BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.12 - phase: 0
(179 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 65 1e-10
M750_ARATH (P92516) Hypothetical mitochondrial protein AtMg00750... 52 1e-06
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 49 6e-06
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 47 3e-05
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 47 3e-05
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 47 3e-05
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 45 1e-04
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 44 2e-04
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 3e-04
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 39 0.008
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 39 0.008
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 39 0.008
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 38 0.014
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.024
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.024
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 37 0.024
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 37 0.032
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 37 0.032
ZB11_HUMAN (O95625) Zinc finger and BTB domain containing protei... 36 0.054
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 34 0.16
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/149 (28%), Positives = 68/149 (44%), Gaps = 4/149 (2%)
Query: 7 KRGFITPLIKCLGPNETQEVLADVHDG-ICGQHLDVKSLARKVLRAGYYWPTMLKDAEDY 65
K + P+ + E + +L+ +HD I G H + KV R YYW M K ++Y
Sbjct: 877 KVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRH-YYWKNMSKYIKEY 935
Query: 66 VNLCDKCQR-HGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYST 124
V C KCQ+ H P+ +T F +D +GP PK+ +Y V I T
Sbjct: 936 VRKCQKCQKAKTTKHTKTPMTITE-TPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLT 994
Query: 125 KWIEVEPLAKIKAKNVLRFFKRNILARFG 153
K++ P+A AK V + + + ++G
Sbjct: 995 KYLVAIPIANKSAKTVAKAIFESFILKYG 1023
>M750_ARATH (P92516) Hypothetical mitochondrial protein AtMg00750
(ORF119)
Length = 119
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 37 QHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFA 96
QHL K R VL+AG+YWPT KDA +V+ CD CQR G+ + ++ F
Sbjct: 26 QHL--KQWPRFVLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFD 83
Query: 97 WWGI 100
WGI
Sbjct: 84 VWGI 87
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 48.9 bits (115), Expect = 6e-06
Identities = 35/119 (29%), Positives = 54/119 (44%), Gaps = 3/119 (2%)
Query: 26 VLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVE 85
+L ++H+G+ H +K + R V R +YWP M E+ V C KC D H
Sbjct: 1468 LLKELHEGMLAGHFGIKKMWRMVHRK-FYWPQMRVCVENCVRTCAKCLCAND-HSKLTSS 1525
Query: 86 LTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRFF 144
LT +P DL+ G +Y++ I+ TK+ P+ KA+ VL+ F
Sbjct: 1526 LTPYRMTFPLEIVACDLMDVGLSVQGN-RYILTIIDLFTKYGTAVPIPDKKAETVLKAF 1583
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/152 (25%), Positives = 64/152 (41%), Gaps = 19/152 (12%)
Query: 20 PNETQ---EVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQ--- 73
PN+TQ ++ H+ H ++ L +LR + W + K ++YV C CQ
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINK 964
Query: 74 -----RHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIE 128
+G + PP E PW +D + P+++G VV +S I
Sbjct: 965 SRNHKPYGPLQPIPPSE-----RPWESL--SMDFITALPESSGYNALFVVVDRFSKMAIL 1017
Query: 129 VEPLAKIKAKNVLRFFKRNILARFGVPALVIS 160
V I A+ R F + ++A FG P +I+
Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/152 (25%), Positives = 64/152 (41%), Gaps = 19/152 (12%)
Query: 20 PNETQ---EVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQ--- 73
PN+TQ ++ H+ H ++ L +LR + W + K ++YV C CQ
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINK 964
Query: 74 -----RHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIE 128
+G + PP E PW +D + P+++G VV +S I
Sbjct: 965 SRNHKPYGPLQPIPPSE-----RPWESL--SMDFITALPESSGYNALFVVVDRFSKMAIL 1017
Query: 129 VEPLAKIKAKNVLRFFKRNILARFGVPALVIS 160
V I A+ R F + ++A FG P +I+
Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/152 (25%), Positives = 64/152 (41%), Gaps = 19/152 (12%)
Query: 20 PNETQ---EVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQ--- 73
PN+TQ ++ H+ H ++ L +LR + W + K ++YV C CQ
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINK 964
Query: 74 -----RHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIE 128
+G + PP E PW +D + P+++G VV +S I
Sbjct: 965 SRNHKPYGPLQPIPPSE-----RPWESL--SMDFITALPESSGYNALFVVVDRFSKMAIL 1017
Query: 129 VEPLAKIKAKNVLRFFKRNILARFGVPALVIS 160
V I A+ R F + ++A FG P +I+
Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIA 1049
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/140 (27%), Positives = 61/140 (42%), Gaps = 22/140 (15%)
Query: 26 VLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVE 85
VL +H+G H + + +K R+ +W + D E+ V C+ CQ + M P
Sbjct: 786 VLKQLHEG----HPGIVQMKQKA-RSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP-- 838
Query: 86 LTSLVSPWPF--AWW---GIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNV 140
++PWP A W ID GP YL+V ++ TK+ EV+ I A
Sbjct: 839 ----LNPWPVPEAPWKRIHIDFAGPLNGC-----YLLVVVDAKTKYAEVKLTRSISAVTT 889
Query: 141 LRFFKRNILARFGVPALVIS 160
+ + I + G P +IS
Sbjct: 890 IDLLE-EIFSIHGYPETIIS 908
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 44.3 bits (103), Expect = 2e-04
Identities = 29/95 (30%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Query: 53 YYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQ 112
Y+WP + KD + C +C +L P L + PF + ID +GP P + G
Sbjct: 842 YWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGY 901
Query: 113 LKYLVVAINYSTKWIEVEPL------AKIKAKNVL 141
L LVV ++ T ++ + P A +KA N+L
Sbjct: 902 LHVLVV-VDSMTGFVWLYPTKAPSTSATVKALNML 935
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 43.5 bits (101), Expect = 3e-04
Identities = 30/95 (31%), Positives = 44/95 (45%), Gaps = 7/95 (7%)
Query: 53 YYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQ 112
Y+WP + KD + C +C LA P L PF + ID +GP P + G
Sbjct: 844 YWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPSNGY 903
Query: 113 LKYLVVAINYSTKWIEVEPL------AKIKAKNVL 141
L LVV ++ T ++ + P A +KA N+L
Sbjct: 904 LHVLVV-VDSMTGFVWLYPTKAPSTSATVKALNML 937
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 7/95 (7%)
Query: 53 YYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQ 112
Y+WP M KD + C +C + A L PF + ID +GP P + G
Sbjct: 634 YWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGY 693
Query: 113 LKYLVVAINYSTKWIEVEPL------AKIKAKNVL 141
L Y++V ++ T + + P A +K+ NVL
Sbjct: 694 L-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVL 727
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 38.5 bits (88), Expect = 0.008
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 2/135 (1%)
Query: 24 QEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPP 83
+E LA + HL + L + + + P E + C CQ+ P
Sbjct: 692 KEALAMIQQMHAWTHLSNQKLKLLIEKTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVP 751
Query: 84 VELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRF 143
E P +W ID P G KYL+V ++ + W+E P + A V +
Sbjct: 752 -EGKRTRGNRPGVYWEIDFTEVKPHYAGY-KYLLVFVDTFSGWVEAYPTRQETAHMVAKK 809
Query: 144 FKRNILARFGVPALV 158
I RFG+P ++
Sbjct: 810 ILEEIFPRFGLPKVI 824
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 38.5 bits (88), Expect = 0.008
Identities = 32/135 (23%), Positives = 53/135 (38%), Gaps = 2/135 (1%)
Query: 24 QEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPP 83
+E LA + HL + L + + + P E + C CQ+ P
Sbjct: 835 KEALAMIQQMHAWTHLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNAGATRVP 894
Query: 84 VELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRF 143
+ + P +W ID P G KYL+V ++ + W+E P + A V +
Sbjct: 895 AGKRTRGNR-PGVYWEIDFTEVKPHYAGY-KYLLVFVDTFSGWVEAFPTRQETAHIVAKK 952
Query: 144 FKRNILARFGVPALV 158
I RFG+P ++
Sbjct: 953 ILEEIFPRFGLPKVI 967
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 37.7 bits (86), Expect = 0.014
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 53 YYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQ 112
YY + +D C C + A + T + P W ID P G
Sbjct: 874 YYMLNRDRTLKDITETCQACAQVNASKSAVK-QGTRVRGHRPGTHWEIDFTEVKPGLYGY 932
Query: 113 LKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
KYL+V I+ + W+E P K AK V + I RFG+P ++
Sbjct: 933 -KYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 977
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 37.0 bits (84), Expect = 0.024
Identities = 24/65 (36%), Positives = 31/65 (46%), Gaps = 1/65 (1%)
Query: 94 PFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFG 153
P W ID P G KYL+V I+ + WIE P K AK V + I RFG
Sbjct: 909 PGTHWEIDFTEIKPGLYGY-KYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFG 967
Query: 154 VPALV 158
+P ++
Sbjct: 968 MPQVL 972
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 53 YYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQ 112
YY + +D C C + A + T + P W ID P G
Sbjct: 874 YYMLNRDRTLKDITETCKACAQVNASKSAVK-QGTRVRGHRPGTHWEIDFTEVKPGLYGY 932
Query: 113 LKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
KYL+V ++ + W+E P K AK V + I RFG+P ++
Sbjct: 933 -KYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 977
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 37.0 bits (84), Expect = 0.024
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 18 LGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGD 77
L P+ +E + +H HL + L + V R P + + + C C
Sbjct: 804 LTPDRGKEFIKRLHQLT---HLGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACA---- 856
Query: 78 MHLAPPVELTSLVSPW-----------PFAWWGIDLLGPFPKATGQLKYLVVAINYSTKW 126
+T+ V+ + P +W +D P G KYL+V I+ + W
Sbjct: 857 --------MTNAVTTYRETGKRQRGDRPGVYWEVDFTEIKPGRYGN-KYLLVFIDTFSGW 907
Query: 127 IEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
+E P A V + IL RFG+P ++
Sbjct: 908 VEAFPTKTETALIVCKKILEEILPRFGIPKVL 939
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 36.6 bits (83), Expect = 0.032
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 1/65 (1%)
Query: 94 PFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFG 153
P W ID P G KYL+V ++ + W+E P K AK V + I RFG
Sbjct: 914 PGTHWEIDFTEVKPGLYGY-KYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFG 972
Query: 154 VPALV 158
+P ++
Sbjct: 973 MPQVL 977
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 36.6 bits (83), Expect = 0.032
Identities = 31/120 (25%), Positives = 54/120 (44%), Gaps = 6/120 (5%)
Query: 42 KSLARKVLRAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPPVE--LTSLV-SPWPFAWW 98
+S +++R Y + + A D C C + A PVE L S + P W
Sbjct: 135 ESKLTELVRKHYPICGIYRAARDITTRCVACAQVNPR--AAPVEKGLNSRIRGAAPGEHW 192
Query: 99 GIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALV 158
+D A G KYL+V ++ + W+E P + ++ V++ +I+ RFG+P +
Sbjct: 193 EVDFTEMIT-AKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQI 251
>ZB11_HUMAN (O95625) Zinc finger and BTB domain containing protein
11
Length = 1053
Score = 35.8 bits (81), Expect = 0.054
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 3 GTLY------KRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWP 56
GTLY R L L P ++++ H G G H + L Y+W
Sbjct: 45 GTLYYQRRQRHRKTFAELEVVLQPERRRDLIEAAHLGPGGTH-HTRHQTWHYLSKTYWWR 103
Query: 57 TMLKDAEDYVNLCDKCQRHGD 77
+LK +DY+ C KCQ D
Sbjct: 104 GILKQVKDYIKQCSKCQEKLD 124
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 34.3 bits (77), Expect = 0.16
Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 1/65 (1%)
Query: 94 PFAWWGIDLLGPFPKATGQLKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFG 153
P W ID P G KYL+V ++ + W+E P AK V + I RFG
Sbjct: 294 PGTHWEIDFTEVKPGLYGY-KYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFG 352
Query: 154 VPALV 158
+P ++
Sbjct: 353 MPQVL 357
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.143 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,533,280
Number of Sequences: 164201
Number of extensions: 853524
Number of successful extensions: 2165
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2140
Number of HSP's gapped (non-prelim): 29
length of query: 179
length of database: 59,974,054
effective HSP length: 103
effective length of query: 76
effective length of database: 43,061,351
effective search space: 3272662676
effective search space used: 3272662676
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC135504.12