BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135160.3 - phase: 0
(239 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NSR1_YEAST (P27476) Nuclear localization sequence binding protei... 38 0.019
HS9A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86) (Fr... 35 0.21
SYP2_HUMAN (Q9UMS6) Synaptopodin-2 (Myopodin) (Genethonin 2) 34 0.27
NEC1_HUMAN (P29120) Neuroendocrine convertase 1 precursor (EC 3.... 34 0.27
COBQ_VIBPA (Q87HN1) Cobyric acid synthase 34 0.27
YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I 34 0.35
RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4 (Spl... 34 0.35
MPP8_HUMAN (Q99549) M-phase phosphoprotein 8 (Fragment) 33 0.46
RBB2_HUMAN (P29375) Retinoblastoma-binding protein 2 (RBBP-2) 33 0.60
HS9A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86) 33 0.60
HS9A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (Tu... 33 0.60
SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arg... 33 0.79
DNM1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1... 33 0.79
PUR9_BUCBP (Q89B23) Bifunctional purine biosynthesis protein pur... 32 1.0
MMCV_STRLA (Q9X5U0) Sulfate adenylyltransferase subunit 2 (EC 2.... 32 1.0
T2EA_YEAST (P36100) Transcription initiation factor IIE, alpha s... 32 1.3
PCFB_HUMAN (O94913) Pre-mRNA cleavage complex II protein Pcf11 (... 32 1.3
HS9A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86) 32 1.3
HS97_STRFN (Q94738) 97 kDa heat shock protein (Heat shock protei... 32 1.3
SET1_YEAST (P38827) SET domain protein 1 32 1.8
>NSR1_YEAST (P27476) Nuclear localization sequence binding protein
(P67)
Length = 414
Score = 38.1 bits (87), Expect = 0.019
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 24/114 (21%)
Query: 64 SDSPSPNSVLTSSKLRTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRRRRKS 123
S+S S +S + S+ T E + S+ SS + ++E+ TKK++S+ S
Sbjct: 64 SESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSS 123
Query: 124 RSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEGEDEE 177
S S+ E ++ EE D K R+++DAEE EDEE
Sbjct: 124 SSSSDSESEK------------EESNDKK------------RKSEDAEEEEDEE 153
>HS9A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86)
(Fragment)
Length = 719
Score = 34.7 bits (78), Expect = 0.21
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 105 VAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLG 164
+ + K+ Q++ RR K +F G+ FV E DK+
Sbjct: 176 ILHLKEDQTEYLEERRIKEIVKKHSQFI---GYPITLFVEKERDKEVS------------ 220
Query: 165 RENDDAEEGEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKN 207
+D+AEE ED+E +K E SD+KP + + ++ E+K+
Sbjct: 221 --DDEAEEKEDKEEEKEKEEKESDDKPEIEDVGSDEEEEEKKD 261
>SYP2_HUMAN (Q9UMS6) Synaptopodin-2 (Myopodin) (Genethonin 2)
Length = 1093
Score = 34.3 bits (77), Expect = 0.27
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 35/142 (24%)
Query: 91 STGTSSENHHQKEDVAYTKKKQSQSYRRRRR-----KSRSLSELEFKELKG--------F 137
S SSE Q ED ++K S+ ++ R R +S SLSE + KE K
Sbjct: 325 SFAVSSEGTEQGEDPR-SEKDHSRPHKHRARHARLRRSESLSEKQVKEAKSKCKSIALLL 383
Query: 138 MDLG-------FVFSEEDKDSKLVSLIP-GLQRLGRENDDAEEGEDEE----------HK 179
D +F + + ++ +L+ G L RE D+ EEG+ E+
Sbjct: 384 TDAPNPNSKGVLMFKKRRRRARKYTLVSYGTGELEREADEEEEGDKEDTCEVAFLGASES 443
Query: 180 KIDENVLS---DNKPYLSEAWD 198
++DE +LS DN ++ WD
Sbjct: 444 EVDEELLSDVDDNTQVVNFDWD 465
>NEC1_HUMAN (P29120) Neuroendocrine convertase 1 precursor (EC
3.4.21.93) (NEC 1) (PC1) (Prohormone convertase 1)
(Proprotein convertase 1)
Length = 753
Score = 34.3 bits (77), Expect = 0.27
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 21/124 (16%)
Query: 93 GTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKDSK 152
GTSS+ H K+ YT Q+ RR K E + + E K++
Sbjct: 593 GTSSQPEHMKQPRVYTSYNTVQNDRRGVEKMVDPGEEQPTQ------------ENPKENT 640
Query: 153 LVSLIPGLQRLGRENDDAEEGEDEEHK-KIDENVLSDNKPYLSEAWDVFDQRERKNPLVN 211
LVS P +G D+ EEG + ++ ++ S N P Q +K+P
Sbjct: 641 LVSKSPSSSSVGGRRDELEEGAPSQAMLRLLQSAFSKNSPP--------KQSPKKSPSAK 692
Query: 212 WRVP 215
+P
Sbjct: 693 LNIP 696
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase
Length = 483
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/111 (28%), Positives = 48/111 (42%), Gaps = 13/111 (11%)
Query: 126 LSELEFKELKGF-----------MDLGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEGE 174
LSE E +KGF + G + EE ++ ++P L L E +DA +
Sbjct: 185 LSESEQTRVKGFVINRFRGDIRLLQSGLDWLEEKTGKPVLGVLPYLHGLNLEAEDAITAQ 244
Query: 175 DEEHKKIDENVLSDNKPYLSEAWDVFDQRERKNPLVNWRVPDKGSEIDMKD 225
E + ++ NV+ +S D FD R NP +N KG +ID D
Sbjct: 245 QELNSEVKLNVVVPVLTRISNHTD-FDVL-RLNPDINLSYVGKGEKIDKAD 293
>YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I
Length = 860
Score = 33.9 bits (76), Expect = 0.35
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 18/180 (10%)
Query: 60 GSVFSDSPSPNSVLTSSKLRTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRR 119
GS +S P + TS K IP + F ++ + Y K KQ++ +
Sbjct: 666 GSTYSGVPMNSEQFTSKKQEEIPVDELF-----------FYRFFNDKYIKGKQARKTKVD 714
Query: 120 RRKSRSLSELE----FKELKGFMDLGFV---FSEEDKDSKLVSLIPGLQRLGRENDDAEE 172
R + + E E + K +++ F E+ D + + ++ END+
Sbjct: 715 RDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESM 774
Query: 173 GEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKNPLVNWRVPDKGSEIDMKDNLKFWAH 232
+E+ DE LS+ E D D E +N L+ + D EI D+ + +H
Sbjct: 775 ASEEKPMFSDEENLSEIAHSEDEFDDTVDFFEDENDLLPFNETDDEEEIQTVDHSETHSH 834
>RNP4_HUMAN (Q86U06) RNA-binding region containing protein 4
(Splicing factor SF2) (PP239)
Length = 439
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 46 LDVRFYSEQNLSIIGSVFSDSPSPNSVLTSSKLRTIPSEREFGEFSTGTSSENHHQKEDV 105
L+ + E++ V D PS + TS+ GE S S +H++ D
Sbjct: 14 LEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDR 73
Query: 106 AYTKKKQSQSYRRRRRKSRS 125
++ + YRRR +SRS
Sbjct: 74 KRSRSRDRDRYRRRNSRSRS 93
>MPP8_HUMAN (Q99549) M-phase phosphoprotein 8 (Fragment)
Length = 305
Score = 33.5 bits (75), Expect = 0.46
Identities = 31/125 (24%), Positives = 53/125 (41%), Gaps = 18/125 (14%)
Query: 83 SEREFGEFSTGTSSENHHQKEDVA---YTKKKQSQSYRRRRRKSRSLSELEFKELKGFMD 139
S E G +ST ++ E+ K + + Y K+ S + R++ + L L KE++ D
Sbjct: 165 SGEERGLWSTDSAEEDKETKRNESKEKYQKRHDSDKEEKGRKEPKGLKTL--KEIRNAFD 222
Query: 140 LGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEGEDEEHKKIDENVLSDNKPYLSEAWDV 199
L + EE D EN+ E + K ID++ +NK L E +
Sbjct: 223 LFKLTPEEKNDVS-------------ENNRKREEIPLDFKTIDDHKTKENKQSLKERRNT 269
Query: 200 FDQRE 204
D+ +
Sbjct: 270 RDETD 274
>RBB2_HUMAN (P29375) Retinoblastoma-binding protein 2 (RBBP-2)
Length = 1722
Score = 33.1 bits (74), Expect = 0.60
Identities = 28/122 (22%), Positives = 54/122 (43%), Gaps = 8/122 (6%)
Query: 30 EILPQDTNLLLVPTPNLDVRFYSEQNLSIIGSVFSDSPSPNSVLTSSKLRTIPSEREFGE 89
E+ +L+ V PNLD++ E + + S P + + R + ++ E G+
Sbjct: 170 ELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQSESGD 229
Query: 90 FSTGTSSENHH------QKEDVAY-TKKKQSQSYRRRRRKSRS-LSELEFKELKGFMDLG 141
S T + + +A TK K+ + RRR+ +RS ++ ++ KG + +
Sbjct: 230 VSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVN 289
Query: 142 FV 143
FV
Sbjct: 290 FV 291
>HS9A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 33.1 bits (74), Expect = 0.60
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 105 VAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLG 164
+ + K+ Q++ RR K +F G+ FV E DK+
Sbjct: 186 ILHLKEDQTEYLEERRIKEIVKKHSQFI---GYPITLFVEKERDKEVS------------ 230
Query: 165 RENDDAEEGEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKN 207
+D+AEE ED+E +K E S++KP + + ++ E+K+
Sbjct: 231 --DDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEEKKD 271
>HS9A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (Tumor
specific transplantation 86 kDa antigen) (TSTA)
Length = 732
Score = 33.1 bits (74), Expect = 0.60
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 105 VAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLG 164
+ + K+ Q++ RR K +F G+ FV E DK+
Sbjct: 186 ILHLKEDQTEYLEERRIKEIVKKHSQFI---GYPITLFVEKERDKEVS------------ 230
Query: 165 RENDDAEEGEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKN 207
+D+AEE E++E +K E SD+KP + + ++ E+K+
Sbjct: 231 --DDEAEEKEEKEEEKEKEEKESDDKPEIEDVGSDEEEEEKKD 271
>SFRB_HUMAN (Q05519) Splicing factor arginine/serine-rich 11
(Arginine-rich 54 kDa nuclear protein) (p54)
Length = 484
Score = 32.7 bits (73), Expect = 0.79
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 36/133 (27%)
Query: 69 PNSVLTSSKLRTIPSEREFGEFSTGTSSEN----------------HHQKEDVAYTKKKQ 112
P S T+ + R+ ER +GT S H+KE K++
Sbjct: 327 PKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKER 386
Query: 113 SQSYRRRR--RKSRSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLGRENDDA 170
S+ R R +K +S + + +E K SE DKD K V+ R+ D+
Sbjct: 387 SRDERERSTSKKKKSKDKEKDRERK---------SESDKDVKQVT---------RDYDEE 428
Query: 171 EEGEDEEHKKIDE 183
E+G D E +K +E
Sbjct: 429 EQGYDSEKEKKEE 441
>DNM1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC
2.1.1.37) (Dnmt1) (DNA methyltransferase HsaI) (DNA
MTase HsaI) (MCMT) (M.HsaI)
Length = 1616
Score = 32.7 bits (73), Expect = 0.79
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 11/171 (6%)
Query: 66 SPSPNSVLTSSKLRTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRS 125
SPSP S++ TI S G E+ K D + ++ + Q +RRR SR
Sbjct: 152 SPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRE 211
Query: 126 --LSELEFKELKGFMDLGFVFSEEDKDSKLVSLI------PGLQRLGRENDDAEEGEDEE 177
L +E + EE++D K + P ++ +E D E +
Sbjct: 212 RVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQ 271
Query: 178 HKKIDENVLSDNKPYLSEAWDVFDQR--ERKNP-LVNWRVPDKGSEIDMKD 225
+ ++ D K + S+ D+ +R E K P VN ++ D+ E + ++
Sbjct: 272 ADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEE 322
>PUR9_BUCBP (Q89B23) Bifunctional purine biosynthesis protein purH
[Includes: Phosphoribosylaminoimidazolecarboxamide
formyltransferase (EC 2.1.2.3) (AICAR transformylase);
IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
synthetase) (ATIC)]
Length = 529
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 25 PSKVEEILPQDTNLLLVPTPNLDVRFYSEQNLSIIGSVFSDSPS--------------PN 70
P+ V N+L+V PNL +E NL+ ++ S++ N
Sbjct: 131 PAIVRAAAKNYKNVLVVTQPNLYQSIVNEMNLN--NNIISETTKLKFATIAFKHTMNYDN 188
Query: 71 SVLT--SSKLRTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRSLSE 128
++ S K +T+P + + N +K+D+ Y + KQ Q+ +
Sbjct: 189 NIYQYLSKKNKTVPKNTQLQTLLPSHLTINFKKKQDLCYGENKQQQASWYTNTSKNTSGR 248
Query: 129 LEFKELKG 136
++ K+L+G
Sbjct: 249 MKIKQLQG 256
>MMCV_STRLA (Q9X5U0) Sulfate adenylyltransferase subunit 2 (EC
2.7.7.4) (Sulfate adenylate transferase) (SAT)
(ATP-sulfurylase small subunit) (Mitomycin biosynthesis
protein V)
Length = 319
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/101 (27%), Positives = 40/101 (38%), Gaps = 17/101 (16%)
Query: 129 LEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEG---EDEEHKKIDENV 185
LE ++ F+D G + D + +P L +GR DA G DEE + E V
Sbjct: 106 LEVASVQDFIDNGTLRERPDGTRNPLQTVPLLDAIGRHRFDAVFGGGRRDEEKARAKERV 165
Query: 186 LS--------DNKPYLSEAWDVFDQRE------RKNPLVNW 212
S D + E W +++ R R PL NW
Sbjct: 166 FSLRDEFGGWDPRRQRPELWRLYNGRHAPGEHVRVFPLSNW 206
>T2EA_YEAST (P36100) Transcription initiation factor IIE, alpha
subunit (TFIIE-alpha) (Transcription factor A large
subunit) (Factor A 66 kDa subunit)
Length = 482
Score = 32.0 bits (71), Expect = 1.3
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 71 SVLTSSKLRTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRSLSELE 130
S + + L + +E EF T ++ ++ + + A Q SY+ +R+L+E E
Sbjct: 297 STIGKTALGRLDNEEEFDPVVTASAMDSINPDNEPA-----QETSYQN----NRTLTEQE 347
Query: 131 FKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEGEDEEHKKIDENVLSDN 189
+E + L D + L L + E ++ EE E+EE ++ E+V+ DN
Sbjct: 348 MEERENEKTLN------DYYAALAKKQAKLNKEEEEEEEEEEDEEEEEEEEMEDVMDDN 400
>PCFB_HUMAN (O94913) Pre-mRNA cleavage complex II protein Pcf11
(Fragment)
Length = 1654
Score = 32.0 bits (71), Expect = 1.3
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 79 RTIPSEREFGEFSTGTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFM 138
+TIPSE+ SS+ K TKK+ Q + + KS+S S L+ K L
Sbjct: 430 KTIPSEKL-------NSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNK-LSHTK 481
Query: 139 DLGFVFSEEDKDSKLVSLIPGLQRLGRENDDAEEGEDEEHKKIDENVLSDNKPYLSE 195
DL SE + S + P L++ ++ D ++ + +E +K E D SE
Sbjct: 482 DLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSE 538
>HS9A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 105 VAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKDSKLVSLIPGLQRLG 164
+ + K+ Q++ RR K +F G+ FV E DK+
Sbjct: 186 ILHLKEDQTEYMEERRIKEIVKKHSQFI---GYPITLFVEKERDKEVS------------ 230
Query: 165 RENDDAEEGEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKN 207
+D+AEE ED+E +K E D+KP + + ++ E+K+
Sbjct: 231 --DDEAEEKEDKEEEKEKEEKGIDDKPEIEDVGSDEEEEEKKD 271
>HS97_STRFN (Q94738) 97 kDa heat shock protein (Heat shock protein
110)
Length = 886
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 91 STGTSSENHHQKEDVAYTKKKQSQSYRRRRRKSRSLSELEFKELKGFMDLGFVFSEEDKD 150
S G+ S+N + D TKK + + S EL E+ F +K+
Sbjct: 585 SEGSKSDNGSTETDAKATKKNKKTIKTHELTITASTDELSIAEVNNFF---------EKE 635
Query: 151 SKLVSLIPGLQRLGRENDDAEEGEDEEHKKIDENVLSDNKPYLSE 195
K+++ RL +E +DA+ +E + E + + Y+SE
Sbjct: 636 GKMIA----QDRLEKEKNDAKNAVEEYVYDMREKLCDKFEQYVSE 676
>SET1_YEAST (P38827) SET domain protein 1
Length = 1080
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 112 QSQSYRRRRRKSRSLSELEFKELK---GFMDLGFVFSEEDKDSKLVSLIP-GLQRLGREN 167
+S +R S +L K K G + + +EE + L G+ R+ +E+
Sbjct: 614 KSNKRNLKRHNSLALDHTSLKRKKLSNGIKPMAHLLNEETDSKETTPLNDEGITRVSKEH 673
Query: 168 DDAEE------GEDEEHKKIDENVLSDNKPYLSEAWDVFDQRERKNPLVNWRVPDKGSEI 221
D+ +E E+EE + D+ S+++P E+ D PL VPD+
Sbjct: 674 DEEDENMTSSSSEEEEEEAPDKKFKSESEPTTPES----DHLHGIKPL----VPDQNGSS 725
Query: 222 DMKD 225
D+ D
Sbjct: 726 DVLD 729
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,669,483
Number of Sequences: 164201
Number of extensions: 1267034
Number of successful extensions: 4304
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 4247
Number of HSP's gapped (non-prelim): 92
length of query: 239
length of database: 59,974,054
effective HSP length: 107
effective length of query: 132
effective length of database: 42,404,547
effective search space: 5597400204
effective search space used: 5597400204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC135160.3