BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC134322.2 + phase: 0 /pseudo
         (840 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YM53_MYCBO (P64956) Hypothetical protein Mb2253c                       50  2e-05
YM28_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287                50  2e-05
GLSF_ANTSP (Q06434) Ferredoxin-dependent glutamate synthase (EC ...    36  0.37
CAIB_SHIFL (P59394) Crotonobetainyl-CoA:carnitine CoA-transferas...    33  4.1
CAIB_ECOLI (P31572) Crotonobetainyl-CoA:carnitine CoA-transferas...    33  4.1
CAIB_ECOL6 (Q8FLA4) Crotonobetainyl-CoA:carnitine CoA-transferas...    33  4.1
CAIB_ECO57 (Q8XA32) Crotonobetainyl-CoA:carnitine CoA-transferas...    33  4.1
YPEP_BACSU (P54164) Hypothetical protein ypeP                          32  7.0
CAIB_SALTY (Q8ZRX3) Crotonobetainyl-CoA:carnitine CoA-transferas...    32  9.1
CAIB_SALTI (Q8Z9L3) Crotonobetainyl-CoA:carnitine CoA-transferas...    32  9.1

>YM53_MYCBO (P64956) Hypothetical protein Mb2253c
          Length = 364

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 668 KWVLSVDGSSNLKGSGAG---VTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLAL 724
           K V+  DG S      AG   V     +  ++ +S +   +++NN AEY  L AG+  A+
Sbjct: 2   KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAV 61

Query: 725 KVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQKFVSFKY 774
           K+   E     DS+LV  Q++G ++ K P LL        L  +F    Y
Sbjct: 62  KLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINY 111


>YM28_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287
          Length = 364

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 668 KWVLSVDGSSNLKGSGAG---VTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLAL 724
           K V+  DG S      AG   V     +  ++ +S +   +++NN AEY  L AG+  A+
Sbjct: 2   KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAV 61

Query: 725 KVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMYLTQKFVSFKY 774
           K+   E     DS+LV  Q++G ++ K P LL        L  +F    Y
Sbjct: 62  KLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINY 111


>GLSF_ANTSP (Q06434) Ferredoxin-dependent glutamate synthase (EC
           1.4.7.1) (Fd-GOGAT)
          Length = 1536

 Score = 36.2 bits (82), Expect = 0.37
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 675 GSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALK 725
           G+ N+ G GAGVT++ P+ + I + + F  K  +NQ+    L  G+R+ L+
Sbjct: 61  GADNISGDGAGVTIQIPWDIFISEGINFLPKLQSNQS---ILNYGVRMILR 108


>CAIB_SHIFL (P59394) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  AE +  FA + +A   V+   E +S+ Q V R+    
Sbjct: 284 IECPYGPLVEEKLD-AWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


>CAIB_ECOLI (P31572) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  AE +  FA + +A   V+   E +S+ Q V R+    
Sbjct: 284 IECPYGPLVEEKLD-AWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


>CAIB_ECOL6 (Q8FLA4) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  AE +  FA + +A   V+   E +S+ Q V R+    
Sbjct: 284 IECPYGPLVEEKLD-AWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


>CAIB_ECO57 (Q8XA32) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  AE +  FA + +A   V+   E +S+ Q V R+    
Sbjct: 284 IECPYGPLVEEKLD-AWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


>YPEP_BACSU (P54164) Hypothetical protein ypeP
          Length = 120

 Score = 32.0 bits (71), Expect = 7.0
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 707 SNNQAEYEALFAGMR--LALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVMY 764
           +NN+AEY AL+  +R    L      +  K DS +V  Q+ G++   DP    +L+ +  
Sbjct: 11  TNNEAEYAALYEAIREVRELGASRNSITIKGDSLVVLNQLDGSWPCYDPSHNEWLDKIEA 70

Query: 765 LTQ 767
           L +
Sbjct: 71  LLE 73


>CAIB_SALTY (Q8ZRX3) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  A+ +A FA + +A   V+   E + + Q V R+    
Sbjct: 284 VECPYGPLVEEKLD-AWLATHTIADVQARFAELNIACAKVLTIPELEGNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


>CAIB_SALTI (Q8Z9L3) Crotonobetainyl-CoA:carnitine CoA-transferase
           (EC 2.8.3.-)
          Length = 405

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 1/65 (1%)

Query: 688 LEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVVKELEAKSDSQLVFRQVTGN 747
           +E PYG L+E+ L   + +++  A+ +A FA + +A   V+   E + + Q V R+    
Sbjct: 284 VECPYGPLVEEKLD-AWLAAHTIADVQARFAELNIACAKVLTIPELEGNPQYVARESITQ 342

Query: 748 FQTKD 752
           +QT D
Sbjct: 343 WQTMD 347


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.358    0.156    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,403,850
Number of Sequences: 164201
Number of extensions: 2655390
Number of successful extensions: 9801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9797
Number of HSP's gapped (non-prelim): 10
length of query: 840
length of database: 59,974,054
effective HSP length: 119
effective length of query: 721
effective length of database: 40,434,135
effective search space: 29153011335
effective search space used: 29153011335
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 70 (31.6 bits)