BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134822.4 - phase: 0
(290 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NUDC_EMENI (P17624) Nuclear movement protein nudC 142 7e-34
ZHX1_RAT (Q8R515) Zinc fingers and homeoboxes protein 1 36 0.13
H1_TIGCA (P35060) Histone H1 36 0.13
TOLA_HAEIN (P44678) TolA protein 35 0.22
RRB1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome... 35 0.22
H12_VOLCA (Q08865) Histone H1-II 35 0.22
GIT7_SCHPO (O59709) Glucose insensitive transcription protein 7 35 0.22
RRB1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome recepto... 34 0.37
TOLA_ECOLI (P19934) TolA protein 34 0.48
MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [... 34 0.48
FEUA_BACSU (P40409) Iron-uptake system binding protein precursor 33 0.63
SSF2_YEAST (Q12153) Ribosome biogenesis protein SSF2 33 0.82
LAP4_DROME (Q7KRY7) LAP4 protein (Scribble protein) (Smell-impai... 33 0.82
CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 ... 33 0.82
TP2B_CHICK (O42131) DNA topoisomerase II, beta isozyme (EC 5.99.... 33 1.1
LEPA_MYCFE (Q8GCP5) GTP-binding protein lepA 33 1.1
CG2B_ARATH (P30183) G2/mitotic-specific cyclin (B-like cyclin) 33 1.1
DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC) 32 1.4
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 32 1.4
PAN1_YEAST (P32521) PAN1 protein 32 1.8
>NUDC_EMENI (P17624) Nuclear movement protein nudC
Length = 198
Score = 142 bits (359), Expect = 7e-34
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 133 YSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKGQ--PPIIDGELYKFIKADEC 190
Y WTQT+++++V +PV K + +KK+ +KV +KG+ IDG+ IK E
Sbjct: 34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSES 93
Query: 191 YWSIEDQST-----VSILLTKHDQMDWWKCLVKGDPLINTQKVEPESSKLGELDSETRMT 245
W++E S VSI L K +QM+WW +V P I+ K+ PE+S L +LD ETR
Sbjct: 94 SWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAM 153
Query: 246 VEKMMFDQRQKSMGLPTSEELEKQEMMKKFMSQHPNMDFSGAKL 289
VEKMM+DQRQK MG PTS+E K +++KKF +HP MDFS AK+
Sbjct: 154 VEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197
>ZHX1_RAT (Q8R515) Zinc fingers and homeoboxes protein 1
Length = 873
Score = 35.8 bits (81), Expect = 0.13
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 16/138 (11%)
Query: 3 IISDYQDETQTP--SSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDS 60
II D DET P +++SQPK S + F P F EK + + F +
Sbjct: 538 IIIDSSDETPEPPAAAASQPKQS-----WNPFPDFAPQKFKEKTAEQLRVLQASFLNSSV 592
Query: 61 AEKMVLSAVRAAKVKKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKD------ 114
L+ +RA + + A + K KA KV ++S VG+ K++
Sbjct: 593 LTDEELNRLRAQTKLTRREI---DAWFTEKNKTKALKDEKVEVDESNVGSSKEEPGENSP 649
Query: 115 GESGLAAPNQGNGMDLEK 132
G+ +A + G G +K
Sbjct: 650 GDEAVAPKSAGTGKICKK 667
>H1_TIGCA (P35060) Histone H1
Length = 181
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/107 (30%), Positives = 43/107 (39%), Gaps = 2/107 (1%)
Query: 15 SSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSAEKMVLSAVRAAKV 74
+ SS P K I + D K F++K + ++ K + AAK
Sbjct: 39 NGSSLPAIKKYIAANYKVDVVKNAHFIKKALKSLVEKKKLVQTKGAGASGSFKLAAAAKA 98
Query: 75 KKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGESGLAA 121
+K KAVA K K A K KAAA K EK +KK AA
Sbjct: 99 EKPKAVA--KPKKAKTPKKKAAATKKPTGEKKAKTPKKKPAAKKPAA 143
>TOLA_HAEIN (P44678) TolA protein
Length = 372
Score = 35.0 bits (79), Expect = 0.22
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 4/75 (5%)
Query: 60 SAEKMVLSAVRAAKVK---KAKAVAAEKAKIASQEKAKAAAGIKVN-DEKSGVGTEKKDG 115
+A+K A AK++ KAKAVA KAK ++ KAKAAA K D ++ TE K
Sbjct: 180 AAQKAKQEAEAKAKLEAEAKAKAVAEAKAKAEAEAKAKAAAEAKAKADAEAKAATEAKRK 239
Query: 116 ESGLAAPNQGNGMDL 130
+ + NG D+
Sbjct: 240 ADQASLDDFLNGGDI 254
>RRB1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome
receptor) (RRp)
Length = 1534
Score = 35.0 bits (79), Expect = 0.22
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 21/215 (9%)
Query: 75 KKAKAVAAEKAK---IASQEKAKAAAGIKVNDEKSGVGTEKKDGESGLAAPNQGNGMDLE 131
KKA VA + K +A Q K A N K G GT + G+ +PNQG +D
Sbjct: 670 KKADLVANQGTKAEGVAGQGKKAEGAP---NQGKKGEGTPNQ-GKKSEGSPNQGKKVDAS 725
Query: 132 ----KYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKGQPPIIDGELYKFIKA 187
K + + +Q N ++ + K K G G PP D LY K
Sbjct: 726 ANQSKRAESAPIQGKNADMVQSQEAPKQEAPAKKKSGSKKKGEPG-PPDSDSPLYLPYKT 784
Query: 188 ------DECYWSIEDQSTVSILLTKHD--QMDWWKCLVKGDPLINTQKVEPESSKLGELD 239
+ E Q + IL K Q W K KGDP+ ++ E KL +
Sbjct: 785 LVSTVGSMVFNEGEAQRLIEILSEKAGVIQDTWHKATQKGDPVAILKRQLEEKEKLLATE 844
Query: 240 SETRMTVEKMMFDQRQKSMGLPTSEELEKQEMMKK 274
E V K + K + ++ + +KK
Sbjct: 845 QED-AAVAKSKLREVNKELAAEKAKAAAGEAKVKK 878
>H12_VOLCA (Q08865) Histone H1-II
Length = 240
Score = 35.0 bits (79), Expect = 0.22
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 58 KDSAEKMVLSAVRAAKVKKAKAVAAEKAKIASQEKAKAAA 97
K + K + +AA KKAKA +KAK A+ +KAKAAA
Sbjct: 179 KKATPKKAAAPKKAAAPKKAKAATPKKAKAATPKKAKAAA 218
>GIT7_SCHPO (O59709) Glucose insensitive transcription protein 7
Length = 379
Score = 35.0 bits (79), Expect = 0.22
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 132 KYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKGQPPIIDGELYKFIKADECY 191
+Y W+QT LN+++ K V ++KN LK+ +K + DG ++ + D Y
Sbjct: 185 RYDWSQTSFSLNIDI-YAKKVKDEDVSLLMEKNTLKIEIK----LEDGSIFSLV-LDPLY 238
Query: 192 WSIEDQ--------STVSILLTKHDQMDWWKCLVKGDPLINTQKVEPESSKLGELDSETR 243
I + S V I L K W+ LVK P N+ V + S T+
Sbjct: 239 EEIVPEKSSFKLFSSKVEITLIKKVSEIKWEALVK-SPANNSVNVYAKDSNHSSASGNTK 297
Query: 244 MTVEKMMFDQRQKSMGLPTSEELEKQEMMKKFMSQHPNMD 283
+ +D K L E + + F + + N D
Sbjct: 298 NKAKD--WDSLAKLADLEEDEPTGEAALANLFQNLYKNAD 335
>RRB1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor
protein) (180 kDa ribosome receptor homolog) (ES/130
related protein)
Length = 1410
Score = 34.3 bits (77), Expect = 0.37
Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 17/208 (8%)
Query: 75 KKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGESGLAAPNQGNGMDLEKYS 134
KKA +VA + K+ A ++ K G+ + G+ AA NQG K +
Sbjct: 548 KKADSVANQGTKVEGITNQGKKAEGSPSEGKKAEGSPNQ-GKKADAAANQG------KKT 600
Query: 135 WTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLKGQPPIIDGELYKFIKA------D 188
+ ++Q N +V + K K G G PP DG LY K
Sbjct: 601 ESASVQGRNTDVAQSPEAPKQEAPAKKKSGSKKKGEPG-PPDADGPLYLPYKTLVSTVGS 659
Query: 189 ECYWSIEDQSTVSILLTKHD--QMDWWKCLVKGDPLINTQKVEPESSKLGELDSETRMTV 246
+ E Q + IL K Q W K KGDP+ ++ E KL + E V
Sbjct: 660 MVFNEGEAQRLIEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATEQED-AAV 718
Query: 247 EKMMFDQRQKSMGLPTSEELEKQEMMKK 274
K + K M ++ + +KK
Sbjct: 719 AKSKLRELNKEMAAEKAKAAAGEAKVKK 746
>TOLA_ECOLI (P19934) TolA protein
Length = 421
Score = 33.9 bits (76), Expect = 0.48
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 3/71 (4%)
Query: 57 DKDSAEKMVLSAVRAAKVKKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGE 116
DK +AEK A K A+ AA+K A++ A+ AA K E + E G+
Sbjct: 246 DKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGK 305
Query: 117 SGLAAPNQGNG 127
+ AP G G
Sbjct: 306 N---APKTGGG 313
>MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B)
[Contains: MAP1 light chain LC1]
Length = 2468
Score = 33.9 bits (76), Expect = 0.48
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 2 AIISDYQDETQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSA 61
A+ D +++T+T ++ K S P + SKP A K KES+D + ++
Sbjct: 2234 ALKKDLKEKTKTKKPGTKTKSSS--PVKKSDGKSKPLAASPKPAGL--KESSDKVSRVAS 2289
Query: 62 EKMVLSAVRAAK---VKKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGESG 118
K S +AAK + KA E+ ++ A A+A +G GT K S
Sbjct: 2290 PKKKESVEKAAKPTTTPEVKAARGEEKDKETKNAANASASKSAKTATAGPGTTKTTKSSA 2349
Query: 119 L 119
+
Sbjct: 2350 V 2350
>FEUA_BACSU (P40409) Iron-uptake system binding protein precursor
Length = 317
Score = 33.5 bits (75), Expect = 0.63
Identities = 37/159 (23%), Positives = 59/159 (36%), Gaps = 19/159 (11%)
Query: 3 IISDYQDETQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDF----FDK 58
+ D D+ + +P K + + T F EK I+ T
Sbjct: 89 MFKDITDKAEPTGEKMEPNIEKILEMKPDVILAS-TKFPEKTLQKISTAGTTIPVSHISS 147
Query: 59 DSAEKMVLSAVRAAKVKKAKAVAAE--------KAKIASQEKAKAAAGIKVNDEKSGVGT 110
+ E M+L A K KKAK + A+ K KI + K A I++ +
Sbjct: 148 NWKENMMLLAQLTGKEKKAKKIIADYEQDLKEIKTKINDKAKDSKALVIRIRQGNIYIYP 207
Query: 111 EKKD------GESGLAAPNQGNGMDLEKYSWTQTLQELN 143
E+ G+ GL APN+ ++ S + L E+N
Sbjct: 208 EQVYFNSTLYGDLGLKAPNEVKAAKAQELSSLEKLSEMN 246
>SSF2_YEAST (Q12153) Ribosome biogenesis protein SSF2
Length = 453
Score = 33.1 bits (74), Expect = 0.82
Identities = 36/139 (25%), Positives = 55/139 (38%), Gaps = 15/139 (10%)
Query: 6 DYQDETQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKEST---DFFDKDSAE 62
D + E PS +SQP P K + P + T L K+ D I +F K S E
Sbjct: 305 DVEMEEPKPSENSQPTPRKKAIKLTELGP-RLTLKLVKIEDGICSGKVLHHEFVQKSSEE 363
Query: 63 KMVLSAVRAAKV-------KKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDG 115
L AAK+ K+ + A+K + +K + K E+ G G G
Sbjct: 364 IKALEKRHAAKMRLKEQRRKEQEENIAKKKAVKDAKKQRKLERRKARAEEQGEG----QG 419
Query: 116 ESGLAAPNQGNGMDLEKYS 134
+ G + + + + E YS
Sbjct: 420 KDGAMSDDGSSSSEDEHYS 438
>LAP4_DROME (Q7KRY7) LAP4 protein (Scribble protein) (Smell-impaired
protein)
Length = 1851
Score = 33.1 bits (74), Expect = 0.82
Identities = 31/120 (25%), Positives = 56/120 (45%), Gaps = 14/120 (11%)
Query: 11 TQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSAEKMVLSAVR 70
T+ P S S K S+ D KPT +KVF F++K+ + ++ K ++ +R
Sbjct: 1719 TKVPKSVSD---KKRFFESAMEDQHKPTQKTDKVFSFLSKDEVEKLRQEEERK--IATLR 1773
Query: 71 AAKVKKAKAVAAEKA-KIASQEKAKAAAGIKVNDEKSGVGTEKKDGESGLAAPNQGNGMD 129
K + A + K A+Q++ K+ ++ SG + D E G+A +G+ +D
Sbjct: 1774 RDKNSRLLDAANDNIDKDAAQQRTKSN-----SNSSSGDDNDDSDQEEGIA---RGDSVD 1825
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1
(CHD-1)
Length = 1709
Score = 33.1 bits (74), Expect = 0.82
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 33 DPSK-PTAF-LEKVFDFIAKESTDFFDKDSAEKMVLSAVRAAKVKKAKAVAAEKAKIASQ 90
DP K P A L+ D++ K +D A+K LS ++K +KA+A
Sbjct: 1292 DPDKKPQAKQLQTRADYLIK----LLSRDLAKKEALSGAGSSKRRKARA----------- 1336
Query: 91 EKAKAAAGIKVNDE----KSGVGTEKKDGESGLAAPNQGNGMDLEKYSWTQTLQELNVNV 146
+K KA IKV +E S + +EK D + + ++ +G + K S ++ + V++
Sbjct: 1337 KKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGRERSKKS---SVSDAPVHI 1393
Query: 147 -----PVPNGTKS------GFVICEIKKNHLKVGLK--GQPPIIDGELYKFIKADECYWS 193
PVP +S F IC+ + +K LK +P E + +C
Sbjct: 1394 TASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIK 1453
Query: 194 IEDQSTVSIL-LTKHDQMDWWK 214
I D T + T +Q+ W+
Sbjct: 1454 IGDHITECLKEYTNPEQIKQWR 1475
>TP2B_CHICK (O42131) DNA topoisomerase II, beta isozyme (EC 5.99.1.3)
Length = 1627
Score = 32.7 bits (73), Expect = 1.1
Identities = 45/169 (26%), Positives = 63/169 (36%), Gaps = 24/169 (14%)
Query: 3 IISDYQDETQTPSSSSQP-----KPSKTIPFSSTFDPSKPTAFLEKVFDFIA-----KES 52
+I+D +DE PS S + P K+ P K +F F + +
Sbjct: 1408 VINDREDEF-VPSDSVEKDEYDFSPVKSKPSPEKMSQEKKNQDFGNIFSFPSYSQKTDDD 1466
Query: 53 TDFFDKDSAEKM-VLSAVRAAKVKK---AKAVAAEKAKIASQEKAKAAAGIKV-----ND 103
T D D + V S+ A K + +K VAA+KAK+ K K A K +D
Sbjct: 1467 TTKLDSDEEDSTPVFSSPFAPKQTEKMLSKTVAAKKAKVDVPPKPKRAPKAKKMETVNSD 1526
Query: 104 EKSGVGTEKKDGESGLAAPNQGNGMDLEKYSWTQTLQELNVNVPVPNGT 152
S G KK A +G G K S ++ E N P T
Sbjct: 1527 SDSEFGIPKKTA----APKGKGRGAKKRKTSGSENEGEYNPGKKAPKST 1571
>LEPA_MYCFE (Q8GCP5) GTP-binding protein lepA
Length = 599
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 2 AIISDYQDETQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSA 61
A+++ + P + KP K + F S FD + L ++F+ K +F +
Sbjct: 168 AVLAAIEKYIPAPKDADDSKPLKALIFDSYFDEYRGVVMLIRIFEGELKVGDEFMFMSNG 227
Query: 62 EKMVLS--AVRAAKVKKAKAVAA 82
++ +S VR+ K K K + A
Sbjct: 228 QRYFVSELGVRSPKETKKKRLEA 250
>CG2B_ARATH (P30183) G2/mitotic-specific cyclin (B-like cyclin)
Length = 428
Score = 32.7 bits (73), Expect = 1.1
Identities = 31/111 (27%), Positives = 46/111 (40%), Gaps = 9/111 (8%)
Query: 11 TQTPSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSAEKMVLSAVR 70
+Q P+ + K + + K A KV D I S DS E++ L A R
Sbjct: 61 SQNPTLLVEDNLKKPVVKRNAVPKPKKVAGKPKVVDVIEISS------DSDEELGLVAAR 114
Query: 71 AAKVKKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGESGLAA 121
K K KA A ++KAA G++ ++ V + D E+ LAA
Sbjct: 115 EKKATKKKATTYTSVLTA---RSKAACGLEKKQKEKIVDIDSADVENDLAA 162
>DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)
Length = 4092
Score = 32.3 bits (72), Expect = 1.4
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 166 LKVGLKGQPP--IIDG--ELYKFIKADECYWSI-EDQSTVSILLTKHDQMDWWKCLVKGD 220
+KVG+ + P IDG L K + A Y + E+Q V++ L K ++ ++K +
Sbjct: 2980 MKVGVNPRSPGYFIDGLRALVKLVTAK--YQDLQENQRFVNVGLEKLNES-----VLKVN 3032
Query: 221 PLINTQKVEPESSKLGELDSETRMTVEKMMFDQRQKSMGLPTSEELEK 268
L T + +S++L E + E R T++KM+ +Q + +EE++K
Sbjct: 3033 ELNKT--LSKKSTELTEKEKEARSTLDKMLMEQNESERKQEATEEIKK 3078
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 32.3 bits (72), Expect = 1.4
Identities = 63/290 (21%), Positives = 114/290 (38%), Gaps = 31/290 (10%)
Query: 5 SDYQDETQTPSSSSQPKPSKTIPFSSTFDPS----KPTAFLEKVFDFIAKESTDFFDKDS 60
S+ +E + S + K + T + S KP+ +K AK ++ +D
Sbjct: 156 SEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDE 215
Query: 61 AEKMVLSAVRAAKVKKAKAV---------AAEKAKIASQEKAKAAAGIKVNDEKSGVGTE 111
E V+ +K K K V A EK K ++++K ++ EKS E
Sbjct: 216 KE------VKKSKKKSKKVVKKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEE 269
Query: 112 KKDGESGLAAPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSGFVICEIKKNHLKVGLK 171
+K+ P + + ++K S + +E +V V +P K G V I + + K
Sbjct: 270 EKESS---PKPKKKKPLAVKKLSSDEESEESDVEV-LPQKKKRGAVTL-ISDSEDEKDQK 324
Query: 172 GQPPIIDGE---LYKFIKADECYWSIEDQSTVSILLTKHDQMDWWKCLVKGDPLINTQKV 228
+ D E K K E S D S SI + + + K ++++ K+
Sbjct: 325 SESEASDVEEKVSKKKAKKQESSESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKL 384
Query: 229 EPESSKLGELDSETRMTVEKMMFDQRQKSMGLPTSEELEKQEMMKKFMSQ 278
+ E+ + E R +EK ++++ G+ E + EM+ SQ
Sbjct: 385 QKETIDAERAEKERRKRLEK----KQKEFNGIVLEEGEDLTEMLTGTSSQ 430
>PAN1_YEAST (P32521) PAN1 protein
Length = 1480
Score = 32.0 bits (71), Expect = 1.8
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 14 PSSSSQPKPSKTIPFSSTFDPSKPTAFLEKVFDFIAKESTDFFDKDSAEKMVLSAVRAAK 73
P+ QP T P T P +PT ++ V++ AK+ +D D+D EK + ++ K
Sbjct: 1103 PTQPVQP----TQPVQPT-QPVQPTQPVQNVYN--AKQESDDEDEDDEEKRLQEELKRLK 1155
Query: 74 VKKAKAVAAEKAKIASQEKAKAAAGIKVNDEKSGVGTEKKDGE 116
+KK A +EK AA ++ D ++ E+ +G+
Sbjct: 1156 LKKK----------ADKEKRLAALRKQIEDAQNESDEEETNGK 1188
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.127 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,706,977
Number of Sequences: 164201
Number of extensions: 1428560
Number of successful extensions: 4457
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 4352
Number of HSP's gapped (non-prelim): 134
length of query: 290
length of database: 59,974,054
effective HSP length: 109
effective length of query: 181
effective length of database: 42,076,145
effective search space: 7615782245
effective search space used: 7615782245
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC134822.4