BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.2 - phase: 0 /pseudo
(2338 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK 45 0.003
GDA1_WHEAT (P04721) Alpha/beta-gliadin A-I precursor (Prolamin) 44 0.005
ZIPA_SALTY (P55894) Cell division protein zipA 44 0.007
GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (P... 43 0.009
GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin) 42 0.015
GLTA_WHEAT (P10385) Glutenin, low molecular weight subunit precu... 42 0.020
AMEL_MONDO (Q28462) Amelogenin 42 0.020
NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in... 42 0.026
NU62_RAT (P17955) Nuclear pore glycoprotein p62 (62 kDa nucleopo... 41 0.034
NCO6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in... 41 0.034
GDA0_WHEAT (P02863) Alpha/beta-gliadin precursor (Prolamin) 41 0.034
PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associa... 41 0.045
OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein) 41 0.045
GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin) 41 0.045
GDA4_WHEAT (P04724) Alpha/beta-gliadin A-IV precursor (Prolamin) 41 0.045
Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 40 0.058
GDA7_WHEAT (P04727) Alpha/beta-gliadin clone PW8142 precursor (P... 40 0.058
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 40 0.058
HD_HUMAN (P42858) Huntingtin (Huntington's disease protein) (HD ... 40 0.076
Z207_HUMAN (O43670) Zinc finger protein 207 40 0.099
>FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK
Length = 1347
Score = 44.7 bits (104), Expect = 0.003
Identities = 41/109 (37%), Positives = 48/109 (43%), Gaps = 7/109 (6%)
Query: 370 QSMATVAPINAAQLP--PLYPYAQYSQ--HPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQ 425
Q VAP Q P P+ P QY Q P P +Q P QPQ PV Q Q
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQYQ-QPQQPVAPQQQYQQP 812
Query: 426 QPPTQQQQQQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLP 474
Q P QQ Q Q +P P +P LL LL+R + +R P PLP
Sbjct: 813 QQPVTQQPQYQ-QPQQPVVPQPQDTLLHPLLMR-NGDSRPLHKPTTPLP 859
>GDA1_WHEAT (P04721) Alpha/beta-gliadin A-I precursor (Prolamin)
Length = 262
Score = 43.9 bits (102), Expect = 0.005
Identities = 32/74 (43%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 384 PPLYPYAQYSQHPFFPPFYHQYPLPSGQPQV--PVNAIVQQMQQQPPTQQQQQQQARPTF 441
P L P YSQ PF Q P P QPQ P I QQ QQQ QQQQQQQ +
Sbjct: 80 PFLQPQLPYSQPQ---PFRPQQPYPQPQPQYSQPQQPISQQQQQQQQQQQQQQQQQQQII 136
Query: 442 PPIPMLYFELLPTL 455
I L +L+P +
Sbjct: 137 QQI--LQQQLIPCM 148
>ZIPA_SALTY (P55894) Cell division protein zipA
Length = 328
Score = 43.5 bits (101), Expect = 0.007
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 358 ETEVWMVSAGAGQSMATVAPINAAQLPPLYPYAQYSQHPFFPPFYHQYPLPSG--QPQVP 415
E V V+ GQS AP Q QH + PP+ P P+ QPQ P
Sbjct: 65 EVRVHRVNHAPGQSQEHDAP------------RQSPQHQYQPPYASAQPRPAAPPQPQAP 112
Query: 416 VNAIVQQMQQQPPTQQQQQQQARPTFPP 443
+ VQQ Q P QQ Q A P PP
Sbjct: 113 MQQPVQQPVQPAPQPQQVQPSAPPVQPP 140
>GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor
(Prolamin)
Length = 296
Score = 43.1 bits (100), Expect = 0.009
Identities = 27/55 (49%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 384 PPLYPYAQYSQHPFFPPFYHQYPLPSGQPQV--PVNAIVQQMQQQPPTQQQQQQQ 436
PP PY Q PPF Q P P QPQ P I QQ QQ QQQQQQQ
Sbjct: 88 PPQLPYPQP------PPFSPQQPYPQPQPQYPQPQQPISQQQAQQQQQQQQQQQQ 136
Score = 38.1 bits (87), Expect = 0.29
Identities = 36/106 (33%), Positives = 42/106 (38%), Gaps = 31/106 (29%)
Query: 377 PINAAQLPPLYPYAQY----SQHPF-----FP---PFYHQYPLPS--------------- 409
P Q PP PY Q SQ P+ FP PF Q P P
Sbjct: 51 PGQQQQFPPQQPYPQPQPFPSQQPYLQLQPFPQPQPFPPQLPYPQPPPFSPQQPYPQPQP 110
Query: 410 --GQPQVPVNAIVQQMQQQPPTQQQQQQQARPTFPPIPMLYFELLP 453
QPQ P++ Q QQQ QQQQQQQ + I L +L+P
Sbjct: 111 QYPQPQQPISQQQAQQQQQQQQQQQQQQQQQQILQQI--LQQQLIP 154
>GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin)
Length = 307
Score = 42.4 bits (98), Expect = 0.015
Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 370 QSMATVAPINAAQLPPLYPYAQYSQ----HPFFPPFYHQYPLPSGQPQV-----PVNAIV 420
Q + P QLP P Y Q +P PF Q P P QPQ P++
Sbjct: 73 QPYLQLQPFPQPQLPYPQPQLPYPQPQLPYPQPQPFRPQQPYPQSQPQYSQPQQPISQQQ 132
Query: 421 QQMQQQPPTQQQQQQQ 436
QQ QQQ +QQQQQQ
Sbjct: 133 QQQQQQQQQKQQQQQQ 148
>GLTA_WHEAT (P10385) Glutenin, low molecular weight subunit
precursor
Length = 356
Score = 42.0 bits (97), Expect = 0.020
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 377 PINAAQLPPLYP-----YAQYSQHPFF----PPFYHQYPLPSGQPQVPVNAIVQQMQQQP 427
PI+ Q PP ++Q Q P+ PP+ Q P Q Q P QQ QQ P
Sbjct: 76 PISQQQQPPFSQQQQPQFSQQQQPPYSQQQQPPYSQQQQPPFSQQQQP--PFSQQQQQPP 133
Query: 428 PTQQQQQQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPP 470
TQQQQQQQ + F F P + + Q + PP
Sbjct: 134 FTQQQQQQQQQQPFTQQQQPPFSQQPPISQQQQPPFLQQQRPP 176
Score = 38.5 bits (88), Expect = 0.22
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 390 AQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQ----QQARPTFPPIP 445
AQ SQ PPF Q P Q Q P Q QQ P +QQQQQ QQ +P F P
Sbjct: 19 AQISQQQQAPPFSQQQQPPFSQQQQPP---FSQQQQSPFSQQQQQPPFAQQQQPPFSQQP 75
Query: 446 MLYFELLPTLLLRGHCTTRQGKPPP 470
+ + P + Q + PP
Sbjct: 76 PISQQQQPPFSQQQQPQFSQQQQPP 100
Score = 37.0 bits (84), Expect = 0.64
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 377 PINAAQLPPLY-----PYAQYSQHPFF-----PPFYHQYPLPSGQPQVPVNAIVQQMQQQ 426
P + Q PP P++Q Q PF PPF Q P Q Q P++ Q QQ
Sbjct: 29 PFSQQQQPPFSQQQQPPFSQQQQSPFSQQQQQPPFAQQQQPPFSQ-QPPIS----QQQQP 83
Query: 427 PPTQQQQQQQARPTFPP 443
P +QQQQ Q ++ PP
Sbjct: 84 PFSQQQQPQFSQQQQPP 100
>AMEL_MONDO (Q28462) Amelogenin
Length = 202
Score = 42.0 bits (97), Expect = 0.020
Identities = 38/109 (34%), Positives = 46/109 (41%), Gaps = 12/109 (11%)
Query: 377 PINAAQLP-----PLYPYAQYSQHPFFPPFYHQ--YPLPSGQPQVPVNAIVQQMQQQPPT 429
PI AAQ P P+ P QHP P +HQ P P QP P A QQ Q P
Sbjct: 71 PIMAAQQPAPPQQPVMPVP--GQHPMAPTQHHQPNLPQPGQQPYQPQPA--QQPQPHQPI 126
Query: 430 QQ-QQQQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPPRF 477
Q Q Q +P P PM + + + + + PP PLPP F
Sbjct: 127 QPIQPIQPIQPMQPMQPMQPMQPMQPMQPQTPVHAVRPLPPQPPLPPMF 175
>NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in
breast cancer-3 protein) (Cancer-amplified
transcriptional coactivator ASC-2) (Activating signal
cointegrator-2) (ASC-2) (Peroxisome
proliferator-activated receptor-interacting protein) (PP
Length = 2063
Score = 41.6 bits (96), Expect = 0.026
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 384 PPLYPYAQYSQHPF--FPPFYHQYPLPSGQP--QVPVNAIVQQMQQQPPTQQQQQQQARP 439
PP YP Q P PP Q+ P QP Q P + QQ Q PP+Q Q QQQ +
Sbjct: 970 PPGYPSQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQ 1029
Query: 440 TFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPP 475
+ ML + P + ++ PP PL P
Sbjct: 1030 QQQMMMMLMMQQDPKSVRLP--VSQNVHPPRGPLNP 1063
Score = 35.0 bits (79), Expect = 2.5
Identities = 33/124 (26%), Positives = 44/124 (34%), Gaps = 26/124 (20%)
Query: 339 VESSANASKRNGNGHHKKKETEVWMVSAGAGQSMATVAPINAAQLPPLYP---------- 388
V A +G G + M+ G S + +AP +L P P
Sbjct: 159 VRMEAGFPMASGPGIIRMNNPATVMIPPGGNVSSSMMAPGPNPELQPRTPRPASQSDAMD 218
Query: 389 ------YAQYSQHP---FFPPFYHQYPL-------PSGQPQVPVNAIVQQMQQQPPTQQQ 432
+ Q HP PP + P+ P+ PQ+ QQ QQQ QQQ
Sbjct: 219 PLLSGLHIQQQSHPSGSLAPPHHPMQPVSVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQ 278
Query: 433 QQQQ 436
QQQQ
Sbjct: 279 QQQQ 282
>NU62_RAT (P17955) Nuclear pore glycoprotein p62 (62 kDa
nucleoporin)
Length = 525
Score = 41.2 bits (95), Expect = 0.034
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 40 TSVIPTASTDARFAMPTGFPYGLPPFFTPNTA----AGTSGTANSGPIPGANLASIGITL 95
T+ I AST ++ PTGF +G P+T + TSG+A+ G N+ S+G +L
Sbjct: 123 TNAISGASTSSQGTAPTGFVFGSSTTSAPSTGTTGFSFTSGSASQPGASGFNIGSVG-SL 181
Query: 96 TQATATVTEPVMITVPQGTHAGAHRGSTPITGTMEERIEELAKELRREIKANRGSSDT 153
Q TA P T AGA + P T L I A SS T
Sbjct: 182 AQPTALSGSPFTPATLATTTAGA---TQPAAATPTAATTSAGSTLFASIAAAPASSST 236
>NCO6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in
breast cancer-3 protein) (Cancer-amplified
transcriptional coactivator ASC-2) (Activating signal
cointegrator-2) (ASC-2) (Peroxisome
proliferator-activated receptor-interacting protein) (PP
Length = 2067
Score = 41.2 bits (95), Expect = 0.034
Identities = 53/221 (23%), Positives = 80/221 (35%), Gaps = 44/221 (19%)
Query: 299 LKKDYVERMIIAAPNNFSKMVTMGTRLEEAVREGIIVFEKVESSANASKRNG---NGHHK 355
+ ++ ER+ I A +N ++ +G + EG I ++ + + NG +G+
Sbjct: 100 IPREAAERLWILAQSNNQQLRDLGILSVQIEGEGAINLALGQNRSQDVRMNGPVASGNSV 159
Query: 356 KKETEVWMVSA----------------GAGQSMATVAPINAAQLPPLYP----------- 388
+ E M S G S + +AP +L P P
Sbjct: 160 RMEAGFPMASGPGLIRMTSPAAVMTPQGGNMSSSMMAPGPNPELQPRTPRPASQSDAMDP 219
Query: 389 -----YAQYSQHPF--FPPFYHQY-PLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPT 440
+ Q HP PP +H P+P + P N Q QQQ QQQQQQQ +
Sbjct: 220 LLSGLHIQQQSHPSGSLPPAHHSMQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQ 279
Query: 441 FPPIPMLYFELLPTLLLRGHCTTRQG------KPPPDPLPP 475
+ L T L+ H QG P P+PP
Sbjct: 280 QQQQQQQQQQQLQTRPLQQHQQQPQGIRPQFTAPTQVPVPP 320
Score = 39.3 bits (90), Expect = 0.13
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 384 PPLYPYAQYSQHPF--FPPFYHQYPLPSGQP--QVPVNAIVQQMQQQPPTQQQQQQQ 436
PP YP Q P PP Q+ P QP Q P + QQ Q PP+Q Q QQQ
Sbjct: 974 PPGYPTQPVEQRPLPQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQ 1030
>GDA0_WHEAT (P02863) Alpha/beta-gliadin precursor (Prolamin)
Length = 286
Score = 41.2 bits (95), Expect = 0.034
Identities = 29/58 (50%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 382 QLPPL-YPYAQYSQHPFFPPFYHQYPLPSGQPQV--PVNAIVQQMQQQPPTQQQQQQQ 436
QL P P YSQ PF Q P P QPQ P I QQ QQQ QQQQQQQ
Sbjct: 77 QLQPFPQPQLPYSQPQ---PFRPQQPYPQPQPQYSQPQQPISQQQQQQQQQQQQQQQQ 131
Score = 40.0 bits (92), Expect = 0.076
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 385 PLYPYAQYSQHPFFPPFYHQYPLPS-GQPQVPVNAIVQQMQQQPPTQQQQQQ 435
P PY+Q PF P + P P QPQ P++ QQ QQQ QQQQQQ
Sbjct: 84 PQLPYSQ--PQPFRPQQPYPQPQPQYSQPQQPISQQQQQQQQQQQQQQQQQQ 133
>PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated
protein (PC2 glutamine/Q-rich-associated protein)
(TPA-inducible gene-1) (TIG-1) (Activator-recruited
cofactor 105 kDa component) (ARC105) (CTG repeat protein
7a)
Length = 788
Score = 40.8 bits (94), Expect = 0.045
Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 391 QYSQHPFFPPFYHQYPLPSGQPQVPVNAI----VQQMQQQPPTQQQQQQQARPTFPPI-- 444
Q Q +HQ Q Q + I +QQ QQQ QQQQQQQA PPI
Sbjct: 213 QQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQ 272
Query: 445 -PMLY-----FELLPTLLLRGHCTTRQGKPPPDPLPP 475
PM + LP L + H T+ +PPP P P
Sbjct: 273 PPMQQPQPPPSQALPQQLQQMH-HTQHHQPPPQPQQP 308
>OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein)
Length = 2716
Score = 40.8 bits (94), Expect = 0.045
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 383 LPPLYP---YAQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARP 439
LPP +P Y +Y P P+ + PLP G+P QQQP QQQ QQ P
Sbjct: 140 LPPPHPHPAYGRYHADPNMDPYRYGQPLPGGKP---------PQQQQPHPQQQPPQQPGP 190
Query: 440 TFPPIPMLYFELLPTLLLRGHCTT-----RQGKPPPDP 472
P +P +G T + PPP P
Sbjct: 191 GGSPNRPPQQRYIPGQPPQGPTPTLNSLLQSSNPPPPP 228
Score = 34.7 bits (78), Expect = 3.2
Identities = 30/102 (29%), Positives = 36/102 (34%), Gaps = 7/102 (6%)
Query: 376 APINAAQLPPLYPYAQYSQHPFFPPFY--HQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQ 433
AP A PP P+ Q P + H+YP G P P Q QQQ P QQ
Sbjct: 1530 APPRGAAPPPGAPHGPPIQQPAGVAQWDQHRYPPQQGPPPPPQQQQQPQQQQQQPPYQQV 1589
Query: 434 QQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPP 475
P P + ++ P G PP PL P
Sbjct: 1590 AGPPGQQPPQAPPQWAQMNP-----GQTAQSGIAPPGSPLRP 1626
>GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin)
Length = 319
Score = 40.8 bits (94), Expect = 0.045
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 384 PPLYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQ 436
PP PY Q P P+ Q P QPQ P++ Q QQQ QQQQQQQ
Sbjct: 88 PPQLPYPQPQSFPPQQPYPQQQPQYL-QPQQPISQQQAQQQQQQQQQQQQQQQ 139
Score = 40.0 bits (92), Expect = 0.076
Identities = 37/103 (35%), Positives = 41/103 (38%), Gaps = 28/103 (27%)
Query: 377 PINAAQLPPLYPYAQ----YSQHPF-----------FPP---------FYHQYPLPSGQP 412
P Q PP PY Q SQ P+ FPP F Q P P QP
Sbjct: 51 PGQQQQFPPQQPYPQPQPFPSQQPYLQLQPFPQPQPFPPQLPYPQPQSFPPQQPYPQQQP 110
Query: 413 QV--PVNAIVQQMQQQPPTQQQQQQQARPTFPPIPMLYFELLP 453
Q P I QQ QQ QQQQQQQ + I L +L+P
Sbjct: 111 QYLQPQQPISQQQAQQQQQQQQQQQQQQQILQQI--LQQQLIP 151
>GDA4_WHEAT (P04724) Alpha/beta-gliadin A-IV precursor (Prolamin)
Length = 297
Score = 40.8 bits (94), Expect = 0.045
Identities = 27/66 (40%), Positives = 28/66 (41%), Gaps = 1/66 (1%)
Query: 370 QSMATVAPINAAQLPPLYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPT 429
Q + P QLP P Y Q F P YP P Q P I QQ QQQ
Sbjct: 73 QPYMQLQPFPQPQLPYPQPQLPYPQPQPFRP-QQSYPQPQPQYSQPQQPISQQQQQQQQQ 131
Query: 430 QQQQQQ 435
QQQQQQ
Sbjct: 132 QQQQQQ 137
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)
Length = 875
Score = 40.4 bits (93), Expect = 0.058
Identities = 26/61 (42%), Positives = 27/61 (43%), Gaps = 8/61 (13%)
Query: 385 PLYPYAQY--SQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPTFP 442
P YPY QY Q P PP Q P P QP Q QQQP Q QQ +P P
Sbjct: 91 PFYPYGQYWPQQPPQPPPDQPQQPQPPQQPPQ------QPPQQQPQPPQPPQQPPQPPQP 144
Query: 443 P 443
P
Sbjct: 145 P 145
>GDA7_WHEAT (P04727) Alpha/beta-gliadin clone PW8142 precursor
(Prolamin)
Length = 313
Score = 40.4 bits (93), Expect = 0.058
Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 382 QLPPLYPYAQYSQHPFFPPFYHQYPLPSG-----QPQVPVNAIVQQMQQQPPTQQQQQQQ 436
Q P P Y Q FPP Q P P QPQ P++ Q QQQ QQQQQQQ
Sbjct: 80 QPQPFLPQLPYPQPQSFPP---QQPYPQQRPKYLQPQQPISQQQAQQQQQQQQQQQQQQQ 136
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein)
Length = 620
Score = 40.4 bits (93), Expect = 0.058
Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 376 APINAAQLPPLY--PYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQ 433
AP + PP Y P Y+Q P PP Y P P P + PP Q
Sbjct: 405 APPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTYSPPPPAYAQ 464
Query: 434 QQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPP--DPLPPRF 477
PT+ P P Y P+ + PPP PLPP F
Sbjct: 465 PPPPPPTYSPPPPAYSPPPPSPI--------YSPPPPQVQPLPPTF 502
Score = 39.7 bits (91), Expect = 0.099
Identities = 27/91 (29%), Positives = 33/91 (35%), Gaps = 9/91 (9%)
Query: 384 PPLYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPTFPP 443
PP + +A + P P H P P QPQ P PP Q Q PT+ P
Sbjct: 234 PPTHRHAPPTHQP--SPLRHLPPSPRRQPQPPT-------YSPPPPAYAQSPQPSPTYSP 284
Query: 444 IPMLYFELLPTLLLRGHCTTRQGKPPPDPLP 474
P Y P+ + PPP P P
Sbjct: 285 PPPTYSPPPPSPIYSPPPPAYSPSPPPTPTP 315
>HD_HUMAN (P42858) Huntingtin (Huntington's disease protein) (HD
protein)
Length = 3144
Score = 40.0 bits (92), Expect = 0.076
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 421 QQMQQQPPTQQQQQQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPP 475
QQ QQQ QQQQQQQ +P PP P + LP + Q +PPP P PP
Sbjct: 23 QQQQQQQQQQQQQQQQQQPPPPPPPPPPPQ-LPQPPPQAQPLLPQPQPPPPPPPP 76
>Z207_HUMAN (O43670) Zinc finger protein 207
Length = 478
Score = 39.7 bits (91), Expect = 0.099
Identities = 32/93 (34%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
Query: 9 ASLREELAKANDTMTALLAAQEQSATVIPVTTSVIPTASTDARFAMPTGFPYGLPPFFTP 68
AS E A+ AQ Q+A PV T P ST A P P P +T
Sbjct: 271 ASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEP---PKPTFPAYTQ 327
Query: 69 NTAAGTSGTANSGPIPGANLASIGITLTQATAT 101
+TA+ TS T ++ P A++ S TLT +AT
Sbjct: 328 STASTTSTTNSTAAKPAASITSKPATLTTTSAT 360
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.340 0.147 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,396,024
Number of Sequences: 164201
Number of extensions: 10250349
Number of successful extensions: 45652
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 43376
Number of HSP's gapped (non-prelim): 957
length of query: 2338
length of database: 59,974,054
effective HSP length: 127
effective length of query: 2211
effective length of database: 39,120,527
effective search space: 86495485197
effective search space used: 86495485197
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC135504.2