BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135565.5 + phase: 0 /pseudo
         (93 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni...    32  0.37
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...    30  1.4
DDR1_RAT (Q63474) Epithelial discoidin domain receptor 1 precurs...    28  3.1
DDR1_PANTR (Q7YR43) Epithelial discoidin domain receptor 1 precu...    28  3.1
DDR1_MOUSE (Q03146) Epithelial discoidin domain receptor 1 precu...    28  3.1
DDR1_HUMAN (Q08345) Epithelial discoidin domain receptor 1 precu...    28  3.1
N205_HUMAN (Q92621) Nuclear pore complex protein Nup205 (Nucleop...    28  5.3

>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
           region
          Length = 723

 Score = 31.6 bits (70), Expect = 0.37
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 29  PFGGKVFVLVGDFRQVLPVVRVATRQQIVSSAVNASKVWRRC 70
           PFGG   VL GDF Q+ PV +    +  V      S++W+RC
Sbjct: 363 PFGGIQLVLTGDFFQLPPVAK--KDEHNVVKFCFESEMWKRC 402


>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
           mitochondrial precursor
          Length = 805

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/67 (31%), Positives = 29/67 (42%), Gaps = 8/67 (11%)

Query: 27  TKPFGGKVFVLVGDFRQVLPVVRVATRQQIVSSAVNASKVWRRCEVLRLTMNMGLSTANN 86
           +KPFGG   VL GDF Q+ PV       +        S+ W+      L   +GL+    
Sbjct: 441 SKPFGGIQLVLTGDFFQLPPVPENGKESKFCFE----SQTWKSA----LDFTIGLTHVFR 492

Query: 87  NADQEEV 93
             D+E V
Sbjct: 493 QKDEEFV 499


>DDR1_RAT (Q63474) Epithelial discoidin domain receptor 1 precursor
           (EC 2.7.1.112) (Tyrosine kinase DDR) (Discoidin receptor
           tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell
           adhesion kinase) (Protein-tyrosine kinase PTK-3)
          Length = 910

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 21/66 (31%), Positives = 28/66 (41%), Gaps = 5/66 (7%)

Query: 7   FVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDF-----RQVLPVVRVATRQQIVSSAV 61
           FV  D   RN +  EN   K   FG    +  GD+     R VLP+  +A    ++    
Sbjct: 759 FVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFT 818

Query: 62  NASKVW 67
            AS VW
Sbjct: 819 TASDVW 824


>DDR1_PANTR (Q7YR43) Epithelial discoidin domain receptor 1
           precursor (EC 2.7.1.112) (Tyrosine kinase DDR)
           (Discoidin receptor tyrosine kinase)
          Length = 909

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 21/66 (31%), Positives = 28/66 (41%), Gaps = 5/66 (7%)

Query: 7   FVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDF-----RQVLPVVRVATRQQIVSSAV 61
           FV  D   RN +  EN   K   FG    +  GD+     R VLP+  +A    ++    
Sbjct: 758 FVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFT 817

Query: 62  NASKVW 67
            AS VW
Sbjct: 818 TASDVW 823


>DDR1_MOUSE (Q03146) Epithelial discoidin domain receptor 1
           precursor (EC 2.7.1.112) (Tyrosine kinase DDR)
           (Discoidin receptor tyrosine kinase) (Tyrosine-protein
           kinase CAK) (Cell adhesion kinase) (Protein-tyrosine
           kinase MPK-6)
          Length = 911

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 21/66 (31%), Positives = 28/66 (41%), Gaps = 5/66 (7%)

Query: 7   FVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDF-----RQVLPVVRVATRQQIVSSAV 61
           FV  D   RN +  EN   K   FG    +  GD+     R VLP+  +A    ++    
Sbjct: 760 FVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFT 819

Query: 62  NASKVW 67
            AS VW
Sbjct: 820 TASDVW 825


>DDR1_HUMAN (Q08345) Epithelial discoidin domain receptor 1
           precursor (EC 2.7.1.112) (Tyrosine kinase DDR)
           (Discoidin receptor tyrosine kinase) (Tyrosine-protein
           kinase CAK) (Cell adhesion kinase) (TRK E)
           (Protein-tyrosine kinase RTK 6) (CD167a antigen) (
          Length = 913

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 21/66 (31%), Positives = 28/66 (41%), Gaps = 5/66 (7%)

Query: 7   FVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDF-----RQVLPVVRVATRQQIVSSAV 61
           FV  D   RN +  EN   K   FG    +  GD+     R VLP+  +A    ++    
Sbjct: 762 FVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFT 821

Query: 62  NASKVW 67
            AS VW
Sbjct: 822 TASDVW 827


>N205_HUMAN (Q92621) Nuclear pore complex protein Nup205
           (Nucleoporin Nup205) (205 kDa nucleoporin)
          Length = 2012

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 11/37 (29%), Positives = 22/37 (58%)

Query: 40  DFRQVLPVVRVATRQQIVSSAVNASKVWRRCEVLRLT 76
           ++ Q+L  VR+ +++Q +   V  +++  RCE   LT
Sbjct: 668 EYTQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLT 704


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,742,103
Number of Sequences: 164201
Number of extensions: 296824
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 59,974,054
effective HSP length: 69
effective length of query: 24
effective length of database: 48,644,185
effective search space: 1167460440
effective search space used: 1167460440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)