BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135101.6 + phase: 0 /pseudo
         (1281 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC 2...    34  2.9

>RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC
           2.7.7.6)
          Length = 1024

 Score = 33.9 bits (76), Expect = 2.9
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 562 FKFRGQIMEKSMYQISFNNFVMK*GSNIS*LLLTLLNKME*VKGKIDQSWRWLGVCFIKR 621
           FK    I  K+ Y ISFNN  +K   N +   +  +NK       I Q+     + +I  
Sbjct: 413 FKLLLNIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQN-----IIYIPF 467

Query: 622 NCQRNYGLKPQVPLFSYKIDSLHELCKIKLHLRL 655
           N   ++ ++  +P   Y  DS+  L  IK+H ++
Sbjct: 468 NYLLSF-IENLIPFIHYN-DSIRNLMSIKMHTQI 499


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.361    0.159    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,438,986
Number of Sequences: 164201
Number of extensions: 3722038
Number of successful extensions: 14676
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14675
Number of HSP's gapped (non-prelim): 1
length of query: 1281
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1159
effective length of database: 39,941,532
effective search space: 46292235588
effective search space used: 46292235588
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 72 (32.3 bits)