BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135311.8 + phase: 0 
         (189 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14...    31  1.9
YACH_BACSU (P37569) Hypothetical protein yacH                          30  3.3
ALL7_ASPFU (O42799) Allergen Asp f 7 (Fragment)                        30  4.3
TRIA_HUMAN (Q15643) Thyroid receptor interacting protein 11 (TRI...    29  7.4
MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p...    29  7.4
RFCL_THEAC (Q9HIP7) Replication factor C large subunit (RFC larg...    28  9.7
NOTC_DROME (P07207) Neurogenic locus Notch protein precursor           28  9.7
LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain L...    28  9.7

>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14)
           (V-ATPase C subunit) (Vacuolar proton pump C subunit)
          Length = 714

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 71  STHTKAYLTLNSFQKGGDGGGPSE----CDKQYHSDDTPVVALS--TGWFNHKSRCLNNI 124
           ST   A    ++   GG GGGP+     C   Y S   P  + S  +      S+ LNN 
Sbjct: 265 STSAAAAAAASNSSGGGGGGGPASCSTLCSSAYFSTSAPTTSSSVHSSMSRSNSKRLNNN 324

Query: 125 TISANGRNV 133
           T S N   +
Sbjct: 325 TCSINNNKL 333


>YACH_BACSU (P37569) Hypothetical protein yacH
          Length = 185

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 67  SPSVSTHTKAYLTLNSFQKGGDGGGPSECDKQYHSDDTPVV-ALSTGWFNHKSRCLNNIT 125
           S  +S   K  +T   F+K G  G  SEC K +HS+ TP++  + +G   H  +    I 
Sbjct: 75  SEQISACPKCGMTFQQFRKIGRFGC-SECYKTFHSNITPILRKVHSGNTVHAGKIPKRIG 133

Query: 126 ISANGRNVVAMVVDECDS 143
            + + R  + M+  E +S
Sbjct: 134 GNLHVRRQIDMLKKELES 151


>ALL7_ASPFU (O42799) Allergen Asp f 7 (Fragment)
          Length = 112

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 21/69 (30%), Positives = 25/69 (35%), Gaps = 1/69 (1%)

Query: 80  LNSFQKGGDGGGPSECDKQYHSDDTPVVALSTGWFNHKSRCLNNITISANGRNVVAMVVD 139
           L  +        PS C          VVAL  G       C   +TI+ NG    A VVD
Sbjct: 18  LTYYDTATSASAPSSCGLTNDGFSENVVALPVGIMTDAD-CGKTVTITYNGITKTATVVD 76

Query: 140 ECDSRKGCD 148
           +C   K  D
Sbjct: 77  KCMGCKPTD 85


>TRIA_HUMAN (Q15643) Thyroid receptor interacting protein 11 (TRIP-11)
            (Golgi-associated microtubule-binding protein 210)
            (GMAP-210) (Trip230) (Clonal evolution related gene on
            chromosome 14)
          Length = 1979

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 17/63 (26%), Positives = 26/63 (40%)

Query: 94   ECDKQYHSDDTPVVALSTGWFNHKSRCLNNITISANGRNVVAMVVDECDSRKGCDEQHDY 153
            E ++ +H D   V    TGW    S+ + N  +  N ++VV     E   +    E H  
Sbjct: 1816 EMEQLFHDDQGSVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNSSFSELFVKFLETESHPS 1875

Query: 154  QPP 156
             PP
Sbjct: 1876 IPP 1878


>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3
            precursor
          Length = 3767

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 37/150 (24%), Positives = 56/150 (36%), Gaps = 29/150 (19%)

Query: 35   RIR-GKKAPPGKCNQENDSDCCV--------QGKMYTTYVCSPSVSTHTKAYLTLNSFQK 85
            RIR G+ A PG CN  +   C V        +G +YT   C  +   H    + L    K
Sbjct: 1555 RIRNGQCAYPGSCNPNDPMSCDVRKRQQCLPRGNIYTCQ-CGRNEKRHPITDICL----K 1609

Query: 86   GGDGGGPSECDKQ---YHSDDTPVVALSTGWFNHKSRCLNNITISANGRNVVAMVVDECD 142
                 G  +CD+      +D++ + A  +G+ +H             GR  VA+  +  D
Sbjct: 1610 NECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPN-----PSERPGRVCVALQNECLD 1664

Query: 143  SRKGC-------DEQHDYQPPCPNNIVDAS 165
                C       D +  Y   C +  VD S
Sbjct: 1665 GSNRCSPNALCTDTEEGYVCRCKSGFVDYS 1694


>RFCL_THEAC (Q9HIP7) Replication factor C large subunit (RFC large
           subunit) (Clamp loader large subunit)
          Length = 418

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 81  NSFQKGGDGGGPSECDKQYHSDDTPVVALSTGWFNHKSRCLNNITISAN 129
           N F++GGD GG  E  K   +   P+V      F  + +   +  ISA+
Sbjct: 114 NMFERGGDTGGIYELSKIIKNSANPIVITMNDIFEFRKKNYASDVISAS 162


>NOTC_DROME (P07207) Neurogenic locus Notch protein precursor
          Length = 2703

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 28/135 (20%), Positives = 48/135 (34%), Gaps = 14/135 (10%)

Query: 44  GKCNQENDSDCCVQGKMYTTYVCSPSVSTHTKAYLTLNSFQKGGDGGGPSECD------- 96
           GKC  + +S  C+    YT Y+C   ++         +   +   G    +C        
Sbjct: 614 GKCIDDVNSFKCLCDPGYTGYICQKQINECESNPCQFDGHCQDRVGSYYCQCQAGTSGKN 673

Query: 97  -----KQYHSDDTPVVALSTGWFN-HKSRCLNNITISANGRNVVAMVVDECDSRKGC-DE 149
                 + HS+     A      N +K +C+   T     +NV   +   C +   C D+
Sbjct: 674 CEVNVNECHSNPCNNGATCIDGINSYKCQCVPGFTGQHCEKNVDECISSPCANNGVCIDQ 733

Query: 150 QHDYQPPCPNNIVDA 164
            + Y+  CP    DA
Sbjct: 734 VNGYKCECPRGFYDA 748


>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain
           Lhx7) (L3)
          Length = 367

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 23/91 (25%), Positives = 33/91 (35%), Gaps = 21/91 (23%)

Query: 32  PSGRIRGKKAPPGKCNQEND------------SDCCVQGKMYTTYVCSPSVSTHTKAYL- 78
           P     G   PPGKC   +             +D C   +  +  VC  S+  HT  Y+ 
Sbjct: 80  PQSMASGSVCPPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIK 139

Query: 79  ------TLNSFQKGGDGGGPSECDKQYHSDD 103
                  L+ F++ G     S C +  HS D
Sbjct: 140 DKDIFCKLDYFRRYGT--RCSRCGRHIHSTD 168


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.134    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,187,160
Number of Sequences: 164201
Number of extensions: 1083785
Number of successful extensions: 1952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 8
length of query: 189
length of database: 59,974,054
effective HSP length: 104
effective length of query: 85
effective length of database: 42,897,150
effective search space: 3646257750
effective search space used: 3646257750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)