BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135311.5 + phase: 0
(346 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ESCA_ARATH (Q9S7C9) Putative DNA-binding protein ESCAROLA 101 3e-21
HMPR_DROME (P06601) Segmentation protein paired 37 0.096
GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 p... 36 0.12
CEAA_BACTS (Q45710) Pesticidial crystal protein cry14Aa (Insecti... 36 0.16
GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10... 35 0.21
ADRM_RAT (Q9JMB5) Adhesion regulating molecule 1 precursor (110 ... 35 0.21
CA64_HUMAN (Q14031) Collagen alpha 6(IV) chain precursor 35 0.28
AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment) 35 0.28
ADRM_HUMAN (Q16186) Adhesion regulating molecule 1 precursor (11... 35 0.36
P121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 1... 34 0.47
ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4 34 0.47
CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-bindin... 34 0.47
ADRM_MOUSE (Q9JKV1) Adhesion regulating molecule 1 precursor (11... 34 0.47
KG88_MOUSE (P59281) Protein KIAA1688 homolog (Fragment) 34 0.62
CA1G_HUMAN (Q9UMD9) Collagen alpha 1(XVII) chain (Bullous pemphi... 34 0.62
YK83_MYCTU (Q10691) Hypothetical protein Rv2083/MT2145 33 0.81
TF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-... 33 0.81
MYCN_MOUSE (P03966) N-myc proto-oncogene protein 33 0.81
CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding ... 33 0.81
PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix prot... 33 1.1
>ESCA_ARATH (Q9S7C9) Putative DNA-binding protein ESCAROLA
Length = 311
Score = 101 bits (251), Expect = 3e-21
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 22/221 (9%)
Query: 114 PSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAAK 173
P S+P T + KR RGRPPGS K A +++ + HV+E++ G DI
Sbjct: 73 PDSDPNTSSSAPGKRPRGRPPGSKNK---AKPPIIVTRDSPNALRSHVLEVSPGADIVES 129
Query: 174 ILTFSQVRARALCVLSSSGSVSSVIIREP---------SISGGTLKYEGHFHIMSMSGCY 224
+ T+++ R R + VL +G+VS+V +R+P S GG + G F I+S++G
Sbjct: 130 VSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTV 189
Query: 225 VPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSF---LWGRLKAKN 281
+P GGLSI L G G++ GG+V PL+A++PV +M SF ++ RL +
Sbjct: 190 LPPPAPPGA---GGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEE 246
Query: 282 KKKESSEDAEGTVESDHQGAHNPAALNSISPNQNLTPTSSL 322
+++E G Q P+A SP +T L
Sbjct: 247 EEEEGGGGGGGGGGGPPQMQQAPSA----SPPSGVTGQGQL 283
>HMPR_DROME (P06601) Segmentation protein paired
Length = 613
Score = 36.6 bits (83), Expect = 0.096
Identities = 46/172 (26%), Positives = 69/172 (39%), Gaps = 19/172 (11%)
Query: 3 HGDHMALSNSASYYMQQRVL-PGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTT 61
+G H +S SA+ M L PG P P +Q NP+ S I G + G T
Sbjct: 329 YGSHANISVSAAAPMASSNLSPGITTTP-----PHHHQFYNPSANTASYIMPGEN--GNT 381
Query: 62 LPLESSAISSQGVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSP-SPTPSSNPGT 120
P + +SS + G G + + PR + VS A PTP+S
Sbjct: 382 TPTGNIIVSSYETQL----GSVYGTETETHQTMPRNESPNESVSSAFGQLPPTPNSLSAV 437
Query: 121 MTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAA 172
++ G G G+ Q LA + SAG+ + +++ S + IAA
Sbjct: 438 VSGAGVTSSSGANSGADPSQSLA------NASAGSEELSAALKVESVDLIAA 483
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12
precursor
Length = 660
Score = 36.2 bits (82), Expect = 0.12
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 19 QRVLPGSGAQPELHVSPSFNQL----SNPNLPFQSN-IGGGGSNIGTTLPLESSAISSQG 73
QR PG G PE P Q ++P P Q +G G T P + G
Sbjct: 480 QRQQPGQGQHPEQGQQPGQGQQGYYPTSPQQPGQGQQLGQGQQGYYPTSPQQPGQGQQPG 539
Query: 74 VNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPS-------PTPSSNPGTMTQGGP 126
GH + +T G+ ++ G + + P PT PG Q G
Sbjct: 540 QGQQGHCPMSPQQT-----GQAQQLGQGQQIGQVQQPGQGQQGYYPTSLQQPGQGQQSGQ 594
Query: 127 --KRGRGRPPGSGKK 139
+ G+G PG G++
Sbjct: 595 GQQSGQGHQPGQGQQ 609
>CEAA_BACTS (Q45710) Pesticidial crystal protein cry14Aa
(Insecticidal delta-endotoxin CryXIVA(a)) (Crystaline
entomocidal protoxin) (132 kDa crystal protein)
Length = 1186
Score = 35.8 bits (81), Expect = 0.16
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 23 PGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESSAISSQG----VNMSG 78
P S Q + ++ + +Q+SN NL S S++ + LP G +++
Sbjct: 591 PNSDTQIGVLITQNGSQISNSNLTLYSTTD---SSMSSNLPQNVYVTGENGNYTLLDLYS 647
Query: 79 HTGVPS-GETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGRPPGSG 137
T V S G+ + G +K DR+ + P P P++N T G G PP G
Sbjct: 648 TTNVLSTGDITLKLTGGNQKIFIDRIEFIPTMPVPAPTNN--TNNNNG-DNGNNNPPHHG 704
Query: 138 ----KKQQLAS----FGELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARALCVLS 189
QQL S F ++ T + + + +S E++A K+ ++ Q+ AL V++
Sbjct: 705 CAIAGTQQLCSGPPKFEQVSDLEKITTQVYMLFKSSSYEELALKVSSY-QINQVALKVMA 763
Query: 190 SS 191
S
Sbjct: 764 LS 765
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10
precursor
Length = 648
Score = 35.4 bits (80), Expect = 0.21
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 19 QRVLPGSGAQPELHVSPSFNQL----SNPNLPFQSN-IGGGGSNIGTTLPLESSAISSQG 73
QR PG G PE P Q ++P P Q +G G T P + G
Sbjct: 468 QRQQPGQGQHPEQGKQPGQGQQGYYPTSPQQPGQGQQLGQGQQGYYPTSPQQPGQGQQPG 527
Query: 74 VNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPS-------PTPSSNPGTMTQGGP 126
GH T ++ G+ ++ G + + P PT PG Q G
Sbjct: 528 QGQQGHC-----PTSPQQSGQAQQPGQGQQIGQVQQPGQGQQGYYPTSVQQPGQGQQSGQ 582
Query: 127 --KRGRGRPPGSGKK 139
+ G+G PG G++
Sbjct: 583 GQQSGQGHQPGQGQQ 597
>ADRM_RAT (Q9JMB5) Adhesion regulating molecule 1 precursor (110 kDa
cell membrane glycoprotein) (Gp110)
Length = 407
Score = 35.4 bits (80), Expect = 0.21
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 53 GGGSNIGTTLPLESSAISSQGVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSP 112
G S +G++ P SS+ SS + S V T R P + A SPSP
Sbjct: 190 GLASLLGSSGPPASSSSSS---SRSQSAAVTPSSTTSSARATPAPSAP--AAASATSPSP 244
Query: 113 TPSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIAS--GEDI 170
PSS GT T P +P Q + + + +G G+ +++AS +I
Sbjct: 245 APSSGNGTSTAASPT----QPIQLSDLQSILATMNVPAGPGGS----QQVDLASVLTPEI 296
Query: 171 AAKILTFSQVRARALCVLSSSGSV 194
A IL + V+ R L L S S+
Sbjct: 297 MAPILANADVQERLLPYLPSGESL 320
>CA64_HUMAN (Q14031) Collagen alpha 6(IV) chain precursor
Length = 1691
Score = 35.0 bits (79), Expect = 0.28
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 43 PNLPFQSNIGGGGSNIGTTLPLESSAISSQGVNMSGHTGVPSGETV---KRKRGRPRKYG 99
P LP G G LP E G+ +G G+P + K K G P + G
Sbjct: 587 PGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQG 646
Query: 100 ADRVVSLALS----PSPTPSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGT 155
+ L S PS PGT GPK RG P G+ S GE GS G
Sbjct: 647 LPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGE--PGSPGL 704
Query: 156 GFIPHV 161
+P +
Sbjct: 705 VHLPEL 710
>AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment)
Length = 448
Score = 35.0 bits (79), Expect = 0.28
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 38 NQLSNPNLPFQSNIGGGGSNIG-TTLPLESSAISSQGVNMSGHTGVPSGETV-----KRK 91
+ ++N N +N SN+G + P +SSA S+ + P E KRK
Sbjct: 125 SNINNNNNNSNNNNNNNNSNLGINSSPTQSSANSADKRSRGRPRKNPPSEPKDTSGPKRK 184
Query: 92 RGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGRPP 134
RGRP K + +P P P PG+ KRGR + P
Sbjct: 185 RGRPPKMDEEG------NPQPKPVPQPGS----NKKRGRPKKP 217
>ADRM_HUMAN (Q16186) Adhesion regulating molecule 1 precursor (110
kDa cell membrane glycoprotein) (Gp110)
Length = 407
Score = 34.7 bits (78), Expect = 0.36
Identities = 53/197 (26%), Positives = 74/197 (36%), Gaps = 22/197 (11%)
Query: 8 ALSNSASYYMQQRVLPGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESS 67
AL S S + L G G L + S +QL P + +GG G T P +S
Sbjct: 136 ALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGP--AGLGGLGGLGALTGPGLAS 193
Query: 68 AISSQGV--------NMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPG 119
+ S G + S V T R P + A SPSP PSS G
Sbjct: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP--AAASATSPSPAPSSGNG 251
Query: 120 TMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIAS--GEDIAAKILTF 177
T P +P Q + + + +G AG +++AS +I A IL
Sbjct: 252 ASTAASPT----QPIQLSDLQSILATMNVPAGPAG----GQQVDLASVLTPEIMAPILAN 303
Query: 178 SQVRARALCVLSSSGSV 194
+ V+ R L L S S+
Sbjct: 304 ADVQERLLPYLPSGESL 320
>P121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121
(Pore membrane protein of 121 kDa) (P145)
Length = 1229
Score = 34.3 bits (77), Expect = 0.47
Identities = 68/303 (22%), Positives = 104/303 (33%), Gaps = 57/303 (18%)
Query: 49 SNIGGGGSNIGTTLPLESSAISSQGVNMSGHT-GVPSGETVKRKRGRPRKYGADRVVSLA 107
++ G GS + T+ P SS + N S T +P G + K
Sbjct: 893 ADFSGFGSTLATSAPATSSQPTLTFSNTSTPTFNIPFGSSAK------------------ 934
Query: 108 LSPSPTPSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMS---------GSAGTGFI 158
SP PS PG Q G+PPG+ K SFG + +A T
Sbjct: 935 ---SPLPSY-PGANPQPAFGAAEGQPPGAAKPALTPSFGSSFTFGNSAAPAPATAPTPAP 990
Query: 159 PHVIEIASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIM 218
I+I TF A + +++ + + +P+ G T + F
Sbjct: 991 ASTIKIVPAHVPTPIQPTFGGATHSAFGLKATASAFGAPASSQPAFGGSTAVFS--FGAA 1048
Query: 219 SMSGCYVPTENGSSRNRDGGLSISLLG---PDGRLFGGAVG-------GPLVAASPVQVM 268
+ SG T+ SS G S S+ G P FGG+ G VA
Sbjct: 1049 TSSGFGATTQTASS-----GSSSSVFGSTTPSPFTFGGSAAPAGSGSFGINVATPGSSAT 1103
Query: 269 IGSFLWGRLKAKNKKKES------SEDAEGTVESDHQGAHNPAALNSISP--NQNLTPTS 320
G+F +G ++ + + ++A GT A N ++ P TPT
Sbjct: 1104 TGAFSFGAGQSGSTATSTPFTGGLGQNALGTTGQSTPFAFNVSSTTESKPVFGGTATPTF 1163
Query: 321 SLS 323
L+
Sbjct: 1164 GLN 1166
>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4
Length = 972
Score = 34.3 bits (77), Expect = 0.47
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 90 RKRGRPRKY-------GADRVVSLALS-PSPTPSSNPGTMTQG--GPKRGRGRP 133
R+RGRPRKY G++ ++ P SS+P T PKRGRGRP
Sbjct: 101 RRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGRGRP 154
Score = 31.2 bits (69), Expect = 4.0
Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 12/58 (20%)
Query: 89 KRKRGRPRKYGADRVVSLALSPSPTPSSNPGT--MTQGGPKRGRGRPPGSGKKQQLAS 144
KR RGRPRK + P SS G + KRGRGRPP +Q++A+
Sbjct: 201 KRGRGRPRK----------IKPEEGSSSQNGLSPLVVLPAKRGRGRPPLHRSEQKIAN 248
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding
factor) (CTCFL paralog) (11-zinc finger protein)
Length = 727
Score = 34.3 bits (77), Expect = 0.47
Identities = 30/104 (28%), Positives = 40/104 (37%), Gaps = 19/104 (18%)
Query: 78 GHTGVPSGETVKRKRGRPRKYGADRVVSL------------------ALSPSPTPSSNPG 119
G G GET K KRGR RK + + S A+ P P P
Sbjct: 582 GVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPV 641
Query: 120 TMTQGGPKRGRGRPPG-SGKKQQLASFGELMSGSAGTGFIPHVI 162
T K+ RGRPPG + + +Q + TG I ++I
Sbjct: 642 TPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENII 685
>ADRM_MOUSE (Q9JKV1) Adhesion regulating molecule 1 precursor (110
kDa cell membrane glycoprotein) (Gp110) (ARM-1)
Length = 407
Score = 34.3 bits (77), Expect = 0.47
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 8 ALSNSASYYMQQRVLPGSGAQPELHVSPSFNQLSNPNLPFQ-SNIGGGGSNIGTTLP--L 64
+L S S + L G G L + S +QL P +GG G+ G L L
Sbjct: 136 SLGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLL 195
Query: 65 ESS---AISSQGVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTM 121
SS A SS + S V + R P + A SPSP PSS GT
Sbjct: 196 GSSGPPASSSSSSSRSQSAAVTPSSSTSSARATPAPSAP--AAASATSPSPAPSSGNGTS 253
Query: 122 TQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIAS--GEDIAAKILTFSQ 179
T P +P Q + + + +G G+ +++AS +I A IL +
Sbjct: 254 TAASPT----QPIQLSDLQSILATMNVPAGPGGS----QQVDLASVLTPEIMAPILANAD 305
Query: 180 VRARALCVLSSSGSV 194
V+ R L L S S+
Sbjct: 306 VQERLLPYLPSGESL 320
>KG88_MOUSE (P59281) Protein KIAA1688 homolog (Fragment)
Length = 1097
Score = 33.9 bits (76), Expect = 0.62
Identities = 59/246 (23%), Positives = 96/246 (38%), Gaps = 49/246 (19%)
Query: 16 YMQQRV-LPGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESSAISSQGV 74
Y++Q V + +G+ P+L P NP GGG T L+ S +
Sbjct: 380 YVRQLVYVEQAGSSPKLRAGPRHKYAPNP---------GGG-----TYSLQPSPCLLRDQ 425
Query: 75 NMSGHTGVPSGE--TVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMT---QGGPKRG 129
+ GV SG+ T++ RP + P+P P + M+ Q
Sbjct: 426 RL----GVRSGDYSTMEGPESRPSQ-----------PPTPLPQAQEDAMSWSSQQDTMSS 470
Query: 130 RGRPPGSGK-KQQLASFGELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARALCVL 188
G PG+ K K + S ++ S S+ G + E E+ + + + V+A A V
Sbjct: 471 TGYSPGTRKRKNRKPSLCQVPSTSSTDGAGGLLGEQPLTEERSPCRASLTPVKAEADLVR 530
Query: 189 SSSGSVSSVIIREPSISGGTLKYEG---HFHIMSMSGCYVPTENGSSRNRDGGLSISLLG 245
+ EP ++ L +E HFH M G + ++GS DG + + + G
Sbjct: 531 GTP---------EPFLAQARLAWEAQQAHFH-MKQRGSWDSQQDGSGYESDGAVPLPMPG 580
Query: 246 PDGRLF 251
P R F
Sbjct: 581 PVVRAF 586
>CA1G_HUMAN (Q9UMD9) Collagen alpha 1(XVII) chain (Bullous pemphigoid
antigen 2) (180 kDa bullous pemphigoid antigen 2)
Length = 1497
Score = 33.9 bits (76), Expect = 0.62
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 38/209 (18%)
Query: 22 LPGSGAQPELHVSPSFNQLSNPNLP--------FQSNIGGGGSNIGTTLP-LESSAISSQ 72
LPG P +S S L P P Q G G LP +S SS
Sbjct: 886 LPGPPGPPGSFLSNSETFLFGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSF 945
Query: 73 GVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGR 132
G+N+ G G P + K +G P GA L + P+ + TM GP G
Sbjct: 946 GLNLQGPPGPPGPQGPKGDKGDPGVPGA-----LGIPSGPSEGGSSSTMYVSGPP-GPPG 999
Query: 133 PPG-------SGKKQQ-----------LASFGELMSGSAGTGFIPHVIEIASGE-----D 169
PPG SG++ Q + S+ + G G P + +GE +
Sbjct: 1000 PPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSE 1059
Query: 170 IAAKILTFSQVRARALCVLSSSGSVSSVI 198
+A+ ++++ + + + SSS S ++
Sbjct: 1060 LASHVVSYLRTSGYGVSLFSSSISSEDIL 1088
>YK83_MYCTU (Q10691) Hypothetical protein Rv2083/MT2145
Length = 314
Score = 33.5 bits (75), Expect = 0.81
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 108 LSPSPTPSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASG 167
L P P P+S+P T G P + PP G AS G+AG +P A G
Sbjct: 189 LGPPPVPTSSPPTTPAGAPTKSATMPPPGG-----ASPASAHMGAAGMPMVPPGAMGARG 243
Query: 168 E 168
E
Sbjct: 244 E 244
>TF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1
PDGF-responsive element-binding protein) (SPRE-binding
protein) (Nuclear factor SPBP)
Length = 1983
Score = 33.5 bits (75), Expect = 0.81
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Query: 19 QRVLPGSGAQPELHVSPSFNQLSNPNLPFQS--NIGGGGSNIGTTLPLESSAISSQGVNM 76
QRV+ + A ++ + Q + P +P +S S I P +S + S +
Sbjct: 354 QRVMQYTNAATKIPLQSQVGQYNQPEVPVRSPMQFHQNFSPISNPSPA-ASVVQSPSCSS 412
Query: 77 SGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGRPPGS 136
+ + SGE ++ +G +R++ L SPTPS P + +G G
Sbjct: 413 TPSPLMQSGENLQCGQGNVPMSSRNRILQLLPQLSPTPSMMPSPNSHAAGFKGFGLEGVP 472
Query: 137 GKKQQLASFGELMSGSAGTGFIPHVIE 163
K+ L + S+ +P+ ++
Sbjct: 473 EKRLTDPGLSSLSALSSQVANLPNTVQ 499
Score = 31.6 bits (70), Expect = 3.1
Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 20/142 (14%)
Query: 13 ASYYMQQRVLPGSGAQPELHVSPSFNQLSNPNLPFQSNIGG-GGSNIGTTLPLE-----S 66
+SY+ Q+ P E+H S + S N GG GG + GT +
Sbjct: 8 SSYHGNQQSYP-----QEVHSSSRIEEFSPRQAQMFQNFGGAGGGSSGTGSSSSGRRGTA 62
Query: 67 SAISSQGVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGP 126
+A ++ SGH G RK Y A ++A P P GP
Sbjct: 63 AAAAAMASETSGHQGYQGF----RKEAGDFYYMAGNKDTVAAGTPQPPQRRPS-----GP 113
Query: 127 KRGRGRPPGSGKKQQLASFGEL 148
+ G P GS Q AS G +
Sbjct: 114 VQSYGPPQGSSFGNQYASEGHV 135
>MYCN_MOUSE (P03966) N-myc proto-oncogene protein
Length = 462
Score = 33.5 bits (75), Expect = 0.81
Identities = 27/104 (25%), Positives = 41/104 (38%), Gaps = 8/104 (7%)
Query: 52 GGGGSNIGTTLPLESSAISSQGVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPS 111
G G S+ G SS+ S G + P+ E V P S+ +P+
Sbjct: 152 GVGASSPGGRALGGSSSASHTGATLPTDLSHPAAECVDPAVVFPFPVNKRESASVPAAPT 211
Query: 112 PTPSSN--------PGTMTQGGPKRGRGRPPGSGKKQQLASFGE 147
P+++ P T P R GRP SG+ + L++ GE
Sbjct: 212 SAPATSAAVTSVSVPATAPVAAPARAGGRPASSGEAKALSTSGE 255
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding
factor) (CTCFL paralog) (11-zinc finger protein)
Length = 737
Score = 33.5 bits (75), Expect = 0.81
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 78 GHTGVPSGETVKRKRGRPRKYGADRVVS--------------------LALSPSPTPSSN 117
G G GET K KRGR RK + + S + + P P P
Sbjct: 582 GVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEEEEEPAVEIEPEPEPQPQ 641
Query: 118 PGTMTQGGP--------KRGRGRPPG-SGKKQQLASFGELMSGSAGTGFIPHVI 162
P Q P K+ RGRPPG + + +Q + TG I ++I
Sbjct: 642 PQPQPQPQPVAPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENII 695
>PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix
protein) (Aczonin) (Brain-derived HLMN protein)
Length = 5038
Score = 33.1 bits (74), Expect = 1.1
Identities = 33/121 (27%), Positives = 51/121 (41%), Gaps = 11/121 (9%)
Query: 18 QQRVLPGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESSAISSQGVNMS 77
+Q+V + E PS Q S +P Q G G I +P S ++SSQ +
Sbjct: 189 KQKVAQKDQGKSEGITKPSLQQPSPKLIPKQQ--GPGKEVIPQDIP--SKSVSSQ---QA 241
Query: 78 GHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGRPPGSG 137
T + T K + P + A + +A P P + T+ Q GP + +P G+G
Sbjct: 242 EKTKPQAPGTAKPSQQSPAQTPAQQAKPVAQQPGPAKA----TVQQPGPAKSPAQPAGTG 297
Query: 138 K 138
K
Sbjct: 298 K 298
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,082,931
Number of Sequences: 164201
Number of extensions: 2099854
Number of successful extensions: 6014
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 5844
Number of HSP's gapped (non-prelim): 235
length of query: 346
length of database: 59,974,054
effective HSP length: 111
effective length of query: 235
effective length of database: 41,747,743
effective search space: 9810719605
effective search space used: 9810719605
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC135311.5