BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.16 - phase: 0 /pseudo
         (343 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3                 32  3.0
TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA)...    31  5.2
YHDP_ECOLI (P46474) Hypothetical protein yhdP precursor                30  6.8
DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7)...    30  6.8

>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3
          Length = 3497

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 40/161 (24%), Positives = 63/161 (38%), Gaps = 25/161 (15%)

Query: 78   NAAAGNDGVRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQC-SEVQKVRFGTH 136
            N  A  D + +  T LRN P    G+  PD +             M C SE      GT 
Sbjct: 2186 NLIAHADSIELSLTELRNGPRISNGKERPDASSA---------ATMSCRSEYNNEPSGTG 2236

Query: 137  MLAEEAD-------DW--W----VSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNE 183
             LA   D       DW  W    + +  VL  DG  V  A+ ++E + R         NE
Sbjct: 2237 ALAGSFDKSVLQISDWLTWEQNMIKIQSVLVDDGDAVRLAIEKQEKVLRELKMKKPQLNE 2296

Query: 184  -IEFLELKHGDMSVTKYAAKFVELAKFYPYYTAEIVEFSKC 223
             +   E+  GD+   +   K ++     P+ +A++ ++ +C
Sbjct: 2297 LVHTAEVLKGDVKRQQLQEKELKQFSLAPHCSADL-DYMRC 2336


>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA)
           (Major surface antigen)
          Length = 1162

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 84  DGVRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCS 126
           +G+R++   L  HP  FKGR   D    WL + +RI+ V Q S
Sbjct: 250 EGMRVM---LFTHPLNFKGRCVRDRLNLWLTDNQRIYNVGQVS 289


>YHDP_ECOLI (P46474) Hypothetical protein yhdP precursor
          Length = 1266

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 9/56 (16%)

Query: 132 RFGTHMLAEEADDWWVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEIEFL 187
           R G   L    D+ W+ +L  +  D     W         RYFPE++ GK+ +++L
Sbjct: 481 RGGFRYLQPANDEPWLGILAGISTDDGSQAW---------RYFPENLMGKDLVDYL 527


>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7)
           (Pol II)
          Length = 1143

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 19/135 (14%)

Query: 102 GRYDPDGTQKWLKEVERIFRVMQCSE--VQKVRFGTHMLAEEADDWWVSLLPVLEQDGAV 159
           G YD   T K +K +    ++ +  E  + +V+ G  +  +    +  + LP+     A 
Sbjct: 717 GEYDSFDTIKGVKGMTSKTKIPERLEKGILRVKHGVFVFKDGTARFDATDLPITHFKPAE 776

Query: 160 VTWAVFRREFLNRYFPEDVRG---KNEIEFLELKHGDMSVTKYAAKFV---------ELA 207
           +  +V +   L   +  D +G   KNE + +ELK  D+ + K  A+++          L 
Sbjct: 777 IGVSVEKLRELG--YERDYKGAELKNENQIVELKPQDVILPKSGAEYLLRVANFIDDLLV 834

Query: 208 KFY---PYYTAEIVE 219
           KFY   P+Y A+ VE
Sbjct: 835 KFYKMEPFYNAKSVE 849


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.355    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,746,409
Number of Sequences: 164201
Number of extensions: 1280148
Number of successful extensions: 6196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6193
Number of HSP's gapped (non-prelim): 6
length of query: 343
length of database: 59,974,054
effective HSP length: 111
effective length of query: 232
effective length of database: 41,747,743
effective search space: 9685476376
effective search space used: 9685476376
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 66 (30.0 bits)