BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.11 + phase: 0
(225 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PPNK_METJA (Q58327) Probable inorganic polyphosphate/ATP-NAD kin... 41 0.002
DD20_MOUSE (Q9JJY4) Probable ATP-dependent RNA helicase DDX20 (D... 36 0.064
TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 32 0.93
UVRA_STRR6 (P63385) UvrABC system protein A (UvrA protein) (Exci... 32 1.2
UVRA_STRPN (P63384) UvrABC system protein A (UvrA protein) (Exci... 32 1.2
PC15_HUMAN (Q96QU1) Protocadherin 15 precursor 32 1.2
PC15_MOUSE (Q99PJ1) Protocadherin 15 precursor 32 1.6
CPT7_MESAU (P70687) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII... 31 2.1
DMD_MOUSE (P11531) Dystrophin 31 2.7
DMD_CHICK (P11533) Dystrophin 31 2.7
UVRA_LISMO (Q8Y4F6) UvrABC system protein A (UvrA protein) (Exci... 30 4.6
HS74_MOUSE (Q61316) Heat shock 70-related protein APG-2 30 4.6
DMD_CANFA (O97592) Dystrophin 30 4.6
DMD_HUMAN (P11532) Dystrophin 30 6.0
ATS1_RAT (Q9WUQ1) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegri... 30 6.0
ATS1_MOUSE (P97857) ADAMTS-1 precursor (EC 3.4.24.-) (A disinteg... 30 6.0
UVRA_BACSU (O34863) UvrABC system protein A (UvrA protein) (Exci... 29 7.9
AROG_CANAL (P79023) Phospho-2-dehydro-3-deoxyheptonate aldolase,... 29 7.9
>PPNK_METJA (Q58327) Probable inorganic polyphosphate/ATP-NAD kinase
(EC 2.7.1.23) (Poly(P)/ATP NAD kinase)
Length = 574
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/165 (24%), Positives = 77/165 (45%), Gaps = 18/165 (10%)
Query: 42 KNETPQVLKIAVSGVTELLRLFSPPQQTSVLSDDIEKQNND-STVSSVEDVLIIIKSD-- 98
K+E +++ + G E+ ++ S LS I K N T S++ ++++I K+
Sbjct: 395 KDEVFEIIDKVIYGEYEI-------EKRSKLSCKIIKDNRVIKTPSALNEMVVITKNPAK 447
Query: 99 -YDNDYFVTGNFTSSIYTENCIFEDPTIKFSGRDLYARNL--KLLVPFFDCASIKLLKIE 155
+ D +V ++ + I PT G Y+ + ++ P DC I +
Sbjct: 448 ILEFDVYVNDTLVENVRADGIIVSTPT----GSTAYSLSAGGPIVEPNVDCFIISPICPF 503
Query: 156 KEVESDTNFLRASWKLRTNLKLPWRPLIAIDGSTSYELNEDFKIV 200
K + S + AS +++ LKL L+ IDGS YE+N+D +++
Sbjct: 504 K-LSSRPLVISASNRIKLKLKLEKPALLVIDGSVEYEINKDDELI 547
>DD20_MOUSE (Q9JJY4) Probable ATP-dependent RNA helicase DDX20
(DEAD-box protein 20) (DEAD-box protein DP 103)
(Component of gems 3) (Gemin3) (Regulator of
steroidogenic factor-1) (ROSF-1)
Length = 825
Score = 36.2 bits (82), Expect = 0.064
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 2 FTESLIKTRTPPLQLRK-------QHCSNSYTPSSRNTCAIYNMVREKNETPQVLKIAVS 54
++ + T++P Q++K Q + TPS RNT A R K+ P+ L +
Sbjct: 463 YSSPTVATQSPKKQVQKLERAFQSQRTPGNQTPSPRNTSASALSARPKHSKPK-LPVKSH 521
Query: 55 GVTELLRLFSPPQQTSVLSDDIEKQNNDSTVSSVED 90
+L +PPQ++ + +E+Q +S +SVED
Sbjct: 522 SECGVLEKAAPPQESGCPA-QLEEQVKNSVQTSVED 556
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat
protein 3) (TPR repeat protein D)
Length = 2025
Score = 32.3 bits (72), Expect = 0.93
Identities = 39/173 (22%), Positives = 70/173 (39%), Gaps = 25/173 (14%)
Query: 2 FTESLIKTRTPPLQLRKQHCSNSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLR 61
F +IK + PP + KQ CS+ + + +++K + K+A + E LR
Sbjct: 738 FEHKVIKEKVPPRPILKQKCSSLEKLRLKEDKKLKRKIQKK----EAKKLAQERMEEDLR 793
Query: 62 LFSPP------------QQTSVLSDDI---EKQNNDSTVSSVEDVLIIIKSDYDNDYFVT 106
+PP Q+ L D I KQ D S +++ +++K T
Sbjct: 794 ESNPPKNEEQKETVDNVQRCQFLDDRILQCIKQYADKIKSGIQNTAMLLKELLSWKVLST 853
Query: 107 GNFTSSIYTENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIKLLKIEKEVE 159
++T+ + N F + + + R L N ++ F + +L KEVE
Sbjct: 854 EDYTTCFSSRN--FLNEAVDYVIRHLIQENNRVKTRIF----LHVLSELKEVE 900
>UVRA_STRR6 (P63385) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 943
Score = 32.0 bits (71), Expect = 1.2
Identities = 42/176 (23%), Positives = 70/176 (38%), Gaps = 12/176 (6%)
Query: 14 LQLRKQHCSNSYTPSSRNTCAIYNMVREKNETPQVLKIAVSG----VTELLRLFSPPQQT 69
L+L ++ P R + V EK + +++ V G VTE+ L Q
Sbjct: 141 LELPERQRLQILAPVIRKKKGQHKSVIEKVQKDGYVRVRVDGEVYDVTEVPELSKSKQHN 200
Query: 70 SVLSDD---IEKQNNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYTENCIFEDPTIK 126
+ D I++ S+E L I + D T + + +++E+ + P
Sbjct: 201 IDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIID---TMDDSELLFSEH--YACPVCG 255
Query: 127 FSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLRASWKLRTNLKLPWRPL 182
F+ +L R PF C+ L I+ EV++D AS LR PW P+
Sbjct: 256 FTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDTDLVVPDASKTLREGALAPWNPI 311
>UVRA_STRPN (P63384) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 943
Score = 32.0 bits (71), Expect = 1.2
Identities = 42/176 (23%), Positives = 70/176 (38%), Gaps = 12/176 (6%)
Query: 14 LQLRKQHCSNSYTPSSRNTCAIYNMVREKNETPQVLKIAVSG----VTELLRLFSPPQQT 69
L+L ++ P R + V EK + +++ V G VTE+ L Q
Sbjct: 141 LELPERQRLQILAPVIRKKKGQHKSVIEKVQKDGYVRVRVDGEVYDVTEVPELSKSKQHN 200
Query: 70 SVLSDD---IEKQNNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYTENCIFEDPTIK 126
+ D I++ S+E L I + D T + + +++E+ + P
Sbjct: 201 IDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIID---TMDDSELLFSEH--YACPVCG 255
Query: 127 FSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLRASWKLRTNLKLPWRPL 182
F+ +L R PF C+ L I+ EV++D AS LR PW P+
Sbjct: 256 FTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDTDLVVPDASKTLREGALAPWNPI 311
>PC15_HUMAN (Q96QU1) Protocadherin 15 precursor
Length = 1955
Score = 32.0 bits (71), Expect = 1.2
Identities = 28/97 (28%), Positives = 45/97 (45%), Gaps = 10/97 (10%)
Query: 22 SNSYTPSSRNTCAIYNMVREKNETPQVL--KIAVSGVTELLRLFSPPQQTSVLS-DDIEK 78
+N PS NT +Y ++++N P V K + GV+E R+F TSVL +K
Sbjct: 1117 ANLRVPSKSNTAKVYIEIQDENNHPPVFQKKFYIGGVSEDARMF-----TSVLRVKATDK 1171
Query: 79 QNNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYT 115
+ +V + ++ IK + FV +T I T
Sbjct: 1172 DTGNYSVMAYRLIIPPIKEGKEG--FVVETYTGLIKT 1206
>PC15_MOUSE (Q99PJ1) Protocadherin 15 precursor
Length = 1943
Score = 31.6 bits (70), Expect = 1.6
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 22 SNSYTPSSRNTCAIYNMVREKNETPQVL--KIAVSGVTELLRLFSPPQQTSVLSDDIEKQ 79
+N PS NT +Y ++++N+ P V K + GV+E R+F+ + D
Sbjct: 1122 ANLRVPSKSNTAKVYIEIQDENDHPPVFQKKFYIGGVSEDARMFASVLRVKATDRD---- 1177
Query: 80 NNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYT 115
S++ LII + FV +T I T
Sbjct: 1178 --TGNYSAMAYRLIIPPIKEGKEGFVVETYTGLIKT 1211
>CPT7_MESAU (P70687) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII)
(P450-C17) (P450c17) (Steroid 17-alpha-hydroxylase/17,20
lyase)
Length = 511
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 69 TSVLSDDIEKQNNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYTENCIFEDPTIKFS 128
+ +L EK N+DS +SS+ D+LI K++ DN+ G +++ + + I +
Sbjct: 244 SGILEKCKEKFNSDS-ISSLMDLLIQAKTNADNNNTSEGQGSNAFSDMHILATIADIFGA 302
Query: 129 GRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLR 166
G + A L ++ F KI+KE++ + F R
Sbjct: 303 GIETTASVLSWIIAFLLHNPEVKKKIQKEIDQNIGFSR 340
>DMD_MOUSE (P11531) Dystrophin
Length = 3678
Score = 30.8 bits (68), Expect = 2.7
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 23 NSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLR---LFSPPQQTSVLSDDIEKQ 79
N T SS +T ++ R + P +L++ S +E + L SPPQ TS +++ +Q
Sbjct: 3600 NGTTVSSPST----SLQRSDSSQPMLLRVVGSQTSESMGEEDLLSPPQDTSTGLEEVMEQ 3655
Query: 80 NNDSTVSS 87
N+S SS
Sbjct: 3656 LNNSFPSS 3663
>DMD_CHICK (P11533) Dystrophin
Length = 3660
Score = 30.8 bits (68), Expect = 2.7
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 23 NSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLR---LFSPPQQTSVLSDDIEKQ 79
N T SS +T ++ R + P +L++ S +E + L SPPQ TS +++ +Q
Sbjct: 3582 NGTTLSSPST----SLQRSDSSQPMLLRVVGSQTSETMGEDDLLSPPQDTSTGLEEVMEQ 3637
Query: 80 NNDSTVSS 87
N+S SS
Sbjct: 3638 LNNSFPSS 3645
>UVRA_LISMO (Q8Y4F6) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 956
Score = 30.0 bits (66), Expect = 4.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 123 PTIKFSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLRASWKLRTNLKLPWRPL 182
P FS +L R PF C + L + EV+ DT S L +PWRP+
Sbjct: 253 PYCGFSVGELEPRMFSFNSPFGACPTCDGLGTKLEVDVDTVIPDRSMSLNEGAIIPWRPI 312
>HS74_MOUSE (Q61316) Heat shock 70-related protein APG-2
Length = 841
Score = 30.0 bits (66), Expect = 4.6
Identities = 20/72 (27%), Positives = 40/72 (54%), Gaps = 8/72 (11%)
Query: 58 ELLRLFSPPQQTSVLSDDIEKQNNDSTVSSVEDVLIIIKSDYDNDY--FVT----GNFTS 111
E+L L++ + ++ D +EK+ ND+ ++VE+ + ++ +Y FV+ FT
Sbjct: 593 EMLALYTENEGKMIMQDKLEKERNDAK-NAVEEYVYEMRDKLSGEYEKFVSEDDRNTFTL 651
Query: 112 SIY-TENCIFED 122
+ TEN ++ED
Sbjct: 652 KLEDTENWLYED 663
>DMD_CANFA (O97592) Dystrophin
Length = 3680
Score = 30.0 bits (66), Expect = 4.6
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 23 NSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLR---LFSPPQQTSVLSDDIEKQ 79
N T SS +T ++ R + P +L++ S +E + L SPPQ TS +++ +Q
Sbjct: 3602 NGTTVSSPST----SLQRSDSSQPMLLRVVGSQTSESMGEEDLLSPPQDTSTGLEEVMEQ 3657
Query: 80 NNDSTVSS 87
N S SS
Sbjct: 3658 LNHSFPSS 3665
>DMD_HUMAN (P11532) Dystrophin
Length = 3685
Score = 29.6 bits (65), Expect = 6.0
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 23 NSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLR---LFSPPQQTSVLSDDIEKQ 79
N T SS +T ++ R + P +L++ S ++ + L SPPQ TS +++ +Q
Sbjct: 3607 NGTTVSSPST----SLQRSDSSQPMLLRVVGSQTSDSMGEEDLLSPPQDTSTGLEEVMEQ 3662
Query: 80 NNDSTVSS 87
N+S SS
Sbjct: 3663 LNNSFPSS 3670
>ATS1_RAT (Q9WUQ1) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin
and metalloproteinase with thrombospondin motifs 1)
(ADAM-TS 1) (ADAM-TS1)
Length = 967
Score = 29.6 bits (65), Expect = 6.0
Identities = 12/55 (21%), Positives = 27/55 (48%)
Query: 100 DNDYFVTGNFTSSIYTENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIKLLKI 154
D Y + GNFT S ++ ++ +++SG ++ P + +I++L +
Sbjct: 774 DGTYILNGNFTLSTLEQDLTYKGTVLRYSGSSAALERIRSFSPLKEPLTIQVLMV 828
>ATS1_MOUSE (P97857) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin
and metalloproteinase with thrombospondin motifs 1)
(ADAM-TS 1) (ADAM-TS1)
Length = 968
Score = 29.6 bits (65), Expect = 6.0
Identities = 12/55 (21%), Positives = 27/55 (48%)
Query: 100 DNDYFVTGNFTSSIYTENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIKLLKI 154
D Y + GNFT S ++ ++ +++SG ++ P + +I++L +
Sbjct: 775 DGTYILNGNFTLSTLEQDLTYKGTVLRYSGSSAALERIRSFSPLKEPLTIQVLMV 829
>UVRA_BACSU (O34863) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 957
Score = 29.3 bits (64), Expect = 7.9
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 26/131 (19%)
Query: 72 LSDDIEKQNNDSTVSSVEDVLIIIKSDYDNDYFVTGNFTSSIYT---------------- 115
LSDDIE + N V I++K V + S+ T
Sbjct: 188 LSDDIELEKNKKHSIEVVIDRIVVKEG------VAARLSDSLETALRLGEGRVMIDVIGE 241
Query: 116 ENCIFED----PTIKFSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLRASWKL 171
E +F + P FS +L R PF C + L ++ EV++D L
Sbjct: 242 EELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLSL 301
Query: 172 RTNLKLPWRPL 182
+ N PW P+
Sbjct: 302 KENAVAPWTPI 312
>AROG_CANAL (P79023) Phospho-2-dehydro-3-deoxyheptonate aldolase,
tyrosine-inhibited (EC 2.5.1.54)
(Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP
synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate
synthase)
Length = 370
Score = 29.3 bits (64), Expect = 7.9
Identities = 28/122 (22%), Positives = 48/122 (38%), Gaps = 20/122 (16%)
Query: 86 SSVEDVLIIIKSDYDNDYFVTGNFTSSIYTEN-CIFEDPTIKFSGRDLYARNLKLLVPFF 144
+S E + ++IK YD+ + GN I C DP Y + LK
Sbjct: 33 ASAESLDVVIKGRYDSAQILKGNDDRCIVIVGPCSIHDPPQALE----YGKRLK------ 82
Query: 145 DCASIKLLKIEKEVESDTNFLRASWKLRTNLKLPWRPLI-AIDGSTSYELNEDFKIVRHV 203
K+ E++ D + ++ + + W+ LI D S+++N KI R +
Sbjct: 83 --------KLADELKDDLVIIMRAYLEKPRTTVGWKGLINDPDVDNSFDINRGLKISRQL 134
Query: 204 ES 205
S
Sbjct: 135 YS 136
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,024,614
Number of Sequences: 164201
Number of extensions: 1041917
Number of successful extensions: 2375
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2369
Number of HSP's gapped (non-prelim): 18
length of query: 225
length of database: 59,974,054
effective HSP length: 106
effective length of query: 119
effective length of database: 42,568,748
effective search space: 5065681012
effective search space used: 5065681012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC135565.11