BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135234.2 - phase: 0 /pseudo
(1380 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 42 0.012
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 42 0.012
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 42 0.012
PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 37 0.29
PCP_BACAN (Q81NT5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 36 0.83
NLG3_RAT (Q62889) Neuroligin 3 precursor (Gliotactin homolog) 35 1.4
NLG3_MOUSE (Q8BYM5) Neuroligin 3 precursor (Gliotactin homolog) 35 1.4
NLG3_HUMAN (Q9NZ94) Neuroligin 3 precursor (Gliotactin homolog) 35 1.4
PCP_BACCR (Q81BT3) Pyrrolidone-carboxylate peptidase (EC 3.4.19.... 34 3.2
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 42.0 bits (97), Expect = 0.012
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNL-HDVFHV 1292
GD V ++ T G KS KL P F GP+ + ++ G Y + LP + ++ FHV
Sbjct: 1195 GDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHV 1251
Query: 1293 SQLRKY 1298
S L KY
Sbjct: 1252 SHLEKY 1257
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 42.0 bits (97), Expect = 0.012
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNL-HDVFHV 1292
GD V ++ T G KS KL P F GP+ + ++ G Y + LP + ++ FHV
Sbjct: 1195 GDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHV 1251
Query: 1293 SQLRKY 1298
S L KY
Sbjct: 1252 SHLEKY 1257
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 42.0 bits (97), Expect = 0.012
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1234 GDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNL-HDVFHV 1292
GD V ++ T G KS KL P F GP+ + ++ G Y + LP + ++ FHV
Sbjct: 1195 GDLVMVK---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHV 1251
Query: 1293 SQLRKY 1298
S L KY
Sbjct: 1252 SHLEKY 1257
>PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 37.4 bits (85), Expect = 0.29
Identities = 34/129 (26%), Positives = 61/129 (46%), Gaps = 18/129 (13%)
Query: 1253 SKKLTPKFIGPYQI-SERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPD--PSHVIHKG 1309
+K L K IG Y+I S++V TV ++ +S L++Y+ + P +I G
Sbjct: 24 AKNLHEKTIGEYKIISKQVPTVFHK--------------SISVLKEYIEELAPEFIICIG 69
Query: 1310 DVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPEL 1369
R ++T+E + + IDD ++ G + V VV G T T +++ ++ E
Sbjct: 70 QAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPTAYWSTLPMKAIVKRLQEEG 129
Query: 1370 FP*GKISRT 1378
P +S+T
Sbjct: 130 IP-ASVSQT 137
>PCP_BACAN (Q81NT5) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 35.8 bits (81), Expect = 0.83
Identities = 33/129 (25%), Positives = 61/129 (46%), Gaps = 18/129 (13%)
Query: 1253 SKKLTPKFIGPYQI-SERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPD--PSHVIHKG 1309
+K L K IG Y+I S++V TV ++ +S L++Y+ + P +I G
Sbjct: 24 AKSLHEKTIGEYKIISKQVPTVFHK--------------SISVLKEYIEELAPEFIICIG 69
Query: 1310 DVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPEL 1369
R ++T+E + + IDD ++ G + V VV G T +++ +++ E
Sbjct: 70 QAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPMKAIVKKLQEEG 129
Query: 1370 FP*GKISRT 1378
P +S+T
Sbjct: 130 IP-ASVSQT 137
>NLG3_RAT (Q62889) Neuroligin 3 precursor (Gliotactin homolog)
Length = 848
Score = 35.0 bits (79), Expect = 1.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1269 RVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDN 1316
R VA+ L PHL NLHD+FH + VP P H + R N
Sbjct: 617 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPPD-TTHSSHITRRPN 663
>NLG3_MOUSE (Q8BYM5) Neuroligin 3 precursor (Gliotactin homolog)
Length = 825
Score = 35.0 bits (79), Expect = 1.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1269 RVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDN 1316
R VA+ L PHL NLHD+FH + VP P H + R N
Sbjct: 594 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPPD-TTHSSHITRRPN 640
>NLG3_HUMAN (Q9NZ94) Neuroligin 3 precursor (Gliotactin homolog)
Length = 848
Score = 35.0 bits (79), Expect = 1.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1269 RVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDVQVRDN 1316
R VA+ L PHL NLHD+FH + VP P H + R N
Sbjct: 617 RATKVAFWKHLVPHLYNLHDMFHYTSTTTKVPPPD-TTHSSHITRRPN 663
>PCP_BACCR (Q81BT3) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
(5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
(PGP-I) (Pyrase)
Length = 215
Score = 33.9 bits (76), Expect = 3.2
Identities = 33/129 (25%), Positives = 61/129 (46%), Gaps = 18/129 (13%)
Query: 1253 SKKLTPKFIGPYQI-SERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPD--PSHVIHKG 1309
+K L K IG Y+I S++V TV ++ +S L++Y+ + P +I G
Sbjct: 24 AKGLHEKTIGEYKIISKQVPTVFHK--------------SISVLKEYIEELAPEIIICIG 69
Query: 1310 DVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPEL 1369
R ++T+E + + IDD ++ G + V VV G T +++ +++ E
Sbjct: 70 QAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGVIAYWSTLPMKAIVKKLREEG 129
Query: 1370 FP*GKISRT 1378
P +S+T
Sbjct: 130 IP-SSVSQT 137
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.369 0.167 0.626
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,616,791
Number of Sequences: 164201
Number of extensions: 4099914
Number of successful extensions: 18035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18017
Number of HSP's gapped (non-prelim): 21
length of query: 1380
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1257
effective length of database: 39,777,331
effective search space: 50000105067
effective search space used: 50000105067
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 72 (32.3 bits)
Medicago: description of AC135234.2