = 9/114 (7%)
Query: 547 ILSRWRKDIKRRHTLIKCGFDGNVELQLVGKACDAFYEV------VSVGIHTEDDLLKVM 600
I+ R IK +K NV + + AF E + + ++ DLL +
Sbjct: 21 IVDEVRFKIKPEGISVKAVDPANVAMGIFELGSSAFEEYSADECEIGIDLNKITDLLGIA 80
Query: 601 NRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGRPPSKRKASKL 654
+R + +++EL+ EGS+ ++I+ L + +LDP+T R++ R P +K+
Sbjct: 81 DRNDTVRMELD-EGSNKLLIDVGGL--SYTLSLLDPSTIRAEPRVPQLELPAKV 131
>OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Protein
71-7A)
Length = 1012
Score = 35.4 bits (80), Expect = 0.51
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 593 EDDLLKVMNRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGRPPSKRKAS 652
+++L + +NR+ EL++EL + S+ I + + + N+ K + S K
Sbjct: 393 KEELNQSVNRVKELELELESVKAQSLAITKQNHMLNEKVKEMSDY---------SLLKEE 443
Query: 653 KLDQIVQKKVLR---KKTQNRNNKSNNYLSQEEVTLKIFK 689
KL+ + Q K+L+ ++++N N + N L+Q L +F+
Sbjct: 444 KLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELAVFQ 483
>PLP_RICPR (Q9ZCX6) Parvulin-like PPIase precursor (EC 5.2.1.8)
(Peptidyl-prolyl cis-trans isomerase plp) (Rotamase plp)
(29.5 kDa outer membrane antigen)
Length = 282
Score = 33.9 bits (76), Expect = 1.5
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 401 SSKTTLKQFVEQYDNALKDKIEKESMADFVSFNTTIACISLFGFESQFQKAFTNAKFKEF 460
SS T+ K+F E+ +NA ++E +A+++ N T F+ ++ K N K KE
Sbjct: 86 SSITSSKEFQEKLENAKNQLAQQELLANYIKSNITDKM-----FDDEYNKYVDNLKGKE- 139
Query: 461 QIEIASMI 468
QI++A ++
Sbjct: 140 QIKVAHIL 147
>YC55_CYACA (O19888) Hypothetical 36.5 kDa protein ycf55
Length = 308
Score = 32.7 bits (73), Expect = 3.3
Identities = 27/104 (25%), Positives = 46/104 (43%), Gaps = 4/104 (3%)
Query: 352 YELHDNEWLKGLFDERYRWVPVYVRDTFWAGMSTTQRSESMNSFFDGYVSSKTTLKQF-V 410
Y L + W+K D++ ++ + + F + + TTQ+ NS F G++ T +
Sbjct: 194 YALRGHSWIKSFKDKQRLFIYLLLSSYFHSIIDTTQKLN--NSIFRGWIVRGTYIDSISF 251
Query: 411 EQYDNALKDKIEKESMADFVSFNTTIACISLFGFESQF-QKAFT 453
EQ+ K+ K S+ F+ N I F F +KA T
Sbjct: 252 EQFSLTSLKKLPKISLLVFLLINVIDTVIPQFNLFILFLRKAIT 295
>TRPD_NEIMB (P66995) Anthranilate phosphoribosyltransferase (EC
2.4.2.18)
Length = 352
Score = 32.3 bits (72), Expect = 4.3
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 3/67 (4%)
Query: 545 CYILSRWRKDIKRRHTLIKCGFDGNVELQLVGKACDAFY---EVVSVGIHTEDDLLKVMN 601
C ILSR + + +H L+ CG G E+ L GK A ++ I ED ++
Sbjct: 203 CGILSRVLQQLGSKHVLVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRR 262
Query: 602 RINELKI 608
++E+K+
Sbjct: 263 NLDEIKV 269
>TRPD_NEIMA (P66994) Anthranilate phosphoribosyltransferase (EC
2.4.2.18)
Length = 352
Score = 32.3 bits (72), Expect = 4.3
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 3/67 (4%)
Query: 545 CYILSRWRKDIKRRHTLIKCGFDGNVELQLVGKACDAFY---EVVSVGIHTEDDLLKVMN 601
C ILSR + + +H L+ CG G E+ L GK A ++ I ED ++
Sbjct: 203 CGILSRVLQQLGSKHVLVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRR 262
Query: 602 RINELKI 608
++E+K+
Sbjct: 263 NLDEIKV 269
>RPOC_PINTH (P52733) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 696
Score = 32.3 bits (72), Expect = 4.3
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 589 GIHTEDDL----LKVMNRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGR 644
G+ T DL +V+NR N L L GS S +I + L+Q + +LD R R
Sbjct: 302 GLITSSDLNELYRRVINRNNTLTNLLARSGSESFVIYQTKLIQEAVDALLDNGICRQPMR 361
Query: 645 PPSKRKASKLDQIVQKKVLRKKTQNRNNKSNNYLSQEEVTLKIFKFIF 692
R +++ K R + +N K +Y + + + F ++
Sbjct: 362 DSHNRPYKSFSDVIEGKEGRFR-ENLLGKRVDYSGRSVIVVGPFLSLY 408
>RAPA_PHOLL (Q7N8V1) RNA polymerase associated protein rapA (EC
3.6.1.-) (ATP-dependent helicase hepA)
Length = 970
Score = 32.3 bits (72), Expect = 4.3
Identities = 24/105 (22%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 307 LMKKVPEKLGRHSHYESIKLLLHDAVYDSSSISDFMEKWKKMIECY-------ELHDNEW 359
L+ PE+LG+ SH+ ++LL + +D + D +K++ + + +L++N+
Sbjct: 311 LLTATPEQLGQESHFARLRLLDPNRFHDYQTFIDEQQKYRPVADAVTLLLSGEQLNNNQL 370
Query: 360 -LKGLFDERYRWVPVYVRDTFWAGMSTTQRSESMNSFFDGYVSSK 403
L G P+ +G S T R E ++ D + +S+
Sbjct: 371 NLMGELISEQNIEPLLKAANSNSGESETARRELISMLMDRHGTSR 415
>PLP_RICCN (Q92H91) Parvulin-like PPIase precursor (EC 5.2.1.8)
(Peptidyl-prolyl cis-trans isomerase plp) (Rotamase plp)
Length = 282
Score = 32.3 bits (72), Expect = 4.3
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 401 SSKTTLKQFVEQYDNALKDKIEKESMADFVSFNTTIACISLFGFESQFQKAFTNAKFKEF 460
S+ T+ K+F E+ +NA ++E +A+++ N T F+ ++ K N K KE
Sbjct: 86 SNITSSKEFQEKLENAKNQLAQQELLANYIKSNITDKM-----FDDEYNKYVGNLKGKE- 139
Query: 461 QIEIASMI 468
QI++A ++
Sbjct: 140 QIKVAHIL 147
>TRA1_LACHE (P35880) Transposase for insertion sequence element
IS1201
Length = 369
Score = 32.0 bits (71), Expect = 5.6
Identities = 19/83 (22%), Positives = 41/83 (48%), Gaps = 7/83 (8%)
Query: 236 VGVNHHGQSVLLGCALLSNEDTKTFSWLFKTWLECMHGRAPNAI---ITDQDRAMKKAIE 292
+G+ +G ++ + NE+ + ++ L L+ M R + ++D MK A+
Sbjct: 183 IGIKPNGHKEVIDYCIAPNENIEVWTEL----LQSMKSRGLEQVELFLSDGVVGMKTALA 238
Query: 293 DVFPKARHRWCLWHLMKKVPEKL 315
+P+A + CL H+M+ + K+
Sbjct: 239 KTYPQAHFQRCLVHVMRNICAKV 261
>IF2_PROMA (Q7VA20) Translation initiation factor IF-2
Length = 1134
Score = 32.0 bits (71), Expect = 5.6
Identities = 25/102 (24%), Positives = 50/102 (48%), Gaps = 9/102 (8%)
Query: 586 VSVGIHTED-DLLKVMNRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGR 644
+S +H E+ D+L N K+ ++ + SS I +ED+ ++ K+L + +
Sbjct: 12 LSRDLHLENKDVLDAAN-----KLSISAKSHSSSISDEDA---TKIKKLLLAQKSSNSSS 63
Query: 645 PPSKRKASKLDQIVQKKVLRKKTQNRNNKSNNYLSQEEVTLK 686
PP+K+K +K ++K + T++ N N + +LK
Sbjct: 64 PPAKQKPNKEILTLKKAITSPPTKSEANAKTNASLDKTSSLK 105
>DTD_ENTFA (Q833H9) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)
Length = 148
Score = 32.0 bits (71), Expect = 5.6
Identities = 28/89 (31%), Positives = 49/89 (54%), Gaps = 6/89 (6%)
Query: 570 VELQLVGKACDAFYEVVSVGIHTED---DLLKVMNRINELKIELNCEGSSSVIIEEDSLV 626
+E Q+VG+ F +V VGIH ED D+ V+ +I++L++ + EG + I+E
Sbjct: 15 IEEQIVGQIKQGF--MVLVGIHQEDTPEDVAYVVGKISKLRVFEDDEGKMNRSIQEIEGS 72
Query: 627 QNQMAKILDPATTRSKGRPPSKRKASKLD 655
+++ A T+ KG PS +A++ D
Sbjct: 73 ILSISQFTLYAKTK-KGNRPSFIEAARPD 100
>RAPA_VIBPA (Q87LD0) RNA polymerase associated protein rapA (EC
3.6.1.-) (ATP-dependent helicase hepA)
Length = 969
Score = 31.6 bits (70), Expect = 7.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 307 LMKKVPEKLGRHSHYESIKLLLHDAVYDSSSISDFMEKW 345
L+ PE+LGR SH+ ++LL D YD + + E++
Sbjct: 311 LLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEEQY 349
>O49B_DROME (Q9V6H2) Odorant receptor 49b
Length = 375
Score = 31.6 bits (70), Expect = 7.4
Identities = 24/115 (20%), Positives = 52/115 (44%), Gaps = 4/115 (3%)
Query: 492 VYDRFKDTRFRVIFNEKDFEIQCACCLFEFKGILCRHILCVLQLTGKTESVPSCYILSRW 551
+Y K RF + +K+ L F I + + + G T + + Y+L W
Sbjct: 8 IYMNIKILRFWALLYDKNLRRYVCIGLASFH-IFTQIVYMMSTNEGLTGIIRNSYMLVLW 66
Query: 552 RKDIKRRHTLIKCGFDGNVELQLVGKACDAFYEVVSVGIHTEDDLLKVMNRINEL 606
+ R + L+ D + L L+ K +A+Y+++++ ++L +N++ +L
Sbjct: 67 INTVLRAYLLLA---DHDRYLALIQKLTEAYYDLLNLNDSYISEILDQVNKVGKL 118
>LA_AEDAL (Q26457) La protein homolog (La ribonucleoprotein) (La
autoantigen homolog)
Length = 383
Score = 31.6 bits (70), Expect = 7.4
Identities = 32/124 (25%), Positives = 61/124 (48%), Gaps = 15/124 (12%)
Query: 548 LSRWRKDIKR---RHTLIKCGFDGNVELQLVGKACDAFYEVVSVGIHTEDDLLKVMNRIN 604
LS + KD R + T++K D ++E+ + A V +D K M ++
Sbjct: 258 LSGFNKDTSRETIKETILK--LDESLEVAFIDYAKTDTEGTVRFA--ADDAGKKFMEKLT 313
Query: 605 ELKIELNCEGSSSVIIEEDS-------LVQNQMAKILDPATTRSKGRPPSKRKASKLDQI 657
+ KI+++ E ++ ++E D +V++Q A+ + R+KGR P R+AS+ Q
Sbjct: 314 DSKIQIDEEEITARLLEGDEEKEFLRKVVKDQQAR-RQASNARNKGRTPEGRQASRPPQE 372
Query: 658 VQKK 661
++K
Sbjct: 373 WRRK 376
>RAPA_VIBVY (Q7MHE6) RNA polymerase associated protein rapA (EC
3.6.1.-) (ATP-dependent helicase hepA)
Length = 969
Score = 31.2 bits (69), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 307 LMKKVPEKLGRHSHYESIKLLLHDAVYD 334
L+ PE+LGR SH+ ++LL D YD
Sbjct: 311 LLTATPEQLGRESHFARLRLLDSDRFYD 338
>RAPA_VIBVU (Q8DCG1) RNA polymerase associated protein rapA (EC
3.6.1.-) (ATP-dependent helicase hepA)
Length = 969
Score = 31.2 bits (69), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 307 LMKKVPEKLGRHSHYESIKLLLHDAVYD 334
L+ PE+LGR SH+ ++LL D YD
Sbjct: 311 LLTATPEQLGRESHFARLRLLDSDRFYD 338
>PCNA_METAC (Q8TUF7) DNA polymerase sliding clamp (Proliferating
cell nuclear antigen homolog) (PCNA)
Length = 245
Score = 31.2 bits (69), Expect = 9.6
Identities = 28/114 (24%), Positives = 53/114 (45%), Gaps = 9/114 (7%)
Query: 547 ILSRWRKDIKRRHTLIKCGFDGNVELQLVGKACDAFYEV------VSVGIHTEDDLLKVM 600
I+ R IK +K NV + + AF E + + ++ DLL +
Sbjct: 21 IVDEVRFKIKPEGISVKAVDPANVAMGIFELGSSAFDEYSADECEIGLDLNKITDLLGIA 80
Query: 601 NRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGRPPSKRKASKL 654
+R + +++ L EGS+ ++I+ L + +LDP+T R++ R P +K+
Sbjct: 81 DRNDTVRMGLE-EGSNKLLIDVGGL--SYTLSLLDPSTIRAEPRVPQLELPAKV 131
>P2L2_MOUSE (Q9JLG4) Polycystic kidney disease 2-like 2 protein
(Polycystin-L2)
Length = 621
Score = 31.2 bits (69), Expect = 9.6
Identities = 42/170 (24%), Positives = 68/170 (39%), Gaps = 31/170 (18%)
Query: 401 SSKTTLKQFVEQYDNALKDKIEKESMADFVSFNTTIACISLF-------------GFESQ 447
S T +FV D L + I + + A F+ F+ A ++LF G +
Sbjct: 207 SKSETKAKFV---DLRLNNWISRGTRAVFIDFSLYNANVNLFCIIRLLAEFPATGGLLTS 263
Query: 448 FQ----KAFTNAKFKEFQIEIASMIYCNAFLEGMENLNSTFCVIESKKVYDRFKDTRFRV 503
+Q K + ++ I +I+C FL F + E +KV + FK FR
Sbjct: 264 WQFYSVKLLRYVSYYDYFIASCEVIFC-IFL-------FVFIIQELRKV-NEFKSAYFRS 314
Query: 504 IFNEKDFEIQCACCLFEFKGILC--RHILCVLQLTGKTESVPSCYILSRW 551
++N + + C L C + L + QL T+S P Y L+ W
Sbjct: 315 VWNWLEMLLLLLCFLAVSFYAYCNMQSFLLLGQLLKNTDSYPDFYFLAYW 364
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,089,035
Number of Sequences: 164201
Number of extensions: 3356458
Number of successful extensions: 8288
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8282
Number of HSP's gapped (non-prelim): 24
length of query: 694
length of database: 59,974,054
effective HSP length: 117
effective length of query: 577
effective length of database: 40,762,537
effective search space: 23519983849
effective search space used: 23519983849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC135795.1