BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135463.3 + phase: 0 /pseudo
(924 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 324 6e-88
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 310 9e-84
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 305 5e-82
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 302 3e-81
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 302 3e-81
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 291 7e-78
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 286 2e-76
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 261 8e-69
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 249 3e-65
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 184 7e-46
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 184 9e-46
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 184 9e-46
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 182 4e-45
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 182 5e-45
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 179 3e-44
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 167 9e-41
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 162 5e-39
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 147 1e-34
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 147 1e-34
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 133 2e-30
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 324 bits (831), Expect = 6e-88
Identities = 166/410 (40%), Positives = 254/410 (61%), Gaps = 6/410 (1%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGT-----MRLCIDYRQLNKVTIKNRYP 61
E++ Q++D+L++ +R S SP+ +P+ +V KK R+ IDYR+LN++T+ +R+P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 62 LPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNA 121
+P +D+++ +L N F+ IDL G+HQI++ E + KTA T++GHYEY MPFG+ NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341
Query: 122 PGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKC 181
P F MN I L+K +V++DDI+++S + +EH L +V L + L +L KC
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401
Query: 182 EFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
EF E +F GH+++ GI +P K++A+ ++ P EI++FLGL GYYR+FI F+
Sbjct: 402 EFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFAD 461
Query: 242 LALPLTQLTCKG-KSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLG 300
+A P+T+ K K + + +S+F +LK + +PIL +P + F + DAS + LG
Sbjct: 462 IAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALG 521
Query: 301 VVLMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSLK 360
VL QDG ++Y SR L HE NY T + EL A+V K +RHYL G FE+ SDH+ L
Sbjct: 522 AVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLS 581
Query: 361 YLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSAL 410
+L+ K+ N + RW L ++DF + Y GK N VADALSR L + L
Sbjct: 582 WLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYL 631
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 310 bits (795), Expect = 9e-84
Identities = 167/404 (41%), Positives = 246/404 (60%), Gaps = 10/404 (2%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTM-----RLCIDYRQLNKVTIKNRYP 61
E++ Q++++L++ +R S SP+ +P +V KK R+ IDYR+LN++TI +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280
Query: 62 LPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNA 121
+P +D+++ +L F+ IDL G+HQI++ +E + KTA T+ GHYEY MPFG+ NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340
Query: 122 PGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKC 181
P F MN I L+K +V++DDI+I+S + EH +++V L + L +L KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400
Query: 182 EFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
EF E +F GHI++ GI +P KV A+ + P EIR+FLGL GYYR+FI ++
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460
Query: 242 LALPLTQLTCKGKSFVWDAQ---CESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLG 298
+A P+T +C K D Q +F +LK + +PIL LP E+ FV+ DAS L
Sbjct: 461 IAKPMT--SCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLA 518
Query: 299 LGVVLMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKS 358
LG VL Q+G +++ SR L HE NY + EL A+V K +RHYL G +F + SDH+
Sbjct: 519 LGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQP 578
Query: 359 LKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSR 402
L++L + KE + RW L +Y F ++Y GK N VADALSR
Sbjct: 579 LRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 305 bits (780), Expect = 5e-82
Identities = 182/565 (32%), Positives = 294/565 (51%), Gaps = 24/565 (4%)
Query: 8 LKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPLPRIDD 67
+ ++ L +R S + PV+ V KK+GT+R+ +DY+ LNK N YPLP I+
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 68 LMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVFME 127
L+ ++ G+ +F+K+DL+S YH I+V+ D K A R G +EY VMP+G++ AP F
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQY 547
Query: 128 YMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWLSE 187
++N I + VV ++DDILI+S++E EH H+K VL LK L +KCEF S+
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 188 VSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLT 247
V F G+ IS G +D V QW+ PK+ E+R FLG Y R+FI S+L PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 248 QLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVVLMQ-- 305
L K + W + +KQ L + P+L + ++ DAS + +G VL Q
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 306 -DGKV--VAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGS--RFEVFSDHKSL- 359
D K V Y S + + NY D E+ A++ LK WRHYL + F++ +DH++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 360 -KYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEFDLL 418
+ + + N R RW L+D++F +NY PG AN +ADALSR + D
Sbjct: 788 GRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNS 847
Query: 419 EQFRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVD 478
F + + I +DF N + D KL++L+ + + + ++
Sbjct: 848 INF---------------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK 892
Query: 479 DQGVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQ 538
D ++ + +I +P++ +L + I+++ H+ I P + + + + F W G+++ + +
Sbjct: 893 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
Query: 539 FVYACLTCLKSKVEHQKPAELLTPL 563
+V C TC +K + KP L P+
Sbjct: 953 YVQNCHTCQINKSRNHKPYGPLQPI 977
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 302 bits (773), Expect = 3e-81
Identities = 181/565 (32%), Positives = 294/565 (52%), Gaps = 24/565 (4%)
Query: 8 LKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPLPRIDD 67
+ ++ L +R S + PV+ V KK+GT+R+ +DY+ LNK N YPLP I+
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 68 LMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVFME 127
L+ ++ G+ +F+K+DL+S YH I+V+ D K A R G +EY VMP+G++ AP F
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQY 547
Query: 128 YMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWLSE 187
++N I + VV ++D+ILI+S++E EH H+K VL LK L +KCEF S+
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 188 VSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLT 247
V F G+ IS G +D V QW+ PK+ E+R FLG Y R+FI S+L PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 248 QLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVVLMQ-- 305
L K + W + +KQ L + P+L + ++ DAS + +G VL Q
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 306 -DGKV--VAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGS--RFEVFSDHKSL- 359
D K V Y S + + NY D E+ A++ LK WRHYL + F++ +DH++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 360 -KYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEFDLL 418
+ + + N R RW L+D++F +NY PG AN +ADALSR + D
Sbjct: 788 GRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNS 847
Query: 419 EQFRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVD 478
F + + I +DF N + D KL++L+ + + + ++
Sbjct: 848 INF---------------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK 892
Query: 479 DQGVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQ 538
D ++ + +I +P++ +L + I+++ H+ I P + + + + F W G+++ + +
Sbjct: 893 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
Query: 539 FVYACLTCLKSKVEHQKPAELLTPL 563
+V C TC +K + KP L P+
Sbjct: 953 YVQNCHTCQINKSRNHKPYGPLQPI 977
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 302 bits (773), Expect = 3e-81
Identities = 181/565 (32%), Positives = 294/565 (52%), Gaps = 24/565 (4%)
Query: 8 LKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPLPRIDD 67
+ ++ L +R S + PV+ V KK+GT+R+ +DY+ LNK N YPLP I+
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 68 LMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVFME 127
L+ ++ G+ +F+K+DL+S YH I+V+ D K A R G +EY VMP+G++ AP F
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQY 547
Query: 128 YMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWLSE 187
++N I + VV ++D+ILI+S++E EH H+K VL LK L +KCEF S+
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 188 VSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLT 247
V F G+ IS G +D V QW+ PK+ E+R FLG Y R+FI S+L PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 248 QLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVVLMQ-- 305
L K + W + +KQ L + P+L + ++ DAS + +G VL Q
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 306 -DGKV--VAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGS--RFEVFSDHKSL- 359
D K V Y S + + NY D E+ A++ LK WRHYL + F++ +DH++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 360 -KYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEFDLL 418
+ + + N R RW L+D++F +NY PG AN +ADALSR + D
Sbjct: 788 GRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNS 847
Query: 419 EQFRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQEVDVKLVDLMVAGNGTKDSDFKVD 478
F + + I +DF N + D KL++L+ + + + ++
Sbjct: 848 INF---------------VNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLK 892
Query: 479 DQGVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATKMYHDLKKLFWWSGLKRDVAQ 538
D ++ + +I +P++ +L + I+++ H+ I P + + + + F W G+++ + +
Sbjct: 893 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 952
Query: 539 FVYACLTCLKSKVEHQKPAELLTPL 563
+V C TC +K + KP L P+
Sbjct: 953 YVQNCHTCQINKSRNHKPYGPLQPI 977
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 291 bits (744), Expect = 7e-78
Identities = 183/594 (30%), Positives = 306/594 (50%), Gaps = 40/594 (6%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGTMRLCIDYRQLNKVTIKNRYPLPRID 66
E++K ++ +L++K +R S SPW +PV+LVKKKDG++R+CIDYR++NKV N +PLP I+
Sbjct: 957 EIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016
Query: 67 DLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVFM 126
+ L G +++ D+ +G+ QI + ++ + TA +E+ V+PFG+ +P +F
Sbjct: 1017 ATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQ 1076
Query: 127 EYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWLS 186
M I L V++DD+LI S+ E+H +K L +++ + + SKC
Sbjct: 1077 GTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKK 1136
Query: 187 EVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPL 246
EV + GH ++ G+ K D + Q+ P +V E++SFLGL GYYR+FI F+++A L
Sbjct: 1137 EVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
Query: 247 TQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILP------KPEEPFVVYFDASKLGLG 300
T L +++W+ + E +F ELK+ + P+L P K + PF++Y DAS+ G+G
Sbjct: 1197 TSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIG 1256
Query: 301 VVLMQDG-----KVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSD 355
VL Q+G +A+AS+ L E Y DLE A++ L+ ++ +YG+ VF+D
Sbjct: 1257 AVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTD 1316
Query: 356 HKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSAL---MV 412
HK L L L R RW + ++D + Y GKAN VADALSR + L
Sbjct: 1317 HKPLISLLKGSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQT 1376
Query: 413 KEFDLLEQFRDLSLVCELTPQSVQLGMLKINNDFLNSIREAQ--------------EVDV 458
KE + L ++ S L LK ++ + A E ++
Sbjct: 1377 KELTSIVNAIQTELP-DILDSSCWLERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESEI 1435
Query: 459 KLVDLMVAGNGTKDSDFKVDDQGVLRFRGRICIPDNDELKKLILEESHKSSLSIRPEATK 518
L + G K+++ + + V+ ++++ +L+E H+ L+ K
Sbjct: 1436 SLEYYKIVGGVLKNTEIEEQSRSVV----------PEKIRTPLLKELHEGMLAGHFGIKK 1485
Query: 519 MYHDLKKLFWWSGLKRDVAQFVYACLTCLKSKVEHQKPAELLTPLDVPAGVEVV 572
M+ + + F+W ++ V V C CL + +H K LTP + +E+V
Sbjct: 1486 MWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSKLTSSLTPYRMTFPLEIV 1538
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 286 bits (732), Expect = 2e-76
Identities = 158/421 (37%), Positives = 245/421 (57%), Gaps = 21/421 (4%)
Query: 3 NVCAELKKQLEDLLDKKFVRPSASPWGAPVLLVKKK-----DGTMRLCIDYRQLNKVTIK 57
N+ E+++Q+++LL +RPS SP+ +P+ +V KK + R+ +D+++LN VTI
Sbjct: 134 NMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIP 193
Query: 58 NRYPLPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFG 117
+ YP+P I+ + L A F+ +DL SG+HQI +K+ D+ KTA T G YE+ +PFG
Sbjct: 194 DTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFG 253
Query: 118 VTNAPGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAK 177
+ NAP +F ++ I ++ K V+IDDI+++S + H +L++VL L + L
Sbjct: 254 LKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVN 313
Query: 178 LSKCEFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIE 237
L K F ++V F G+I++ GI DP KV A+S+ P SV E++ FLG+ YYR+FI+
Sbjct: 314 LEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQ 373
Query: 238 GFSKLALPLTQLT-----------CKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEE 286
++K+A PLT LT D SFN+LK L ++ IL P +
Sbjct: 374 DYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTK 433
Query: 287 PFVVYFDASKLGLGVVLMQD----GKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWR 342
PF + DAS +G VL QD + +AY SR L E+NY T + E+ A++ L R
Sbjct: 434 PFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLR 493
Query: 343 HYLYGS-RFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALS 401
YLYG+ +V++DH+ L + + N + +RW +++Y+ L Y PGK+NVVADALS
Sbjct: 494 AYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALS 553
Query: 402 R 402
R
Sbjct: 554 R 554
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 261 bits (666), Expect = 8e-69
Identities = 144/419 (34%), Positives = 236/419 (55%), Gaps = 21/419 (5%)
Query: 8 LKKQLEDLLDKKFVRPSASPWGAPVLLVKKK------DGTMRLCIDYRQLNKVTIKNRYP 61
+ +++ LL +RPS SP+ +P +V KK + RL ID+R+LN+ TI +RYP
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 62 LPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNA 121
+P I ++ L A F+ +DL+SGYHQI + + D +KT+ G YE+ +PFG+ NA
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 122 PGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKC 181
+F ++ + + K V++DD++I+S E +H H+ VL L + + K
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 182 EFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
F+ V + G I+S G DP KV A+ ++ P V ++RSFLGLA YYR FI+ F+
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 242 LALPLTQLTCKGKS------------FVWDAQCESSFNELKQRLPTNPILI-LPKPEEPF 288
+A P+T + KG++ ++ ++F L+ L + +++ P ++PF
Sbjct: 437 IARPITDI-LKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPF 495
Query: 289 VVYFDASKLGLGVVLMQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGS 348
+ DAS G+G VL Q+G+ + SR L+ E+NY T++ EL A+V L +++LYGS
Sbjct: 496 DLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGS 555
Query: 349 R-FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLH 406
R +F+DH+ L + + N + +RW + ++ + Y PGK N VADALSR+ L+
Sbjct: 556 REINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLN 614
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 249 bits (635), Expect = 3e-65
Identities = 147/409 (35%), Positives = 215/409 (51%), Gaps = 10/409 (2%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKDGT------MRLCIDYRQLNKVTIKNRY 60
E++ Q++ L+ K V PS S + +P+LLV KK RL IDYRQ+NK + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388
Query: 61 PLPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTN 120
PLPRIDD++DQL A FS +DL SG+HQI++ + T+ T G Y + +PFG+
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKI 448
Query: 121 APGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSK 180
AP F M F +++DD+++ +E+ +L V +E L K
Sbjct: 449 APNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEK 508
Query: 181 CEFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFS 240
C F++ EV+F GH + GI D K D + + P R F+ YYRRFI+ F+
Sbjct: 509 CSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFA 568
Query: 241 KLALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLG 300
+ +T+L K F W +C+ +F LK +L +L P + F + DASK G
Sbjct: 569 DYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACG 628
Query: 301 VVLMQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDH 356
VL Q+ VAYASR E N T + ELAA+ + +R Y+YG F V +DH
Sbjct: 629 AVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDH 688
Query: 357 KSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTL 405
+ L YLF + + R L++Y+F + Y GK N VADALSR T+
Sbjct: 689 RPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITI 737
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 184 bits (468), Expect = 7e-46
Identities = 123/416 (29%), Positives = 208/416 (49%), Gaps = 22/416 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLV----KKKDGTMRLCIDYRQLNKVTIKNRYPL 62
E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+ +NK T+ + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNL 320
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G +FS D +SG+ Q+ + E TA GHYE+ V+PFG+ AP
Sbjct: 321 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAP 380
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
+F +M+ F + KF V++DDIL++S EE+H H+ ++L + + K +
Sbjct: 381 SIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 439
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
+ +++F G I ++ ++++ +T + +++ FLG+ Y +I ++
Sbjct: 440 LFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQ 499
Query: 242 LALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGV 301
+ PL + + W + ++K+ L P L P PEE ++ DAS G
Sbjct: 500 IRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGG 559
Query: 302 VL----MQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVF 353
+L + +G + YAS + EKNY ++D E AV+ +K + YL F +
Sbjct: 560 MLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIR 619
Query: 354 SDHK------SLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
+D+ +L Y D K R RW L Y F + + G N AD LSR+
Sbjct: 620 TDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 184 bits (467), Expect = 9e-46
Identities = 123/416 (29%), Positives = 208/416 (49%), Gaps = 22/416 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLV----KKKDGTMRLCIDYRQLNKVTIKNRYPL 62
E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNL 320
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G +FS D +SG+ Q+ + E TA GHYE+ V+PFG+ AP
Sbjct: 321 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAP 380
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
+F +M+ F + KF V++DDIL++S EE+H H+ ++L + + K +
Sbjct: 381 SIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 439
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
+ +++F G I ++ ++++ +T + +++ FLG+ Y +I ++
Sbjct: 440 LFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQ 499
Query: 242 LALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGV 301
+ PL + + W + ++K+ L P L P PEE ++ DAS G
Sbjct: 500 IRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGG 559
Query: 302 VL----MQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVF 353
+L + +G + YAS + E+NY ++D E AV+ +K + YL F +
Sbjct: 560 MLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIR 619
Query: 354 SDHK------SLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
+D+ +L Y D K R RW L Y F + + G N AD LSR+
Sbjct: 620 TDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 184 bits (467), Expect = 9e-46
Identities = 123/416 (29%), Positives = 208/416 (49%), Gaps = 22/416 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLV----KKKDGTMRLCIDYRQLNKVTIKNRYPL 62
E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y L
Sbjct: 261 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNL 320
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G +FS D +SG+ Q+ + E TA GHYE+ V+PFG+ AP
Sbjct: 321 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAP 380
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
+F +M+ F + KF V++DDIL++S EE+H H+ ++L + + K +
Sbjct: 381 SIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 439
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
+ +++F G I ++ ++++ +T + +++ FLG+ Y +I ++
Sbjct: 440 LFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQ 499
Query: 242 LALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGV 301
+ PL + + W + ++K+ L P L P PEE ++ DAS G
Sbjct: 500 IRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGG 559
Query: 302 VL----MQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVF 353
+L + +G + YAS + E+NY ++D E AV+ +K + YL F +
Sbjct: 560 MLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIR 619
Query: 354 SDHK------SLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
+D+ +L Y D K R RW L Y F + + G N AD LSR+
Sbjct: 620 TDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 673
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 182 bits (462), Expect = 4e-45
Identities = 122/416 (29%), Positives = 207/416 (49%), Gaps = 22/416 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLV----KKKDGTMRLCIDYRQLNKVTIKNRYPL 62
E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+ +NK T+ + Y
Sbjct: 256 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNP 315
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G +FS D +SG+ Q+ + E TA GHYE+ V+PFG+ AP
Sbjct: 316 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAP 375
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
+F +M+ F + KF V++DDIL++S EE+H H+ ++L + + K +
Sbjct: 376 SIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 434
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
+ +++F G I ++ ++++ +T + +++ FLG+ Y +I ++
Sbjct: 435 LFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQ 494
Query: 242 LALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGV 301
+ PL + + W + ++K+ L P L P PEE ++ DAS G
Sbjct: 495 IRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGG 554
Query: 302 VL----MQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVF 353
+L + +G + YAS + EKNY ++D E AV+ +K + YL F +
Sbjct: 555 MLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIR 614
Query: 354 SDHK------SLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
+D+ +L Y D K R RW L Y F + + G N AD LSR+
Sbjct: 615 TDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 668
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 182 bits (461), Expect = 5e-45
Identities = 119/409 (29%), Positives = 210/409 (51%), Gaps = 19/409 (4%)
Query: 10 KQLEDLLDKKFVRPSASPWGAPVLLVK----KKDGTMRLCIDYRQLNKVTIKNRYPLPRI 65
KQ+++LLD + PS S +P LV+ ++ G R+ ++Y+ +N+ TI + + LP +
Sbjct: 257 KQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNM 316
Query: 66 DDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAPGVF 125
+L+ L G ++FS D +SG+ Q+ + +E + TA GH+++KV+PFG+ AP +F
Sbjct: 317 QELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIF 376
Query: 126 MEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCEFWL 185
+M + DKF +V++DDI+++S +E +H H+ VL ++++ + K +
Sbjct: 377 QRHMQTALNG-ADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFK 435
Query: 186 SEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSKLAL 244
+++F G I ++ + ++ + + ++ FLG+ Y +I +++
Sbjct: 436 EKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRK 495
Query: 245 PLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGVVLM 304
PL K ++ W ++K+ L + P L LPKPE+ ++ DAS G VL
Sbjct: 496 PLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLK 555
Query: 305 Q---DG--KVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSL 359
DG + Y+S + EKNY ++D EL AV V+ + YL RF V +D+K+
Sbjct: 556 ARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNF 615
Query: 360 KYLF------DQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSR 402
Y D K+ R RW Y F + + G NV+AD L+R
Sbjct: 616 TYFLRINLKGDSKQ--GRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 179 bits (454), Expect = 3e-44
Identities = 119/416 (28%), Positives = 205/416 (48%), Gaps = 22/416 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKKKD----GTMRLCIDYRQLNKVTIKNRYPL 62
E KQ+++LLD K ++PS SP AP LV + G R+ ++Y+ +NK T+ + Y L
Sbjct: 262 EFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNL 321
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G +FS D +SG+ Q+ + E TA GHYE+ V+PFG+ AP
Sbjct: 322 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAP 381
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
+F +M+ F + KF V++DDI+++S EE+H H+ ++L + + K +
Sbjct: 382 SIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQ 440
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSK 241
+ +++F G I ++ ++++ +T + +++ FLG+ Y +I ++
Sbjct: 441 LFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQ 500
Query: 242 LALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLGV 301
+ PL + + W + ++K+ L P L P PEE ++ DAS G
Sbjct: 501 MRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGG 560
Query: 302 VL----MQDGK----VVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVF 353
+L + +G + Y S + E+NY ++D E AV+ +K + YL F +
Sbjct: 561 MLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIR 620
Query: 354 SDHK------SLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
+D+ +L Y D K R RW L Y F + + G N AD LSR+
Sbjct: 621 TDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSRE 674
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 167 bits (424), Expect = 9e-41
Identities = 113/414 (27%), Positives = 208/414 (49%), Gaps = 16/414 (3%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVK----KKDGTMRLCIDYRQLNKVTIKNRYPL 62
E +Q+++LL+ K ++PS S +P LV+ ++ G R+ ++Y+ +NK T + + L
Sbjct: 243 EFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNL 302
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P D+L+ + G ++S D +SG Q+ + E TA GHY++ V+PFG+ AP
Sbjct: 303 PNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAP 362
Query: 123 GVFME-YMNRIFHAYLDKFVVVFIDDILIYSRT-EEEHA*HLKIVL*VLKEKKLYAKLSK 180
+F + Y N + Y K+ V++DDIL++S T +EH H+ +L ++ + K
Sbjct: 363 SIFPKTYANSHSNQY-SKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKK 421
Query: 181 CEFWLSEVSFPGHIISGSGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGF 239
+ + +++F G I ++ + ++ + + +++ FLG+ Y +I
Sbjct: 422 AQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKL 481
Query: 240 SKLALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGL 299
+ + PL + ++ W+ ++K+ L + P L P+P + V+ DAS+
Sbjct: 482 ASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFW 541
Query: 300 GVVLM----QDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSD 355
G +L + YAS + E+NY +++ EL AV+ V+K + YL SRF + +D
Sbjct: 542 GGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTD 601
Query: 356 HKSLKYLFDQKELNMRQR----RWLELLKDYDFGLNYHPGKANVVADALSRKTL 405
+K+ + + R++ RW L YDF + + G NV AD L TL
Sbjct: 602 NKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFLQENTL 655
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 162 bits (409), Expect = 5e-39
Identities = 122/425 (28%), Positives = 204/425 (47%), Gaps = 35/425 (8%)
Query: 8 LKKQLEDLLDKKFVRPSASPWGAPVLLV-----------KKKDGTMRLCIDYRQLNKVTI 56
+ +Q+ LL K +RPS S + +V K+K G R+ +Y+ LN+ T
Sbjct: 1418 MTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTE 1477
Query: 57 KNRYPLPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPF 116
++Y LP I+ ++ ++ + ++SK DL+SG+ Q+ +++E + TA YE+ VMPF
Sbjct: 1478 SDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPF 1537
Query: 117 GVTNAPGVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYA 176
G+ NAP +F M+ +F +KF+ V+IDDIL++S T E+H+ HL +L + KE L
Sbjct: 1538 GLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLIL 1596
Query: 177 KLSKCEFWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPKSVTE--IRSFLGLAGYYRR 234
+K + E+ F G + + I + P + + + K T +RS+LG+ Y R
Sbjct: 1597 SPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARN 1656
Query: 235 FIEGFSKLALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDA 294
+I+ KL PL Q + + ++K+++ P L LP + ++ D
Sbjct: 1657 YIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDG 1716
Query: 295 SKLGLGVVL---------MQDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVL-KIWRHY 344
G G V ++ AYAS + T D E+ A + L K +Y
Sbjct: 1717 CMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKS---TIDAEIQAAIHGLDKFKIYY 1773
Query: 345 LYGSRFEVFSDHKSLKYLFDQKELNMRQR-RWLELLKDYDFGL------NYHPGKANVVA 397
L + SD +++ +++ N R RWL D+ GL + GK N +A
Sbjct: 1774 LDKKELIIRSDCEAIIKFYNKTNENKPSRVRWL-TFSDFLTGLGITVTFEHIDGKHNGLA 1832
Query: 398 DALSR 402
DALSR
Sbjct: 1833 DALSR 1837
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 147 bits (371), Expect = 1e-34
Identities = 68/128 (53%), Positives = 93/128 (72%), Gaps = 3/128 (2%)
Query: 41 TMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKT 100
++R+CIDYR L KVTIKN+YP+PR+DDL D+L A F+K+DLRSGY Q+++ D KT
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64
Query: 101 ASRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFIDDIL---IYSRTEEE 157
TRYG +E++VMPFG+TNA F MN + + YLD FVVV++DD++ IYS + E
Sbjct: 65 TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124
Query: 158 HA*HLKIV 165
H HL++V
Sbjct: 125 HIKHLRVV 132
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 147 bits (371), Expect = 1e-34
Identities = 116/418 (27%), Positives = 207/418 (48%), Gaps = 27/418 (6%)
Query: 9 KKQLEDLLDKKFVR---PSASPWGAPVLLVKKKDGTM---RLCIDYRQLNKVTIKNRYPL 62
+KQ+++LLD K ++ P+ A ++ + R+ +Y++LN + + +
Sbjct: 1200 EKQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNI 1259
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTASRTRYGHYEYKVMPFGVTNAP 122
P +++ + AN+FSK DL++G+H +K+KD+ T G Y + V PFG+ NAP
Sbjct: 1260 PHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAP 1319
Query: 123 GVFMEYMNRIFHAYLDKFVVVFIDDILIYSRTEEEHA*HLKIVL*VLKEKKLYAKLSKCE 182
F +M F KF +++IDDILI S E+EH HLKI +KE K +
Sbjct: 1320 CAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSK 1377
Query: 183 FWLSEVSFPGHIISGSGIAVDPSKVDAVSQWETPK--SVTEIRSFLGLAGYYRRFIEGFS 240
+L EV + G I I++ P VD + +++ K ++ ++++LGL Y R +I+ S
Sbjct: 1378 MFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLS 1437
Query: 241 KLALPLTQLTCKGKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDASKLGLG 300
KL PL + T K +++ + + ++++ + L PK + ++ DAS+ G G
Sbjct: 1438 KLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWG 1497
Query: 301 VVLM---------QDGKVVAYASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFE 351
VL+ K+ YAS +K + + D E+ A+ L ++ YL F
Sbjct: 1498 AVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYEIEAINEALNKFQIYL-DKDFT 1555
Query: 352 VFSDHKSLKYLFDQKELNMRQR-RWLE----LLKD-YDFGLNYHPGKANVVADALSRK 403
+ +D +++ ++ R + RW++ LLKD Y + G N + + LSR+
Sbjct: 1556 IRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSRE 1613
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 133 bits (334), Expect = 2e-30
Identities = 100/335 (29%), Positives = 171/335 (50%), Gaps = 19/335 (5%)
Query: 7 ELKKQLEDLLDKKFVRPSASPWGAPVLLVKK----KDGTMRLCIDYRQLNKVTIKNRYPL 62
E K++ EDLL K +R S SP AP V+ K G R+ I+Y+++N+ TI + Y L
Sbjct: 218 EFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKL 277
Query: 63 PRIDDLMDQLVGANVFSKIDLRSGYHQIKVKDEDMQKTA-SRTRYGHYEYKVMPFGVTNA 121
PR D +++++ G+ FS +D +SGY+Q+++ + TA S HYE+ V+ FG+ A
Sbjct: 278 PRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQA 337
Query: 122 PGVFMEYMNRIFHAYLDKFVVVFIDDILIYSR-TEEEHA*HLKIVL*VLKEKKLYAKLSK 180
P ++ +M++ L+ + +IDDILI+++ ++E+H ++IVL +KEK + K
Sbjct: 338 PSIYQRFMDQSLKG-LEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKK 396
Query: 181 CEFWLSEVSFPGHIISGSG-IAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEG 238
+ E+ + G I G+G I + P + + Q+ + + +I+ FLG Y EG
Sbjct: 397 SKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINYIAN--EG 454
Query: 239 FSK-LALPLTQLTCK---GKSFVWDAQCESSFNELKQRLPTNPILILPKPEEPFVVYFDA 294
F K LAL L K + WD +K ++ + P L ++ +V DA
Sbjct: 455 FFKNLALERKHLQKKISVKNPWKWDTIDTKMVQSIKGKIQSLPKLYNASIQDFLIVETDA 514
Query: 295 SKLGLGVVLMQDGKVVAYASRLLRIHEKNYPTHDL 329
S+ L + + + + + E PT DL
Sbjct: 515 SQHSWSGCL----RALPKGKQKIGLDEFGIPTADL 545
Score = 36.2 bits (82), Expect = 0.41
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 312 YASRLLRIHEKNYPTHDLELAAVVLVLKIWRHYLYGSRFEVFSDHKSL----KYLFDQKE 367
Y S E YP +LE+ A V VL+ WR L +RF + +D K +Y
Sbjct: 590 YVSGTFTDTETRYPIAELEVLAGVKVLEKWRIDLLQTRFLLRTDSKYFAGFCRYNIKTDY 649
Query: 368 LNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRK 403
N R RW L+ Y + + N AD L+R+
Sbjct: 650 RNGRLIRWQLRLQAYQPYVELIKSENNPFADTLTRE 685
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.341 0.151 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,228,540
Number of Sequences: 164201
Number of extensions: 4094320
Number of successful extensions: 13013
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 12680
Number of HSP's gapped (non-prelim): 184
length of query: 924
length of database: 59,974,054
effective HSP length: 120
effective length of query: 804
effective length of database: 40,269,934
effective search space: 32377026936
effective search space used: 32377026936
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 71 (32.0 bits)
Medicago: description of AC135463.3