BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135396.1 - phase: 0 /pseudo
(1436 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 611 e-174
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 558 e-158
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 184 2e-45
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 172 5e-42
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 140 2e-32
YME4_YEAST (Q04711) Transposon Ty1 protein B 139 4e-32
YMU0_YEAST (Q04670) Transposon Ty1 protein B 136 5e-31
YMD9_YEAST (Q03434) Transposon Ty1 protein B 134 2e-30
YJZ9_YEAST (P47100) Transposon Ty1 protein B 131 2e-29
YJZ7_YEAST (P47098) Transposon Ty1 protein B 131 2e-29
YMT5_YEAST (Q04214) Transposon Ty1 protein B 130 2e-29
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 130 3e-29
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 101 2e-20
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 82 1e-14
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 51 3e-05
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 49 8e-05
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 46 8e-04
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 41 0.027
FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.2... 39 0.13
RRN7_SCHPO (Q9UST5) RNA polymerase I specific transcription init... 36 0.66
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 611 bits (1575), Expect = e-174
Identities = 443/1460 (30%), Positives = 696/1460 (47%), Gaps = 182/1460 (12%)
Query: 5 RLNGANYFR-WSQSVQLYIRGRGKIGYITGDKKQPDKVGADYDTWDAENSMVMTWLVNSL 63
+ NG N F W + ++ + +G + D K+PD + A+ W + + + L
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAE--DWADLDERAASAIRLHL 67
Query: 64 TEEIGANYLCYATAKDLWENVSQMYSDLGNQSQIYELTLQLGEIRQAEDSVTKYFGCLKR 123
++++ N + TA+ +W + +Y +++Y L QL + +E +
Sbjct: 68 SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLY-LKKQLYALHMSEGT---------N 117
Query: 124 IWQDLDLFNEYEWKSPEDCKHYQKMVDVSRVFKFLAGLNVEFDEVRGRILGRNPIPPI-- 181
L++FN + LA L V+ +E IL N +P
Sbjct: 118 FLSHLNVFNG--------------------LITQLANLGVKIEEEDKAILLLNSLPSSYD 157
Query: 182 --------GEVFAEVRREESRRQVMLGKKKAAVPPPVEGSALAVPQVNHKSFRNPRGGDK 233
G+ E++ S +L +K P +G AL R+ +
Sbjct: 158 NLATTILHGKTTIELKDVTS---ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGR 214
Query: 234 THLVCDYCGRNRHTQETCFKLHGRPNNSKAGKFGDRPMPTTSNAASSPFTKEQMDHLLKL 293
+ R++ C+ N ++ G F R P ++ D+ +
Sbjct: 215 SGARGKSKNRSKSRVRNCY------NCNQPGHF-KRDCPNPRKGKGETSGQKNDDNTAAM 267
Query: 294 LKFNSSPNTPIGTVAQTGKDSWALSVQNHSNPWIIDSGASEHMTNCSHLFSSYFPSSGSE 353
++ N + V ++ + + + W++D+ AS H T LF Y
Sbjct: 268 VQNNDN------VVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGT 321
Query: 354 KVKIADGSYSSIAGKGNIKISEQI----TLQSVLHVPKFACNLLSVHKLSEDSNCSVLFC 409
VK+ + SYS IAG G+I I + L+ V HVP NL+S L D S
Sbjct: 322 -VKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESY--- 377
Query: 410 RSTCVFQDQNSGKTIGTAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWHKRLG 469
F +Q T G+ G+ G + +S + LWHKR+G
Sbjct: 378 -----FANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEIS--VDLWHKRMG 430
Query: 470 HPSFSYLKHLFPE--FSKEISSSQFHCDACHLAKDHRVSFNSRGYSASKPFYLIHSDVWG 527
H S L+ L + S ++ CD C K HRVSF + L++SDV G
Sbjct: 431 HMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCG 490
Query: 528 PSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSEVEQRFQDFFNMIKNQFHTTIGILRSD 587
P +I+++ K+FVTFIDD +R WVY+++ K +V Q FQ F +++ + + LRSD
Sbjct: 491 PMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSD 550
Query: 588 NGTEYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLW 647
NG EY ++ + ++GI H+ T TPQ NG+AER NR ++E R+++ +PK W
Sbjct: 551 NGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFW 610
Query: 648 GNALLTACHLINRMPSRVLQYETPVQVLQNNFPTSRIITNIPLKVFGCLCYVYIPNIFRS 707
G A+ TAC+LINR PS L +E P +V T++ ++ LKVFGC + ++P R+
Sbjct: 611 GEAVQTACYLINRSPSVPLAFEIPERVW-----TNKEVSYSHLKVFGCRAFAHVPKEQRT 665
Query: 708 KLDPKAEKCVFLGYASNKKGYKCFNPVTKKFFESMDVHFVEDQPFFRENSLQGESQSSNE 767
KLD K+ C+F+GY + GY+ ++PV KK S DV FRE+ ++ + S +
Sbjct: 666 KLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV-------VFRESEVRTAADMSEK 718
Query: 768 EDNFWEILPVLDDIVTNDHLDAKITEPRNPNLELLEHMVFETGGEEGETLIKNPELRVYV 827
N ++ + VT T + E V E G + GE + + +L
Sbjct: 719 VKN-----GIIPNFVTIPSTSNNPTSAESTTDE-----VSEQGEQPGEVIEQGEQL---- 764
Query: 828 RKKFHKDGTNPIVFPAEVQSDSPSEGPTDNPSSSSSGNSSHSSNDLPDLSFPDINLPIAV 887
+G + P + G H
Sbjct: 765 -----DEGVEEVEHPTQ-------------------GEEQHQ------------------ 782
Query: 888 RKNIPDLNIPIAERKRTRT-CTKHPMSNYLSYDKLSHSHKAYVSRISNLFVPRTIQEALG 946
P+ +R R ++P + Y+ IS+ P +++E L
Sbjct: 783 ---------PLRRSERPRVESRRYPSTEYVL--------------ISDDREPESLKEVLS 819
Query: 947 DPNWKL---AVKEEMNALNKNNTWCITDLPYDKKAVGCKWVFTVKCKADGSVERYKARLV 1003
P A++EEM +L KN T+ + +LP K+ + CKWVF +K D + RYKARLV
Sbjct: 820 HPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLV 879
Query: 1004 AKGFTQTHGIDYQETFAPVAKINSIRILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
KGF Q GID+ E F+PV K+ SIR +LSLA + + + Q DVK AFL+G+L EE+YM
Sbjct: 880 VKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYME 939
Query: 1064 LPPGFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHSRE 1123
P GFE + VC+L KSLYGLKQ+PR W+ +F S +K + ++ +D ++FK E
Sbjct: 940 QPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSE 999
Query: 1124 GKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKLKYFLGMEFARSKEG--IF 1181
IL++YVDD+++ G D G I+ LK L FD+KDLG + LGM+ R + ++
Sbjct: 1000 NNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLW 1059
Query: 1182 LNQRKYILDLLTETGMTGCKAAETPMDPNVKLK------SVAEDEIIDRERYQRLAGRLI 1235
L+Q KYI +L M K TP+ ++KL +V E + + Y G L+
Sbjct: 1060 LSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLM 1119
Query: 1236 Y-LSHTRPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMFRNRGHIQVEAY 1294
Y + TRPDIA AV V+S+F+ PG H+EAV ILRYL+GT G L F I ++ Y
Sbjct: 1120 YAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGY 1178
Query: 1295 TDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEFRSVAHGFCEVLWIK 1354
TDAD AG+I++R+S++GY G ++W+SK Q VA S+ EAE+ + E++W+K
Sbjct: 1179 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1238
Query: 1355 KFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSGEICMSYI 1414
+F+QEL + VYCD+++AI ++ N + H RTKH++V H+I+E +D + + I
Sbjct: 1239 RFLQELGL-HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKI 1297
Query: 1415 PTKSQVADVLTKSLPKRQFD 1434
T AD+LTK +P+ +F+
Sbjct: 1298 STNENPADMLTKVVPRNKFE 1317
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 558 bits (1438), Expect = e-158
Identities = 393/1248 (31%), Positives = 622/1248 (49%), Gaps = 116/1248 (9%)
Query: 229 RGGDKTHLVCDYCGRNRHTQETCFKLHGRPNNSKAGKFGDRPMPTTSNAASSPFTKEQMD 288
+G K + C +CGR H ++ CF NN K ++ + T ++ + KE +
Sbjct: 223 KGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKN--KENEKQVQTATSHGIAFMVKEVNN 280
Query: 289 HLLKLLKFNSSPNTPIGTVAQTGKDSWALSVQNHSNPWIIDSGASEHMTNCSHLFSSYFP 348
SV ++ +++DSGAS+H+ N L++
Sbjct: 281 ----------------------------TSVMDNCG-FVLDSGASDHLINDESLYTDSVE 311
Query: 349 SSGSEKVKIADGS---YSSIAGKGNIKISEQITLQSVLHVPKFACNLLSVHKLSEDSNCS 405
K+ +A Y++ G ++ +ITL+ VL + A NL+SV +L E + S
Sbjct: 312 VVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQE-AGMS 370
Query: 406 VLFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWH 465
+ F +S +N + + +N + P+ N + + N LWH
Sbjct: 371 IEFDKSGVTIS-KNGLMVVKNSGMLNNV------PVINFQAYSINAKH----KNNFRLWH 419
Query: 466 KRLGHPSFSYL-----KHLFPEFS--KEISSSQFHCDACHLAKDHRVSFNSRGYSA--SK 516
+R GH S L K++F + S + S C+ C K R+ F +
Sbjct: 420 ERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKR 479
Query: 517 PFYLIHSDVWGPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSEVEQRFQDFFNMIKNQ 576
P +++HSDV GP TL K +FV F+D T C YL++ KS+V FQDF +
Sbjct: 480 PLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAH 539
Query: 577 FHTTIGILRSDNGTEYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAI 636
F+ + L DNG EY + + F V GI + T TPQ NG++ER R + E R +
Sbjct: 540 FNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTM 599
Query: 637 MFSMNVPKYLWGNALLTACHLINRMPSRVL--QYETPVQVLQNNFPTSRIITNIPLKVFG 694
+ + K WG A+LTA +LINR+PSR L +TP ++ N P + L+VFG
Sbjct: 600 VSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLK-----HLRVFG 654
Query: 695 CLCYVYIPNIFRSKLDPKAEKCVFLGYASNKKGYKCFNPVTKKFFESMDVHFVEDQPFFR 754
YV+I N + K D K+ K +F+GY N G+K ++ V +KF + DV V++
Sbjct: 655 ATVYVHIKNK-QGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDV-VVDETNMVN 710
Query: 755 ENSLQGES-----QSSNEEDNFWEILPVLDDIVTNDHLDAKITEPRNPNLELLEHMVFET 809
+++ E+ +E NF ND TE N + E +++ F
Sbjct: 711 SRAVKFETVFLKDSKESENKNF-----------PNDSRKIIQTEFPNESKEC-DNIQFLK 758
Query: 810 GGEEGETLIKNPELRVYVRKKFHKDGT--NPIVFPAEVQ-------SDSPSEGPTDNPSS 860
+E E + R ++ +F + + I F + + ++S D+ +
Sbjct: 759 DSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNE 818
Query: 861 SS-SGNSSHSSNDLPDLSFPDINLPIAVRKNIPDLNIPIAERKRTRTCTKHPMSNYLSYD 919
S SGN + S +I + + + I I R+ R TK +SY+
Sbjct: 819 SKGSGNPNESRESETAEHLKEIGIDNPTKND----GIEIINRRSERLKTKPQ----ISYN 870
Query: 920 KLSHSHKAYVSRISNLF--VPRTIQEAL---GDPNWKLAVKEEMNALNKNNTWCITDLPY 974
+ +S V +F VP + E +W+ A+ E+NA NNTW IT P
Sbjct: 871 EEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPE 930
Query: 975 DKKAVGCKWVFTVKCKADGSVERYKARLVAKGFTQTHGIDYQETFAPVAKINSIRILLSL 1034
+K V +WVF+VK G+ RYKARLVA+GFTQ + IDY+ETFAPVA+I+S R +LSL
Sbjct: 931 NKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSL 990
Query: 1035 AVNFNWTLHQYDVKNAFLNGELHEEVYMRLPPGFEDKLGRGKVCRLKKSLYGLKQSPRAW 1094
+ +N +HQ DVK AFLNG L EE+YMRLP G VC+L K++YGLKQ+ R W
Sbjct: 991 VIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCW 1048
Query: 1095 FERFGSVVKGHGFTQSQADHTMFF--KHSREGKIAILIVYVDDIIMTGDDIGEISDLKRR 1152
FE F +K F S D ++ K + I +L+ YVDD+++ D+ +++ KR
Sbjct: 1049 FEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLL-YVDDVVIATGDMTRMNNFKRY 1107
Query: 1153 LEAEFDIKDLGKLKYFLGMEFARSKEGIFLNQRKYILDLLTETGMTGCKAAETPMDPNVK 1212
L +F + DL ++K+F+G+ ++ I+L+Q Y+ +L++ M C A TP+ +
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKIN 1167
Query: 1213 LKSVAEDEIIDRERYQRLAGRLIYLS-HTRPDIAFAVSVISQFMHAPGPAHFEAVFRILR 1271
+ + DE + + L G L+Y+ TRPD+ AV+++S++ ++ + R+LR
Sbjct: 1168 YELLNSDEDCNTP-CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLR 1226
Query: 1272 YLKGTPGKGLMFRNRGHIQ--VEAYTDADWAGNINDRRSTSGYC-TFVGGNLVTWRSKKQ 1328
YLKGT L+F+ + + Y D+DWAG+ DR+ST+GY NL+ W +K+Q
Sbjct: 1227 YLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQ 1286
Query: 1329 NVVARSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHD 1388
N VA SS EAE+ ++ E LW+K + + I P+K+Y DN+ ISIA+NP H
Sbjct: 1287 NSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHK 1346
Query: 1389 RTKHVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQFDDM 1436
R KH+++ HF +E++ + IC+ YIPT++Q+AD+ TK LP +F ++
Sbjct: 1347 RAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVEL 1394
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 184 bits (467), Expect = 2e-45
Identities = 91/224 (40%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
Query: 1129 LIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKLKYFLGMEFARSKEGIFLNQRKYI 1188
L++YVDDI++TG ++ L +L + F +KDLG + YFLG++ G+FL+Q KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1189 LDLLTETGMTGCKAAETPMDPNVKLKSVAEDEIIDRERYQRLAGRLIYLSHTRPDIAFAV 1248
+L GM CK TP+ + SV+ + D ++ + G L YL+ TRPDI++AV
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 1249 SVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMFRNRGHIQVEAYTDADWAGNINDRRS 1308
+++ Q MH P A F+ + R+LRY+KGT GL + V+A+ D+DWAG + RRS
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 1309 TSGYCTFVGGNLVTWRSKKQNVVARSSAEAEFRSVAHGFCEVLW 1352
T+G+CTF+G N+++W +K+Q V+RSS E E+R++A E+ W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 172 bits (437), Expect = 5e-42
Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 4/308 (1%)
Query: 1046 DVKNAFLNGELHEEVYMRLPPGFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGH 1105
DV AFLN + E +Y++ PPGF ++ V L +YGLKQ+P W E + +K
Sbjct: 2 DVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKI 61
Query: 1106 GFTQSQADHTMFFKHSREGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKL 1165
GF + + +H ++F+ + +G I I VYVDD+++ +K+ L + +KDLGK+
Sbjct: 62 GFCRHEGEHGLYFRSTSDGPIYIG-VYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1166 KYFLGMEFARSKEG-IFLNQRKYILDLLTETGMTGCKAAETPMDPNVKLKSVAEDEIIDR 1224
FLG+ +S G I L+ + YI +E+ + K +TP+ + L + D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1225 ERYQRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMF 1283
YQ + G+L++ ++T RPDI++ VS++S+F+ P H E+ R+LRYL T L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1284 RNRGHIQVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKK-QNVVARSSAEAEFRS 1342
R+ + + Y DA + ST GY T + G VTW SKK + V+ S EAE+ +
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1343 VAHGFCEV 1350
+ E+
Sbjct: 301 ASETVMEI 308
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 140 bits (354), Expect = 2e-32
Identities = 124/456 (27%), Positives = 205/456 (44%), Gaps = 31/456 (6%)
Query: 998 YKARLVAKGFTQTHGIDYQETFAPVAKINSIRILLSLAVNFNWTLHQYDVKNAFLNGELH 1057
YKAR+V +G TQ+ Y N I+I L +A N N + D+ +AFL +L
Sbjct: 1337 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395
Query: 1058 EEVYMRLPPGFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMF 1117
EE+Y+ P R V +L K+LYGLKQSP+ W + + G G + ++
Sbjct: 1396 EEIYIPHPHD------RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY 1449
Query: 1118 FKHSREGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKL------KYFLGM 1171
E K ++ VYVDD ++ + + + +L++ F++K G L LGM
Sbjct: 1450 ---QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGM 1506
Query: 1172 EFARSKE--------GIFLNQ--RKYILDLLTETGMTGCKAAETPMDPNVKLKSVAEDEI 1221
+ +K F+N+ +KY +L + + +DP + ++E+E
Sbjct: 1507 DLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEF 1566
Query: 1222 IDRE-RYQRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGK 1279
+ Q+L G L Y+ H R DI FAV +++ ++ P F +++I++YL
Sbjct: 1567 RQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDI 1626
Query: 1280 GLMFRN--RGHIQVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAE 1337
G+ + +V A TDA G+ D +S G + G N+ S K SS E
Sbjct: 1627 GIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTE 1685
Query: 1338 AEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDK 1397
AE ++ G+ + +K ++EL + + D+K AI + + K +
Sbjct: 1686 AELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKT 1745
Query: 1398 HFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
IKEKI I + I K +AD+LTK + F
Sbjct: 1746 EIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDF 1781
Score = 94.4 bits (233), Expect = 2e-18
Identities = 142/605 (23%), Positives = 236/605 (38%), Gaps = 69/605 (11%)
Query: 319 VQNHSNPWIIDSGASEHMTNCSHLFSSYFPSSGSEKV-KIADGSYSSIAGKGNIKISEQI 377
V N IID+G+ ++TN L +Y S+ S + I S S+ G G IKI
Sbjct: 405 VYNSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGH 464
Query: 378 TLQS-----VLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREING 432
+VP+ ++S + L++ + VL + T + KT + +NG
Sbjct: 465 NNTDNKCLLTYYVPEEESTIISCYDLAKKTKM-VLSRKYTRLGNKIIKIKT----KIVNG 519
Query: 433 LYYFD-----ETPLGNTAMFGSSRTSPP---LVSNKIMLW--HKRLGHPSFSYL----KH 478
+ + E P ++ + TS P L I L HKR+GH + KH
Sbjct: 520 VIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKH 579
Query: 479 LFPEFSKEI--SSSQFHCDACHLAK----DHRVSFNSRGYSASKPFYLIHSDVWGPSKIK 532
E S ++ ++F C C ++K +H + + +P D++GP
Sbjct: 580 NHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSS 639
Query: 533 TLSRKKWFVTFIDDHTRVCWV--YLMEKKSEVEQRFQDFFNMIKNQFHTTIGILRSDNGT 590
K++ + +D++TR C + + + + + ++ QF + + SD GT
Sbjct: 640 NADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGT 699
Query: 591 EYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNA 650
E+ N + + ++ GI H T NG AER R ++ ++ N+ W A
Sbjct: 700 EFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYA 759
Query: 651 LLTACHLINRMPSRVLQYETPVQVLQNNFPTSRIITNIPLKVFGCLCYVYIPNIFRSKLD 710
+ +A ++ N + + + P++ + T R+++ +P G I N KL
Sbjct: 760 VTSATNIRNYLEHKSTG-KLPLKAISRQPVTVRLMSFLPFGEKG-----IIWNHNHKKLK 813
Query: 711 PKAEKCVFLGYASNKKGYKCFNPVTKKFFES---------MDVHFVEDQPFFRENSLQGE 761
P + L N GYK F P K S MD Q S Q
Sbjct: 814 PSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNI--NKSHQFS 871
Query: 762 SQSSNEEDNFWEILPVLDDIVTNDHLDAKITEPRNPNLELLEHMVFETGGEEGETLIKNP 821
S + +EED + VTN + E N + LE + E EE + N
Sbjct: 872 SDNDDEEDQI--------ETVTNLCEALENYEDDNKPITRLEDLFTE---EELSQIDSNA 920
Query: 822 ELRVYVRKKFHKDGTNPIVFPAEVQSDSPSEGPTDNPSSSSSGNSSHSSNDLPDLSFPDI 881
+ Y + +G VF SD G D S S+ N+S S++ LS D
Sbjct: 921 K---YPSPSNNLEGDLDYVF-----SDVEESGDYDVESELSTTNNSISTDKNKILSNKDF 972
Query: 882 NLPIA 886
N +A
Sbjct: 973 NSELA 977
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 139 bits (351), Expect = 4e-32
Identities = 140/522 (26%), Positives = 245/522 (46%), Gaps = 69/522 (13%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K NTW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMNTWD-TDKYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARG-- 879
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 880 ---DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 936
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RLKKSLYGLKQS W+E S + + + FK+S
Sbjct: 937 PPPHLGMNDKL-----IRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS 991
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEFA 1174
+ + ++VDD+I+ D+ + L+ ++D K +LG +++Y LG+E
Sbjct: 992 Q----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1047
Query: 1175 RSKEGIFLNQRKYILDLLTETGMT-GCKAAETPMDPNVKLKS--------VAEDEI-IDR 1224
QR + L E +T P++P + S + +DE+ ID
Sbjct: 1048 --------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDE 1099
Query: 1225 ERY-------QRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGT 1276
+ Y Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T
Sbjct: 1100 DEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDT 1159
Query: 1277 PGKGLMFRNRGHIQVE----AYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVA 1332
K L++ + + A +DA + GN +S G + G ++ +S K ++
Sbjct: 1160 RDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTC 1218
Query: 1333 RSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAIS-IAHNPVLHDRTK 1391
S+ EAE +++ + + +QEL P + D+K+ IS I N R +
Sbjct: 1219 TSTTEAEIHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNEEKFRNR 1277
Query: 1392 HVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1278 FFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Score = 103 bits (256), Expect = 4e-21
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 31/349 (8%)
Query: 327 IIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADGSYSSIA--GKGNIKISEQITLQS--- 381
++DSGAS + +H S +S + + + D +I G+++ Q ++
Sbjct: 32 LLDSGASRTLIRSAHHIHS---ASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIK 88
Query: 382 VLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPL 441
VLH P A +LLS+++L+ + C + V + ++ G + + Y+ + L
Sbjct: 89 VLHTPNIAYDLLSLNELAA---VDITACFTKNVLE-RSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 442 --GNTAM--FGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKH--------LFPEFSKEISS 489
N ++ + TS H+ L H + +++ F E + SS
Sbjct: 145 LPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 490 S-QFHCDACHLAKD--HRVSFNSR--GYSASKPFYLIHSDVWGPSKIKTLSRKKWFVTFI 544
+ + C C + K HR SR ++ +PF +H+D++GP S +F++F
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 545 DDHTRVCWVYLMEKKSE--VEQRFQDFFNMIKNQFHTTIGILRSDNGTEYFNKYLSTFLV 602
D+ T+ WVY + + E + F IKNQF ++ +++ D G+EY N+ L FL
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 603 TNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNAL 651
NGI T + +G+AER NR LL+ R + +P +LW +A+
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAI 373
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 136 bits (342), Expect = 5e-31
Identities = 136/515 (26%), Positives = 242/515 (46%), Gaps = 55/515 (10%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K TW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARG-- 879
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ P + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 880 ---DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 936
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RLKKSLYGLKQS W+E S + + + FK+S
Sbjct: 937 PPPHLGMNDKL-----IRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS 991
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEFA 1174
+ + ++VDD+I+ D+ + L+ ++D K +LG +++Y LG+E
Sbjct: 992 Q----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1047
Query: 1175 RS-----KEGIFLNQRKYILDLLTETGMTGCKAAETPMDPNV-----KLKSVAEDEIIDR 1224
K G+ + + I L G K + P P + +L+ +D +
Sbjct: 1048 YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS-APGQPGLYIDQQELELEEDDYKMKV 1106
Query: 1225 ERYQRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMF 1283
Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T K L++
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW 1166
Query: 1284 RNRGHI----QVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAE 1339
+ ++ +DA + GN +S G + G ++ +S K ++ S+ EAE
Sbjct: 1167 HKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 1340 FRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAIS-IAHNPVLHDRTKHVEVDKH 1398
+++ + + +QEL P + D+K+ IS I N R +
Sbjct: 1226 IHAISESVPLLNNLSHLVQELN-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1284
Query: 1399 FIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1285 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Score = 103 bits (256), Expect = 4e-21
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 31/349 (8%)
Query: 327 IIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADGSYSSIA--GKGNIKISEQITLQS--- 381
++DSGAS + +H S +S + + + D +I G+++ Q ++
Sbjct: 32 LLDSGASRTLIRSAHHIHS---ASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIK 88
Query: 382 VLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPL 441
VLH P A +LLS+++L+ + C + V + ++ G + + Y+ + L
Sbjct: 89 VLHTPNIAYDLLSLNELAA---VDITACFTKNVLE-RSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 442 --GNTAM--FGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKH--------LFPEFSKEISS 489
N ++ + TS H+ L H + +++ F E + SS
Sbjct: 145 LPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 490 S-QFHCDACHLAKD--HRVSFNSR--GYSASKPFYLIHSDVWGPSKIKTLSRKKWFVTFI 544
+ + C C + K HR SR ++ +PF +H+D++GP S +F++F
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 545 DDHTRVCWVYLMEKKSE--VEQRFQDFFNMIKNQFHTTIGILRSDNGTEYFNKYLSTFLV 602
D+ T+ WVY + + E + F IKNQF ++ +++ D G+EY N+ L FL
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 603 TNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNAL 651
NGI T + +G+AER NR LL+ R + +P +LW +A+
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAI 373
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 134 bits (336), Expect = 2e-30
Identities = 137/522 (26%), Positives = 244/522 (46%), Gaps = 69/522 (13%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K TW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARG-- 879
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 880 ---DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 936
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RLKKSLYGLKQS W+E S + + + FK+S
Sbjct: 937 PPPHLGMNDKL-----IRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS 991
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEFA 1174
+ + ++VDD+I+ D+ + L+ ++D K +LG +++Y LG+E
Sbjct: 992 Q----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1047
Query: 1175 RSKEGIFLNQRKYILDLLTETGMT-GCKAAETPMDPNVKLKS--------VAEDEI-IDR 1224
QR + L E +T P++P + S + +DE+ ID
Sbjct: 1048 --------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDE 1099
Query: 1225 ERY-------QRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGT 1276
+ Y Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T
Sbjct: 1100 DEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDT 1159
Query: 1277 PGKGLMFRNRGHIQVE----AYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVA 1332
K L++ + + A +DA + GN +S G + G ++ +S K ++
Sbjct: 1160 RDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTC 1218
Query: 1333 RSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHD-RTK 1391
S+ EAE +++ + + +QEL P + D+++ ISI + R +
Sbjct: 1219 TSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNR 1277
Query: 1392 HVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1278 FFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1319
Score = 103 bits (256), Expect = 4e-21
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 31/349 (8%)
Query: 327 IIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADGSYSSIA--GKGNIKISEQITLQS--- 381
++DSGAS + +H S +S + + + D +I G+++ Q ++
Sbjct: 32 LLDSGASRTLIRSAHHIHS---ASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIK 88
Query: 382 VLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPL 441
VLH P A +LLS+++L+ + C + V + ++ G + + Y+ + L
Sbjct: 89 VLHTPNIAYDLLSLNELAA---VDITACFTKNVLE-RSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 442 --GNTAM--FGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKH--------LFPEFSKEISS 489
N ++ + TS H+ L H + +++ F E + SS
Sbjct: 145 LPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSS 204
Query: 490 S-QFHCDACHLAKD--HRVSFNSR--GYSASKPFYLIHSDVWGPSKIKTLSRKKWFVTFI 544
+ + C C + K HR SR ++ +PF +H+D++GP S +F++F
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 545 DDHTRVCWVYLMEKKSE--VEQRFQDFFNMIKNQFHTTIGILRSDNGTEYFNKYLSTFLV 602
D+ T+ WVY + + E + F IKNQF ++ +++ D G+EY N+ L FL
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 603 TNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNAL 651
NGI T + +G+AER NR LL+ R + +P +LW +A+
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAI 373
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 131 bits (329), Expect = 2e-29
Identities = 133/515 (25%), Positives = 242/515 (46%), Gaps = 55/515 (10%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K TW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 1253 AYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARG-- 1306
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 1307 ---DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 1363
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RLKKSLYGLKQS W+E S + + + FK+S
Sbjct: 1364 PPPHLGMNDKL-----IRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNS 1418
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEFA 1174
+ + ++VDD+++ ++ + +L+ ++D K +LG +++Y LG+E
Sbjct: 1419 Q----VTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIK 1474
Query: 1175 RS-----KEGIFLNQRKYILDLLTETGMTGCKAAETPMDPNV-----KLKSVAEDEIIDR 1224
K G+ + + I L G K + P P + +L+ +D +
Sbjct: 1475 YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS-APGQPGLYIDQQELELEEDDYKMKV 1533
Query: 1225 ERYQRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMF 1283
Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T K L++
Sbjct: 1534 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIW 1593
Query: 1284 RNRGHI----QVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAE 1339
+ ++ +DA + GN +S G + G ++ +S K ++ S+ EAE
Sbjct: 1594 HKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1652
Query: 1340 FRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAIS-IAHNPVLHDRTKHVEVDKH 1398
+++ + + +QEL P + D+K+ IS I N R +
Sbjct: 1653 IHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1711
Query: 1399 FIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1712 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1746
Score = 104 bits (259), Expect = 2e-21
Identities = 103/439 (23%), Positives = 191/439 (43%), Gaps = 53/439 (12%)
Query: 259 NNSKAGKFGDRPMPTTSNAASSPFTKEQMDHLLKLLKFNSSPNTPIGTVAQTGKDSWAL- 317
N+S++ +P N + +K + + N+SP+T +++++ + L
Sbjct: 369 NDSRSYTNTTKPKVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKSTTEPIQLN 428
Query: 318 -------------SVQNHSNP--------WIIDSGASEHMTNCSHLFSSYFPSSGSEKVK 356
S NH+N ++DSGAS + +H S +S + +
Sbjct: 429 NKHDLILGQKLTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHS---ASSNPDIN 485
Query: 357 IADGSYSSIA--GKGNIKISEQITLQS---VLHVPKFACNLLSVHKLSEDSNCSVLFCRS 411
+ D +I G+++ Q ++ VLH P A +LLS+++L+ + C +
Sbjct: 486 VVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA---VDITACFT 542
Query: 412 TCVFQDQNSGKTIGTAREINGLYYFDETPL--GNTAM--FGSSRTSPPLVSNKIMLWHKR 467
V + ++ G + + Y+ + L N ++ + TS H+
Sbjct: 543 KNVLE-RSDGTVLAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFIHRM 601
Query: 468 LGHPSFSYLKH--------LFPEFSKEISSS-QFHCDACHLAKD--HRVSFNSR--GYSA 514
L H + +++ F E + SS+ + C C + K HR SR ++
Sbjct: 602 LAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNS 661
Query: 515 SKPFYLIHSDVWGPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSE--VEQRFQDFFNM 572
+PF +H+D++GP S +F++F D+ T+ WVY + + E + F
Sbjct: 662 YEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAF 721
Query: 573 IKNQFHTTIGILRSDNGTEYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNRHLLEV 632
IKNQF ++ +++ D G+EY N+ L FL NGI T + +G+AER NR LL+
Sbjct: 722 IKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDD 781
Query: 633 TRAIMFSMNVPKYLWGNAL 651
R + +P +LW +A+
Sbjct: 782 CRTQLQCSGLPNHLWFSAI 800
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 131 bits (329), Expect = 2e-29
Identities = 136/522 (26%), Positives = 243/522 (46%), Gaps = 69/522 (13%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K TW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 1253 AYHKEVNQLLKMKTWD-TDEYYDRKEIDPKRVINSMFIFNKKRDGT---HKARFVARG-- 1306
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 1307 ---DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 1363
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RLKKS YGLKQS W+E S + + + FK+S
Sbjct: 1364 PPPHLGMNDKL-----IRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS 1418
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEFA 1174
+ + ++VDD+I+ D+ + L+ ++D K +LG +++Y LG+E
Sbjct: 1419 Q----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1474
Query: 1175 RSKEGIFLNQRKYILDLLTETGMT-GCKAAETPMDPNVKLKS--------VAEDEI-IDR 1224
QR + L E +T P++P + S + +DE+ ID
Sbjct: 1475 --------YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDE 1526
Query: 1225 ERY-------QRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGT 1276
+ Y Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T
Sbjct: 1527 DEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDT 1586
Query: 1277 PGKGLMFRNRGHIQVE----AYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVA 1332
K L++ + + A +DA + GN +S G + G ++ +S K ++
Sbjct: 1587 RDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTC 1645
Query: 1333 RSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHD-RTK 1391
S+ EAE +++ + + +QEL P + D+++ ISI + R +
Sbjct: 1646 TSTTEAEIHAISESVPLLNNLSYLIQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNR 1704
Query: 1392 HVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1705 FFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1746
Score = 105 bits (261), Expect = 1e-21
Identities = 104/444 (23%), Positives = 192/444 (42%), Gaps = 53/444 (11%)
Query: 254 LHGRPNNSKAGKFGDRPMPTTSNAASSPFTKEQMDHLLKLLKFNSSPNTPIGTVAQTGKD 313
L N+S++ +P N + +K + + N+SP+T +++++ +
Sbjct: 364 LSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTARAHNVSTSNNSPSTDNDSISKSTTE 423
Query: 314 SWAL--------------SVQNHSNP--------WIIDSGASEHMTNCSHLFSSYFPSSG 351
L S NH+N ++DSGAS + +H S +S
Sbjct: 424 PIQLNNKHDLTLGQELTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHS---ASS 480
Query: 352 SEKVKIADGSYSSIA--GKGNIKISEQITLQS---VLHVPKFACNLLSVHKLSEDSNCSV 406
+ + + D +I G+++ Q ++ VLH P A +LLS+++L+ +
Sbjct: 481 NPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA---VDI 537
Query: 407 LFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPL--GNTAM--FGSSRTSPPLVSNKIM 462
C + V + ++ G + + Y+ + L N ++ + TS
Sbjct: 538 TACFTKNVLE-RSDGTVLAPIVQYGDFYWVSKRYLLPSNISVPTINNVHTSESTRKYPYP 596
Query: 463 LWHKRLGHPSFSYLKH--------LFPEFSKEISSS-QFHCDACHLAKD--HRVSFNSR- 510
H+ L H + +++ F E + SS+ + C C + K HR SR
Sbjct: 597 FIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRL 656
Query: 511 -GYSASKPFYLIHSDVWGPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSE--VEQRFQ 567
++ +PF +H+D++GP S +F++F D+ T+ WVY + + E + F
Sbjct: 657 KYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFT 716
Query: 568 DFFNMIKNQFHTTIGILRSDNGTEYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNR 627
IKNQF ++ +++ D G+EY N+ L FL NGI T + +G+AER NR
Sbjct: 717 TILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNR 776
Query: 628 HLLEVTRAIMFSMNVPKYLWGNAL 651
LL+ R + +P +LW +A+
Sbjct: 777 TLLDDCRTQLQCSGLPNHLWFSAI 800
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 130 bits (328), Expect = 2e-29
Identities = 134/516 (25%), Positives = 243/516 (46%), Gaps = 57/516 (11%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E+N L K TW TD YD+K + K V F K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMKTWD-TDKYYDRKEIDPKRVINSMFIFNRKRDGT---HKARFVARG-- 879
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LSLA++ N+ + Q D+ +A+L ++ EE+Y+R
Sbjct: 880 ---DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIR 936
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGS-VVKGHGFTQSQADHTMFFKH 1120
PP G DKL RLKKSLYGLKQS W+E S ++K G + + +F
Sbjct: 937 PPPHLGMNDKL-----IRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF--- 988
Query: 1121 SREGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGMEF 1173
E + ++VDD+++ ++ + +L+ ++D K +LG +++Y LG+E
Sbjct: 989 --ENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEI 1046
Query: 1174 ARS-----KEGIFLNQRKYILDLLTETGMTGCKAAETPMDPNV-----KLKSVAEDEIID 1223
K G+ + + I L G K + P P + +L+ +D +
Sbjct: 1047 KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLS-APGQPGLYIDQQELELEEDDYKMK 1105
Query: 1224 RERYQRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLM 1282
Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T K L+
Sbjct: 1106 VHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLI 1165
Query: 1283 FRNRGHI----QVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEA 1338
+ + ++ +DA + GN +S G + G ++ +S K ++ S+ EA
Sbjct: 1166 WHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEA 1224
Query: 1339 EFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAIS-IAHNPVLHDRTKHVEVDK 1397
E +++ + + +QEL P + D+K+ IS I N R +
Sbjct: 1225 EIHAISESVPLLNNLSYLIQELD-KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKA 1283
Query: 1398 HFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1284 MRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Score = 103 bits (256), Expect = 4e-21
Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 31/349 (8%)
Query: 327 IIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADGSYSSIA--GKGNIKISEQITLQS--- 381
++DSGAS + +H S +S + + + D +I G+++ Q ++
Sbjct: 32 LLDSGASRTLIRSAHHIHS---ASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIK 88
Query: 382 VLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPL 441
VLH P A +LLS+++L+ + C + V + ++ G + + Y+ + L
Sbjct: 89 VLHTPNIAYDLLSLNELAA---VDITACFTKNVLE-RSDGTVLAPIVKYGDFYWVSKKYL 144
Query: 442 --GNTAM--FGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKH--------LFPEFSKEISS 489
N ++ + TS H+ L H + +++ F E + SS
Sbjct: 145 LPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSS 204
Query: 490 S-QFHCDACHLAKD--HRVSFNSR--GYSASKPFYLIHSDVWGPSKIKTLSRKKWFVTFI 544
+ + C C + K HR SR ++ +PF +H+D++GP S +F++F
Sbjct: 205 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 264
Query: 545 DDHTRVCWVYLMEKKSE--VEQRFQDFFNMIKNQFHTTIGILRSDNGTEYFNKYLSTFLV 602
D+ T+ WVY + + E + F IKNQF ++ +++ D G+EY N+ L FL
Sbjct: 265 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 324
Query: 603 TNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNAL 651
NGI T + +G+AER NR LL+ R + +P +LW +A+
Sbjct: 325 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAI 373
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 130 bits (327), Expect = 3e-29
Identities = 133/515 (25%), Positives = 246/515 (46%), Gaps = 55/515 (10%)
Query: 953 AVKEEMNALNKNNTWCITDLPYDKKAVGCKWV----FTVKCKADGSVERYKARLVAKGFT 1008
A +E++ L K NTW T+ YD+ + K V F K DG+ +KAR VA+G
Sbjct: 1268 AYHKEISQLLKMNTWD-TNKYYDRNDIDPKKVINSMFIFNKKRDGT---HKARFVARG-- 1321
Query: 1009 QTHGIDYQETFAPVAKINSIR-----ILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMR 1063
I + +T+ + N++ LS+A++ ++ + Q D+ +A+L ++ EE+Y+R
Sbjct: 1322 ---DIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIR 1378
Query: 1064 LPP--GFEDKLGRGKVCRLKKSLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHS 1121
PP G DKL RL+KSLYGLKQS W+E S + Q + FK+S
Sbjct: 1379 PPPHLGLNDKL-----LRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNS 1433
Query: 1122 REGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIK--DLG----KLKY-FLGME-- 1172
+ + ++VDD+I+ D+ + L+ ++D K +LG +++Y LG+E
Sbjct: 1434 Q----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1489
Query: 1173 FARSKEGIFLNQRKYILDLLTETGMTGCKAAETPMDPNVKLKSVAEDEI-IDRERY---- 1227
+ RSK + L K + + L + + + P + +DE+ ID + Y
Sbjct: 1490 YQRSKY-MKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKV 1548
Query: 1228 ---QRLAGRLIYLSHT-RPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMF 1283
Q+L G Y+ + R D+ + ++ ++Q + P + + +++++ T K L++
Sbjct: 1549 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1608
Query: 1284 R----NRGHIQVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAE 1339
+ ++ A +DA + GN +S G + G ++ +S K ++ S+ EAE
Sbjct: 1609 HKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1667
Query: 1340 FRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHD-RTKHVEVDKH 1398
+V+ + + +QEL P + D+++ ISI + R +
Sbjct: 1668 IHAVSEAIPLLNNLSHLVQELN-KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAM 1726
Query: 1399 FIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQF 1433
+++++ + + YI TK +ADV+TK LP + F
Sbjct: 1727 RLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTF 1761
Score = 125 bits (314), Expect = 8e-28
Identities = 165/695 (23%), Positives = 281/695 (39%), Gaps = 108/695 (15%)
Query: 257 RPNNSKAGKFGDRPMPTTSNAASSPFTKEQMDHLLKLL---KFNSSPNT-PIGTVAQTGK 312
R N+SK R + A SS F++ DH+ + ++ S N +G + K
Sbjct: 385 RTNSSKP-----RAAKAHNIATSSKFSRVNNDHINESTVSSQYLSDDNELSLGQQQKESK 439
Query: 313 DSWALSVQNH-SNPWIIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADGSYSSIA--GKG 369
+ + + + +IDSGAS+ + +H P+S ++ I D I G
Sbjct: 440 PTHTIDSNDELPDHLLIDSGASQTLVRSAHYLHHATPNS---EINIVDAQKQDIPINAIG 496
Query: 370 NIKISEQI---TLQSVLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGT 426
N+ + Q T LH P A +LLS+ +L+ + N + F R+T +++ G +
Sbjct: 497 NLHFNFQNGTKTSIKALHTPNIAYDLLSLSELA-NQNITACFTRNTL---ERSDGTVLAP 552
Query: 427 AREINGLYYFDETPL--GNTAMFGSSRTSPPLVSNKIM--LWHKRLGHPSF--------- 473
+ Y+ + L + + + + NK L H+ LGH +F
Sbjct: 553 IVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKK 612
Query: 474 ---SYLKHLFPEFSKEISSSQFHCDACHLAKD--HRVSFNSR-GYSAS-KPFYLIHSDVW 526
+YLK E+S ++S + C C + K HR SR Y S +PF +H+D++
Sbjct: 613 NAVTYLKESDIEWS---NASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIF 669
Query: 527 GPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSE--VEQRFQDFFNMIKNQFHTTIGIL 584
GP S +F++F D+ TR WVY + + E + F IKNQF+ + ++
Sbjct: 670 GPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVI 729
Query: 585 RSDNGTEYFNKYLSTFLVTNGIIHQSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPK 644
+ D G+EY NK L F GI T + +G+AER NR LL R ++ +P
Sbjct: 730 QMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPN 789
Query: 645 YLWGNALLTACHLINRMPS-------------------RVLQYETPVQVLQNNFPTSRI- 684
+LW +A+ + + N + S +L + PV ++ N+ P S+I
Sbjct: 790 HLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPV-IVNNHNPDSKIH 848
Query: 685 ITNIPLKVFGCLCYVYIPNIFRSKLDPKAEKCVFLGYASNKKGYKCFNPVTKKFFESMDV 744
IP Y I+ L + ++ + FN T F + ++
Sbjct: 849 PRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQSKLDQFNYDTLTFDDDLNR 908
Query: 745 HFVEDQPFFRENSL-QGESQSSNEEDNFWEILPVLDDIVTNDHLDAKITEPRNPNLELLE 803
+Q F +N Q Q++ + ++ + + D + ND I NP
Sbjct: 909 LTAHNQSFIEQNETEQSYDQNTESDHDYQSEIEINSDPLVNDFSSQSI----NP------ 958
Query: 804 HMVFETGGEEGETLIKNPELRVYVRKKFHKDGTNPIVFPAEVQSDSPS------------ 851
L K P +V K+ D + + P+ V+S +P
Sbjct: 959 -----------LQLDKEPVQKVRAPKEVDADISEYNILPSPVRSRTPHIINKESTEMGGT 1007
Query: 852 -EGPTDNPSSSSSGNSSH-----SSNDLPDLSFPD 880
E T +P SS+ + + S ND+ DL+ D
Sbjct: 1008 VESDTTSPRHSSTFTARNQKRPGSPNDMIDLTSQD 1042
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 101 bits (251), Expect = 2e-20
Identities = 45/98 (45%), Positives = 70/98 (70%)
Query: 938 PRTIQEALGDPNWKLAVKEEMNALNKNNTWCITDLPYDKKAVGCKWVFTVKCKADGSVER 997
P+++ AL DP W A++EE++AL++N TW + P ++ +GCKWVF K +DG+++R
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 998 YKARLVAKGFTQTHGIDYQETFAPVAKINSIRILLSLA 1035
KARLVAKGF Q GI + ET++PV + +IR +L++A
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 82.0 bits (201), Expect = 1e-14
Identities = 36/82 (43%), Positives = 57/82 (68%)
Query: 1235 IYLSHTRPDIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMFRNRGHIQVEAY 1294
+YL+ TRPD+ FAV+ +SQF A A +AV+++L Y+KGT G+GL + +Q++A+
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1295 TDADWAGNINDRRSTSGYCTFV 1316
D+DWA + RRS +G+C+ V
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 50.8 bits (120), Expect = 3e-05
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 626 NRHLLEVTRAIMFSMNVPKYLWGNALLTACHLINRMPSRVLQYETPVQVLQNNFPTSRII 685
NR ++E R+++ +PK +A TA H+IN+ PS + + P +V + PT
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY- 60
Query: 686 TNIPLKVFGCLCYVYIPNIFRSKLDPKAEK 715
L+ FGC+ Y++ KL P+A+K
Sbjct: 61 ----LRRFGCVAYIHCD---EGKLKPRAKK 83
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 49.3 bits (116), Expect = 8e-05
Identities = 25/72 (34%), Positives = 40/72 (54%), Gaps = 4/72 (5%)
Query: 463 LWHKRLGHPSFSYLKHLFPEF---SKEISSSQFHCDACHLAKDHRVSFNSRGYSASKPFY 519
LWH RL H S ++ L + S ++SS +F C+ C K HRV+F++ ++ P
Sbjct: 71 LWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKF-CEDCIYGKTHRVNFSTGQHTTKNPLD 129
Query: 520 LIHSDVWGPSKI 531
+HSD+WG +
Sbjct: 130 YVHSDLWGAPSV 141
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 45.8 bits (107), Expect = 8e-04
Identities = 31/95 (32%), Positives = 45/95 (46%), Gaps = 7/95 (7%)
Query: 306 TVAQTGKDSWALSVQN-----HSNPWIIDSGASEHMTNCSHLFSSYFPSSGSEKVKIADG 360
T Q SW + + S+ WI D+G + HM + +FSS+ SS + V+ G
Sbjct: 54 TAGQITPKSWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGG 113
Query: 361 SYSSIAGKGNIKISEQITLQSVLHVPKFACNLLSV 395
S I G G + I + L V +VP NL+SV
Sbjct: 114 SI-PIMGSGTVNIG-TVQLHDVSYVPDLPVNLISV 146
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 40.8 bits (94), Expect = 0.027
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 20/208 (9%)
Query: 426 TAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKHLFPEF-- 483
T E + + Y D L + + R P KI+L GHP +K F
Sbjct: 750 TEIEKHWIRYRDRLKLIHGCLLLDDRVIVPKSLQKIVLKQLHEGHPGIVQMKQKARSFVF 809
Query: 484 ----SKEISSSQFHCDACHL-AKDHRVSFNSRGYSASKPFYLIHSDVWGPSKIKTLSRKK 538
+I + HC+ C +K RV + P+ IH D GP
Sbjct: 810 WRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWKRIHIDFAGPLN------GC 863
Query: 539 WFVTFIDDHTRVCWVYLMEKKSEVE--QRFQDFFNMIKNQFHTTIGILRSDNGTEYFNKY 596
+ + +D T+ V L S V ++ F++ H + SDNGT+ +
Sbjct: 864 YLLVVVDAKTKYAEVKLTRSISAVTTIDLLEEIFSI-----HGYPETIISDNGTQLTSHL 918
Query: 597 LSTFLVTNGIIHQSTCRDTPQQNGIAER 624
+ ++GI H+++ P+ NG AER
Sbjct: 919 FAQMCQSHGIEHKTSAVYYPRSNGAAER 946
>FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.24.-)
Length = 725
Score = 38.5 bits (88), Expect = 0.13
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 1124 GKIAILIVYVDDIIMTG--DDIGEISDLKRRLEAEFDIKDLGKLKY-------FLGMEFA 1174
G+ A +I+Y + I TG DDI + + R++ E+ + LG +KY FLG +++
Sbjct: 532 GRAAEMIIYGKENISTGASDDISRATKIARKMVTEWGMSALGPIKYEEDTENPFLGRDYS 591
Query: 1175 RSKEGIFLNQRKYILDL-LTETGMTGCKAAETPMDPNVKLKSVAEDEIIDRE 1225
+ G F ++ + +DL + + + A ++ N++L + +D +++ E
Sbjct: 592 K---GTFGSKMAHEIDLEIRKIISASEEIAIKAIEQNLELLELIKDSLLENE 640
>RRN7_SCHPO (Q9UST5) RNA polymerase I specific transcription
initiation factor rrn7
Length = 537
Score = 36.2 bits (82), Expect = 0.66
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 593 FNKYLSTFLVTNGIIHQSTCRDT------PQQNGIAERKNRHLLEVTRAIMFSMNVPKYL 646
+ + S+FL N QS D+ P+ A+ +R E +++ S++ P+ L
Sbjct: 124 YESFTSSFLSLNQNSTQSESSDSDFDLIDPESQPGADPSSRKTKETSQS--HSISYPRLL 181
Query: 647 WGNALLTACHLINRMPSRVLQYETPVQVLQNNFPTSRIITNIPLKVFGCLCYVYI 701
+ +A + L+ R+P + + E V + +N P R IPLK+F L Y+
Sbjct: 182 YSSAFIYVACLLLRLPLTIHKLE--VLIRKNIIPYYRAYKQIPLKIFKRLQKNYV 234
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,815,162
Number of Sequences: 164201
Number of extensions: 7946416
Number of successful extensions: 19669
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 19542
Number of HSP's gapped (non-prelim): 72
length of query: 1436
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1313
effective length of database: 39,777,331
effective search space: 52227635603
effective search space used: 52227635603
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC135396.1