Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135464.1 - phase: 0 /pseudo
         (317 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...   180  5e-45
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    87  5e-17
COAT_SOCMV (P15627) Coat protein                                       37  0.050
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I      36  0.14
GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ...    36  0.14
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre...    35  0.25
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...    35  0.25
VGLM_SEOUR (P28729) M polyprotein precursor [Contains: Glycoprot...    35  0.32
GRP2_NICSY (P27484) Glycine-rich protein 2                             35  0.32
GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17 (...    35  0.32
EBN2_EBV (P12978) EBNA-2 nuclear protein                               35  0.32
COAT_CAMVS (P03542) Coat protein                                       35  0.32
COAT_CAMVD (P03544) Coat protein                                       35  0.32
COAT_CAMVC (P03543) Coat protein                                       34  0.42
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II      34  0.55
RCK2_YEAST (P38623) Serine/threonine-protein kinase RCK2 (EC 2.7...    34  0.55
VGLM_HANTB (P28728) M polyprotein precursor [Contains: Glycoprot...    33  0.72
VGLM_SEOUS (P17880) M polyprotein precursor [Contains: Glycoprot...    33  0.93
COAT_FMVD (P09519) Probable coat protein                               33  0.93
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein     33  1.2

>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score =  180 bits (456), Expect = 5e-45
 Identities = 110/327 (33%), Positives = 184/327 (55%), Gaps = 15/327 (4%)

Query: 3   GSKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSA 62
           G K+++ KF G N F   + +M+ +L QQ   + L  +++ P T+  E+  ++ ++A SA
Sbjct: 3   GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62

Query: 63  IVLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQL 122
           I L L D V+ ++  E TA  +  + ESLYM+K+L ++  LK+QLY+  M E  +    L
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 123 TEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRT 182
             FN ++  LAN+ V +E+EDKA+LLL SLP S+++   TIL+GK  T  L++V +AL  
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTSALLL 181

Query: 183 KELTKFKDMKVDEGSEGLNVTRGRNEHRGKGK-GKSRSKSRSKGFDKSKYK-CFLCHKQG 240
            E  K +    ++G   +   RGR+  R     G+S ++ +SK   KS+ + C+ C++ G
Sbjct: 182 NE--KMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPG 239

Query: 241 HFKKDCPD-KGGDGSPSVQVAEASNEEGYESAGALVVTSWE---------PEKSWVLDSG 290
           HFK+DCP+ + G G  S Q  + +     ++   +V+   E         PE  WV+D+ 
Sbjct: 240 HFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTA 299

Query: 291 CSYHMCPRKEYFETLILKEGGVVRLGN 317
            S+H  P ++ F   +  + G V++GN
Sbjct: 300 ASHHATPVRDLFCRYVAGDFGTVKMGN 326


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
           Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 38/313 (12%)

Query: 4   SKWDIEKFTGSNDFGL*KVKMQAILTQQKCVEALKGEAEMPATLTQEEKREMVDKAKSAI 63
           +K +I+ F G   + + K +++A+L +Q  ++ + G   MP  +    K+     AKS I
Sbjct: 4   AKRNIKPFDGEK-YAIWKFRIRALLAEQDVLKVVDGL--MPNEVDDSWKKAE-RCAKSTI 59

Query: 64  VLCLGDKVLRDVAREATAASMLAKWESLYMTKSLAHRQLLKQQLYSFKMMESKSISEQLT 123
           +  L D  L     + TA  +L   +++Y  KSLA +  L+++L S K+    S+     
Sbjct: 60  IEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFH 119

Query: 124 EFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKDTILYGKEGTATLEEVQAALRTK 183
            F++++ +L      +E+ DK   LL +LP  ++     I    E   TL  V+  L  +
Sbjct: 120 IFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQ 179

Query: 184 ELTKFKDMKVDEGSEGLNVTRGRNEHRGKG----KGKSRSKSRSKGFDKSKYKCFLCHKQ 239
           E+ K K+   D   + +N     N +  K        ++ K   KG  K K KC  C ++
Sbjct: 180 EI-KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGRE 238

Query: 240 GHFKKDC-------PDKGGDGSPSVQVA----------EASNEEGYESAGALVVTSWEPE 282
           GH KKDC        +K  +    VQ A          E +N    ++ G          
Sbjct: 239 GHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCG---------- 288

Query: 283 KSWVLDSGCSYHM 295
             +VLDSG S H+
Sbjct: 289 --FVLDSGASDHL 299


>COAT_SOCMV (P15627) Coat protein
          Length = 441

 Score = 37.4 bits (85), Expect = 0.050
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 201 NVTRGRNEHRGKGKGKSRS--KSRSKGFDKSKYKCFLCHKQGHFKKDCPDK 249
           N  +  N+ + K   K R   K ++    K K +C+LCH++GH+  +CP K
Sbjct: 349 NFWKWNNQRKKKTFRKKRPFRKQQTCPTGKKKCQCWLCHEEGHYANECPKK 399


>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
          Length = 218

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 173 LEEVQAALRTKELTKFKD-MKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKY 231
           LE+ + +  T E +  +D MK   GS     ++  +E + K + + R   R    ++ K+
Sbjct: 24  LEQPKNSSNTNEESSSQDNMKASFGS-----SKRYDERQKKKRSEYRRLRRINQRNRDKF 78

Query: 232 KCFLCHKQGHFKKDCPD 248
            CF C +QGH  +DCP+
Sbjct: 79  -CFACRQQGHIVQDCPE 94


>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains:
           Protease (EC 3.4.23.-)]
          Length = 827

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 5/38 (13%)

Query: 216 KSRSKSRSKGFDKSKYKCFLCHKQGHFKKDC--PDKGG 251
           +S+++S S+   ++   CF C K GHFKKDC  PDK G
Sbjct: 446 QSQNRSMSRNDQRT---CFNCGKPGHFKKDCRAPDKQG 480


>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
           (Pre-mRNA splicing factor SRP75) (SRP001LB)
          Length = 494

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 11/60 (18%)

Query: 181 RTKELTKFKDMKVDEGSEGLNVTRGRNEH----------RGKGKGKSRSKSRSKGFDKSK 230
           ++K  ++ ++ +V+E   G +V+RGR++           R KG  +SRS+SRSK  DK K
Sbjct: 297 KSKSRSRSQERRVEEEKRG-SVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRK 355


>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
           protein)
          Length = 271

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 197 SEGLNVTRGRNEH----RGKGK----GKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPD 248
           SE  +V R R E     R  GK     +   ++ SKG ++S   CF C ++GH  ++CP+
Sbjct: 2   SETEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERST-TCFRCGEEGHMSRECPN 60

Query: 249 KGGDGSPSVQVAEASNEEGYES 270
           +   G+          E G+ S
Sbjct: 61  EARSGAAGAMTCFRCGEAGHMS 82



 Score = 33.1 bits (74), Expect = 0.93
 Identities = 13/39 (33%), Positives = 20/39 (50%)

Query: 213 GKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGG 251
           G G+ R +S ++G       C+ C   GH  +DCP+  G
Sbjct: 122 GYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQG 160



 Score = 32.3 bits (72), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (43%), Gaps = 5/47 (10%)

Query: 205 GRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGG 251
           G   H  +    S     +KGF+     C+ C ++GH  +DCP   G
Sbjct: 76  GEAGHMSRDCPNSAKPGAAKGFE-----CYKCGQEGHLSRDCPSSQG 117



 Score = 32.0 bits (71), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 232 KCFLCHKQGHFKKDCPDKGGDGS 254
           KC+ C + GH  ++CP  G  GS
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGS 219



 Score = 30.8 bits (68), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 233 CFLCHKQGHFKKDCPDKGG 251
           C+ C K GH  ++CP+ GG
Sbjct: 224 CYKCGKPGHISRECPEAGG 242



 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (46%)

Query: 233 CFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYES 270
           CF C + GH  +DCP+    G+          +EG+ S
Sbjct: 72  CFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLS 109


>VGLM_SEOUR (P28729) M polyprotein precursor [Contains: Glycoprotein
            G1; Glycoprotein G2]
          Length = 1134

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 185  LTKFK--DMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHF 242
            LT  K  DM +  G+E + ++RG+N  R  GKG         G   S +KC  CH     
Sbjct: 1003 LTSIKACDMAICYGAESVTLSRGQNTVRITGKG---------GHSGSSFKC--CH----- 1046

Query: 243  KKDCPDKGGDGS-PSVQ----VAEASNEEGY-ESAGALVVTSW-EPEKSWVL 287
             K+C   G   S P +     ++E  NE+ Y + A    VT W +    WV+
Sbjct: 1047 GKECSSTGLQASAPHLDKVNGISELENEKVYDDGAPECGVTCWFKKSGEWVM 1098


>GRP2_NICSY (P27484) Glycine-rich protein 2
          Length = 214

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 19/60 (31%), Positives = 23/60 (37%)

Query: 194 DEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGGDG 253
           D G  G     G + + G G G         G       CF C + GHF +DC   GG G
Sbjct: 120 DGGYGGGGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG 179


>GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17
           (Matrix protein); Core protein p24 (Core antigen); Core
           protein p2; Core protein p7 (Nucleocapsid protein); Core
           protein p1; Core protein p6]
          Length = 504

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 162 TILYGKEGTATLEEVQAALRTKELTKFKDMKVDEG-SEGLNVTRGRNEHRGKGKGKSRSK 220
           TIL      ATLEE+  A +       K   + E  S+  N T      RG  KG+ R K
Sbjct: 337 TILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIK 396

Query: 221 SRSKGFD---------KSKYKCFLCHKQGHFKKDCPDK 249
             + G +           K  C+ C K+GH  KDC ++
Sbjct: 397 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTER 434


>EBN2_EBV (P12978) EBNA-2 nuclear protein
          Length = 487

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 17/34 (50%), Positives = 19/34 (55%)

Query: 192 KVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKG 225
           K    S G +  RGR   RG+GKGKSR K R  G
Sbjct: 335 KTQGQSRGQSRGRGRGRGRGRGKGKSRDKQRKPG 368


>COAT_CAMVS (P03542) Coat protein
          Length = 489

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 5/77 (6%)

Query: 212 KGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDK-GGDGSPSVQVAEASN----EE 266
           K K K  SK +     K   +C++C+ +GH+  +CP++   + +  +Q AE       EE
Sbjct: 393 KPKEKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEE 452

Query: 267 GYESAGALVVTSWEPEK 283
            YE    + +  ++ E+
Sbjct: 453 PYEGVQEVFILEYKEEE 469


>COAT_CAMVD (P03544) Coat protein
          Length = 490

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 5/77 (6%)

Query: 212 KGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDK-GGDGSPSVQVAEASN----EE 266
           K K K  SK +     K   +C++C+ +GH+  +CP++   + +  +Q AE       EE
Sbjct: 392 KPKEKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEE 451

Query: 267 GYESAGALVVTSWEPEK 283
            YE    + +  ++ E+
Sbjct: 452 PYEGVQEVFILEYKEEE 468


>COAT_CAMVC (P03543) Coat protein
          Length = 488

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 212 KGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASN------E 265
           K K K  SK +     K   +C++C+ +GH+  +CP++       + + +A N      E
Sbjct: 391 KPKEKKGSKRKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHI-LQQAENLGLQPVE 449

Query: 266 EGYESAGALVVTSWEPEK 283
           E YE    + +  ++ E+
Sbjct: 450 EPYEGVQEVFILEYKEEE 467


>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
          Length = 1268

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 174 EEVQAALRTKELTKFKDMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYK- 232
           +E    ++  + +K   +K  + S+ ++V +  + +R K K K   +   K    SK K 
Sbjct: 178 DEWMKFIQMHQQSKIVSVKPSKSSQQVDVNKV-DTNRSKKKKKPIPRKPEKSSQDSKKKG 236

Query: 233 ----CFLCHKQGHFKKDC---PDKGGDG 253
               CF C+K+GH+  +C   P  G  G
Sbjct: 237 EIPTCFYCNKKGHYATNCRSNPKTGNQG 264


>RCK2_YEAST (P38623) Serine/threonine-protein kinase RCK2 (EC
           2.7.1.37) (CAM kinase-like protein kinase CLK1)
          Length = 610

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 38/128 (29%), Positives = 58/128 (44%), Gaps = 19/128 (14%)

Query: 106 QLYSFKMMESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLP-KSFEHFKDTIL 164
           QL S  ++  +S+SEQ    + I DD  + + NMEDE         +P KSF   K+ I 
Sbjct: 113 QLSSDPLISDESLSEQSEIISDIQDDSTDDD-NMEDE---------IPEKSFLEQKELIG 162

Query: 165 Y---GKEGTATLEEVQAALRTKE-----LTKFKDMKVDEGSEGLNVTRGRNEHRGKGKGK 216
           Y    K G     +V  A+  K      LTK       +  +  +++    +HR K KGK
Sbjct: 163 YKLINKIGEGAFSKVFRAIPAKNSSHEFLTKNYKAVAIKVIKKADLSSINGDHRKKDKGK 222

Query: 217 SRSKSRSK 224
             +K+ S+
Sbjct: 223 DSTKTSSR 230


>VGLM_HANTB (P28728) M polyprotein precursor [Contains: Glycoprotein
            G1; Glycoprotein G2]
          Length = 1133

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 185  LTKFK--DMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHF 242
            LT  K  DM +  G+E + ++RG+N  +  GKG         G   S +KC  CH     
Sbjct: 1002 LTSIKACDMAICYGAESVTLSRGQNTVKITGKG---------GHSGSSFKC--CH----- 1045

Query: 243  KKDCPDKGGDGS-PSVQ----VAEASNEEGY-ESAGALVVTSW-EPEKSWVL 287
             K+C   G   S P +     ++E  NE+ Y + A    VT W +    WV+
Sbjct: 1046 GKECSSTGLQASAPHLDKVNGISELENEKVYDDGAPECGVTCWFKKSGEWVM 1097


>VGLM_SEOUS (P17880) M polyprotein precursor [Contains: Glycoprotein
            G1; Glycoprotein G2]
          Length = 1133

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 185  LTKFK--DMKVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGHF 242
            LT  K  DM +  G+E + ++RG+N  +  GKG         G   S +KC  CH     
Sbjct: 1002 LTSIKACDMAICYGAESVTLSRGQNTVKITGKG---------GHSGSSFKC--CH----- 1045

Query: 243  KKDCPDKGGDGS-PSVQ----VAEASNEEGY-ESAGALVVTSW-EPEKSWVL 287
             K+C   G   S P +     ++E  NE+ Y + A    +T W +    WV+
Sbjct: 1046 GKECSSTGLQASAPHLDKVNGISELENEKVYDDGAPECGITCWFKKSGEWVM 1097


>COAT_FMVD (P09519) Probable coat protein
          Length = 489

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 215 GKSRSKSRSKGF---DKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGY 268
           GK  SK + + F    + K +C++C ++GH+  +CP++       V++      EGY
Sbjct: 390 GKYFSKKKPEKFCPQGRKKCRCWICTEEGHYANECPNRKSH-QEKVKILIHGMNEGY 445


>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
          Length = 146

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 247 PDKGGDGSPSVQVAEASNEEGYESAGALVVTSW----------EPEKSWVLDSGCSYHMC 296
           P+     S S  VA    E   ++AG +   SW               W+ D+GC+ HMC
Sbjct: 31  PNDKTSRSSSASVAIPDYETQGQTAGQITPKSWLCMLSSTVPATKSSEWIFDTGCTSHMC 90

Query: 297 PRKEYFET 304
             +  F +
Sbjct: 91  HDRSIFSS 98


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,001,798
Number of Sequences: 164201
Number of extensions: 1471402
Number of successful extensions: 5726
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 5512
Number of HSP's gapped (non-prelim): 215
length of query: 317
length of database: 59,974,054
effective HSP length: 110
effective length of query: 207
effective length of database: 41,911,944
effective search space: 8675772408
effective search space used: 8675772408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)


Medicago: description of AC135464.1