BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135461.10 + phase: 0 
         (425 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YG3H_YEAST (P53285) Hypothetical 54.5 kDa protein in CBF2-SKN1 i...    52  3e-06
TRME_UREPA (Q9PRC7) Probable tRNA modification GTPase trmE             35  0.28
ZCC2_HUMAN (Q7Z2W4) Zinc finger CCCH type antiviral protein 1 (Z...    31  6.9

>YG3H_YEAST (P53285) Hypothetical 54.5 kDa protein in CBF2-SKN1
           intergenic region
          Length = 467

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 52/217 (23%), Positives = 82/217 (36%), Gaps = 41/217 (18%)

Query: 129 PTVYFHPDEKYMPSSVSWFFKNGAILYTAGNA--------KGKAIDYHGTNLPGGGY--- 177
           P ++ + +EKY P+ V  F K   +   +G               +Y+   L  G +   
Sbjct: 92  PLLHLYSEEKYWPADVKDFVKRFQLRDHSGEKIINEHLRDLSDLQEYYSVELENGTWGRV 151

Query: 178 -NDGAFWIDLPTDEDARSNLKKGNIESAELYVHVKPAL------GGAFTDIAMWVFCPFN 230
            ++G +   L   +     L     E    ++   PA+      G  + D   + F PFN
Sbjct: 152 SSEGTYMTSLDDFDKGPDWLLGEQPEYGTGHIKKAPAVLFVVDKGNGWVDAFWFYFYPFN 211

Query: 231 -GPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEF 289
            GP  +            G HVGDWEH  +R   + GE   ++ S H GG       +E 
Sbjct: 212 WGPYIMG-------SGPWGNHVGDWEHSLVRF--YKGEPQYLWMSAHGGGSAYKFEAIEK 262

Query: 290 IKE-------------NKPIVYSSRHGHASYPHAGTY 313
           IK               KP+++S+R  HA Y   G +
Sbjct: 263 IKRLRRVDGKLTNEVIKKPLIFSARGTHAHYASVGQH 299


>TRME_UREPA (Q9PRC7) Probable tRNA modification GTPase trmE
          Length = 438

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 38  VRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQ 97
           +  +R    +  E  + + TIK KK +F++W T   D   +   V + TF     F  E 
Sbjct: 16  IHIIRVSGPKAFEIINKISTIKIKKETFKIWYTILKDDNQILDEVLINTFVAPKTFTGED 75

Query: 98  VVDVVC 103
           +V++ C
Sbjct: 76  LVEINC 81


>ZCC2_HUMAN (Q7Z2W4) Zinc finger CCCH type antiviral protein 1 (Zinc
           finger CCCH type domain containing protein 2) (PRO1677)
          Length = 902

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 92  YFDSEQVVDVVCLKNLDSLLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNG 151
           Y  S   V+ +C  N DS LH      + H     YG  +YF  D  Y   +  +  KN 
Sbjct: 787 YATSRAYVESICSNNFDSFLH------ETHE--NKYGKGIYFAKDAIYSHKNCPYDAKN- 837

Query: 152 AILYTAGNAKGKAID 166
            +++ A    GK I+
Sbjct: 838 VVMFVAQVLVGKFIE 852


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,259,316
Number of Sequences: 164201
Number of extensions: 2561668
Number of successful extensions: 5180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5177
Number of HSP's gapped (non-prelim): 3
length of query: 425
length of database: 59,974,054
effective HSP length: 113
effective length of query: 312
effective length of database: 41,419,341
effective search space: 12922834392
effective search space used: 12922834392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)