BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135566.1 + phase: 0 /pseudo
(437 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17 (... 35 0.50
CYA9_XENLA (P98999) Adenylate cyclase, type IX (EC 4.6.1.1) (ATP... 34 0.65
TPA2_BACFR (Q45119) Transposase for insertion sequence element I... 34 0.85
TOP1_HUMAN (P11387) DNA topoisomerase I (EC 5.99.1.2) 34 0.85
SFR3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre... 34 0.85
SFR3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre... 34 0.85
GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1N5 (P12493) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1BR (P03348) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17 (... 33 1.1
YH32_AQUAE (O67622) Hypothetical UPF0144 protein AQ_1732 33 1.4
GAG_HV1W2 (P05889) Gag polyprotein [Contains: Core protein p17 (... 33 1.4
ST6G_MOUSE (Q9CZV5) STAGA complex 65 gamma subunit 33 1.9
ZCH5_HUMAN (Q8N8U3) Zinc finger CCHC domain containing protein 5 32 2.5
YPI1_VIBAL (P52055) Hypothetical UPF0001 protein in pilT-proC in... 32 2.5
GAG_HV1OY (P20889) Gag polyprotein [Contains: Core protein p17 (... 32 2.5
GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17 (... 32 2.5
>GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 34.7 bits (78), Expect = 0.50
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+YL RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYLDRFY-KTLRAEQASQEV 312
>CYA9_XENLA (P98999) Adenylate cyclase, type IX (EC 4.6.1.1) (ATP
pyrophosphate-lyase) (Adenylyl cyclase) (xlAC)
Length = 1305
Score = 34.3 bits (77), Expect = 0.65
Identities = 16/49 (32%), Positives = 26/49 (52%)
Query: 190 QFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGER 238
Q + SI + P D + ++ + V+ AE+K +A+ERG GG R
Sbjct: 1257 QVDGSIGRSPTDEISSLVTGGKGAVELGSGEAERKREKAEERGRDGGAR 1305
>TPA2_BACFR (Q45119) Transposase for insertion sequence element
IS21-like
Length = 520
Score = 33.9 bits (76), Expect = 0.85
Identities = 30/126 (23%), Positives = 55/126 (42%), Gaps = 6/126 (4%)
Query: 146 FNVRQGPSESLREYLARFNDSTIKVSNPNQEVFVGAFQNG---LWAGQFNESIAQKPADS 202
+ + Q P E ++EY R D+T++ + G +++G +W Q E + +
Sbjct: 319 YGLPQPPQEQMKEYHVR-KDNTVQYRGNYYSLPCGTYRSGQTRVWL-QETEGYVELYSKE 376
Query: 203 MEEIIARAE-CYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQN 261
+I+AR C KG+ E+ R ER YV NR+ + + +R +
Sbjct: 377 TGKIVARHPLCTRKGKTIYDERHRRPKSIGAQKLAERILVYVSGNREVALWMENLKRKKE 436
Query: 262 RYVPEH 267
RY ++
Sbjct: 437 RYYKDN 442
>TOP1_HUMAN (P11387) DNA topoisomerase I (EC 5.99.1.2)
Length = 765
Score = 33.9 bits (76), Expect = 0.85
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 204 EEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDRGTFKKPYERNQNRY 263
E++ A + +K E+ N + K+ G ++VPP D K+P + + Y
Sbjct: 92 EKVRASGDAKIKKEKENGFSSPPQIKDEPEDDG----YFVPPKEDIKPLKRPRDEDDADY 147
Query: 264 VPEHFTPLNTRPE--RILKEVFESKIIPP 290
P+ +T+ E R L+E + K+ P
Sbjct: 148 KPKKIKTEDTKKEKKRKLEEEEDGKLKKP 176
>SFR3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3
(Pre-mRNA splicing factor SRP20) (X16 protein)
Length = 164
Score = 33.9 bits (76), Expect = 0.85
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 200 ADSMEEIIARA--ECYVKGEESNAEKKAREAKERGNSGGERRNHY---VPPNRDRGTFKK 254
AD++ E+ R C V+ E SN EK++R + G R+ Y PP R R ++
Sbjct: 60 ADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRR 119
Query: 255 PYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSRAR 297
+ R+++R + + R ER L K P FSR+R
Sbjct: 120 SFSRSRSRSLSR-----DRRRERSLSRERNHK--PSRSFSRSR 155
>SFR3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3
(Pre-mRNA splicing factor SRP20)
Length = 164
Score = 33.9 bits (76), Expect = 0.85
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 200 ADSMEEIIARA--ECYVKGEESNAEKKAREAKERGNSGGERRNHY---VPPNRDRGTFKK 254
AD++ E+ R C V+ E SN EK++R + G R+ Y PP R R ++
Sbjct: 60 ADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRR 119
Query: 255 PYERNQNRYVPEHFTPLNTRPERILKEVFESKIIPPPPFSRAR 297
+ R+++R + + R ER L K P FSR+R
Sbjct: 120 SFSRSRSRSLSR-----DRRRERSLSRERNHK--PSRSFSRSR 155
>GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1N5 (P12493) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1BR (P03348) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQEV 312
>YH32_AQUAE (O67622) Hypothetical UPF0144 protein AQ_1732
Length = 558
Score = 33.1 bits (74), Expect = 1.4
Identities = 41/170 (24%), Positives = 68/170 (39%), Gaps = 23/170 (13%)
Query: 190 QFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRDR 249
Q E K + ++E +AE +K + +AEK REA+E+ V ++
Sbjct: 41 QILEEAKSKAEEIIKEAKEKAEVILKEAKESAEKIVREAEEKAEKLIREAKEEVERIKEE 100
Query: 250 GTFKKP--YERNQN-----RYVPEHFTPLNTRPERILKEVFESKIIPPPPFSRARVMGQD 302
+K ER +N R++ + L R E +L E K F R+ +D
Sbjct: 101 VERRKKELKEREENVLAKERHLDRRWEALEKREEELLHRERELK-----DFERSLERWRD 155
Query: 303 KDAWCKYHLVQGHNTDDCVHLKREIEKLLLS--GKLRGYAKERRHNERQE 350
+ H ++ H+K E+E+L +L+ AK RQE
Sbjct: 156 EIR---------HKEEELKHMKEEVEELKKKELEELQRIAKLTLEEARQE 196
>GAG_HV1W2 (P05889) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein)]
(Fragment)
Length = 388
Score = 33.1 bits (74), Expect = 1.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ QEV
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQATQEV 312
>ST6G_MOUSE (Q9CZV5) STAGA complex 65 gamma subunit
Length = 412
Score = 32.7 bits (73), Expect = 1.9
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 8 LLEQNEALLASVETIQQVQQQEKTDSHHGDLDEPEP------------QPFSAKIWNAPV 55
L++ N L + + T Q Q Q++T+ + EP P QP K NAP
Sbjct: 67 LIQHNRRLRSLIATAQ-TQSQQQTEGVKAEESEPLPSCPGSPPLPDDLQPLDCKNPNAPF 125
Query: 56 PDNFKPPHLPTFDGRGDPSEHVTVFNTRMSVY 87
P + G+G+P ++ + R +Y
Sbjct: 126 QIRHSDPESDFYRGKGEPVTELSWHSCRQLLY 157
>ZCH5_HUMAN (Q8N8U3) Zinc finger CCHC domain containing protein 5
Length = 475
Score = 32.3 bits (72), Expect = 2.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 2 KSQIALLLEQNEALLASVETIQQVQQQEKTDSHHGDLDEPEPQPFSAKI-----WNAPVP 56
++Q+ L+E+N AL A + +Q+ Q ++ D + EPQ + W A
Sbjct: 20 QAQVQWLMEENAALQAQIPELQKSQAAKEYDLLRKSSEAKEPQKLPEHMNPPAAWEAQKT 79
Query: 57 DNFKPPHLP 65
FK P P
Sbjct: 80 PEFKEPQKP 88
>YPI1_VIBAL (P52055) Hypothetical UPF0001 protein in pilT-proC
intergenic region (ORF1)
Length = 233
Score = 32.3 bits (72), Expect = 2.5
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 189 GQFNESIAQKPADSMEEIIARAECYVKGEESNAEKKAREAKERGNSGGERRNHYVPPNRD 248
G+ ES+ + + A E Y G+ + E +E + E HY P NR
Sbjct: 23 GRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAE---HY-PDNRI 78
Query: 249 RGTFKKPYERNQNRYVPEHFTPLNT 273
F P + N++R V EHF ++T
Sbjct: 79 EWHFIGPIQSNKSRLVAEHFDWVHT 103
>GAG_HV1OY (P20889) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 498
Score = 32.3 bits (72), Expect = 2.5
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +Q+V
Sbjct: 279 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQDV 312
>GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 501
Score = 32.3 bits (72), Expect = 2.5
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 143 TSLFNVRQGPSESLREYLARFNDSTIKVSNPNQEV 177
TS+ ++RQGP E R+Y+ RF T++ +Q+V
Sbjct: 281 TSILDIRQGPKEPFRDYVDRFY-KTLRAEQASQDV 314
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,978,899
Number of Sequences: 164201
Number of extensions: 2614197
Number of successful extensions: 6672
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 6656
Number of HSP's gapped (non-prelim): 50
length of query: 437
length of database: 59,974,054
effective HSP length: 113
effective length of query: 324
effective length of database: 41,419,341
effective search space: 13419866484
effective search space used: 13419866484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC135566.1