BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.5 + phase: 0
(162 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 90 3e-18
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 40 0.002
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 39 0.004
GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 39 0.005
GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp... 39 0.005
GRP2_NICSY (P27484) Glycine-rich protein 2 37 0.015
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 37 0.015
GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17; ... 37 0.015
XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells h... 37 0.019
GIS2_YEAST (P53849) Zinc-finger protein GIS2 37 0.025
GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 36 0.033
GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 36 0.033
Z624_HUMAN (Q9P2J8) Zinc finger protein 624 36 0.043
GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp... 34 0.13
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 34 0.13
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 34 0.13
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 34 0.13
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 34 0.13
GAG_SIVA1 (P27972) Gag polyprotein [Contains: Core protein p17; ... 34 0.16
COAT_SOCMV (P15627) Coat protein 34 0.16
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 89.7 bits (221), Expect = 3e-18
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
+ L FN ++ L N+ V++E+EDKAILLL +LP S+++ T+L+GK T+ L++V +
Sbjct: 119 LSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTS 177
Query: 61 AL------RTKELTKSKDLRADEDNEGLSVSKGNGGGRGNRGSSKSGNKDKYK-CFKCHK 113
AL R K + + L + S N G G RG SK+ +K + + C+ C++
Sbjct: 178 ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 237
Query: 114 LGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
GHFKRDCP + + ++ D A +V
Sbjct: 238 PGHFKRDCPNPRKGKGETSGQKNDDNTAAMV 268
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
protein)
Length = 271
Score = 40.0 bits (92), Expect = 0.002
Identities = 22/77 (28%), Positives = 32/77 (40%), Gaps = 6/77 (7%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDN---ESSAQVVSEEYGDAGA 141
S+G G + R ++ G C+KC GH RDCP + + GDAG
Sbjct: 119 SRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Query: 142 LVVSCWEEDEGEGSHLG 158
+ C G+G + G
Sbjct: 179 ISRDC---PNGQGGYSG 192
Score = 38.1 bits (87), Expect = 0.009
Identities = 16/45 (35%), Positives = 24/45 (52%)
Query: 97 SSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGA 141
S+K G ++C+KC + GH RDCP S ++ G +GA
Sbjct: 88 SAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGA 132
Score = 34.7 bits (78), Expect = 0.096
Identities = 20/63 (31%), Positives = 25/63 (38%), Gaps = 2/63 (3%)
Query: 98 SKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEY--GDAGALVVSCWEEDEGEGS 155
++SG CF+C + GH RDCP + A E Y G G L C G
Sbjct: 62 ARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRG 121
Query: 156 HLG 158
G
Sbjct: 122 GYG 124
Score = 33.9 bits (76), Expect = 0.16
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 12/65 (18%)
Query: 96 GSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDEGEGS 155
GS+ SG++ C+KC K GH R+CPE S G G +C++ GE
Sbjct: 215 GSTGSGDR---ACYKCGKPGHISRECPEAGGSYG-------GSRGGGDRTCYK--CGEAG 262
Query: 156 HLGID 160
H+ D
Sbjct: 263 HISRD 267
Score = 33.1 bits (74), Expect = 0.28
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Query: 97 SSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSA--QVVSEEYGDAGALVVSC 146
+ G++ CF+C + GH R+CP + S A + G+AG + C
Sbjct: 34 ADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC 85
Score = 32.7 bits (73), Expect = 0.36
Identities = 20/67 (29%), Positives = 29/67 (42%), Gaps = 4/67 (5%)
Query: 93 GNRGSSKSGNKDKYKCFKCHKLGHFKRDCPE-DNESSAQVVSEEYGDAGALVVSCWEEDE 151
G G S +G++ KC+KC + GH R+CP + S + G G + C E
Sbjct: 186 GQGGYSGAGDR---KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGG 242
Query: 152 GEGSHLG 158
G G
Sbjct: 243 SYGGSRG 249
Score = 32.0 bits (71), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 93 GNRGSSKSGNKDKYKCFKCHKLGHFKRDCP 122
G+ G S+ G C+KC + GH RDCP
Sbjct: 242 GSYGGSRGGGDRT--CYKCGEAGHISRDCP 269
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 39.3 bits (90), Expect = 0.004
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 7 FNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKE 66
F++++ +L ++E+ DK LL LP ++ + E +TL V+ L +E
Sbjct: 121 FDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQE 180
Query: 67 LTKSKDLRADEDNEGLS--VSKGNGGGRGNRGSS---------KSGNKDKYKCFKCHKLG 115
+ K K+ D + ++ V N + N + K +K K KC C + G
Sbjct: 181 I-KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREG 239
Query: 116 HFKRDC 121
H K+DC
Sbjct: 240 HIKKDC 245
>GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)
Length = 201
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/41 (41%), Positives = 19/41 (45%)
Query: 81 GLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDC 121
G S G GGGR G G C+ C + GHF RDC
Sbjct: 155 GGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 36.2 bits (82), Expect = 0.033
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 89 GGGRGNRGSS-KSGNKDKYKCFKCHKLGHFKRDCPE 123
GGG G RGS + G CFKC + GH R+C +
Sbjct: 118 GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQ 153
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10;
Phosphorylated protein pp21; Protein p3; Protein p8;
Major core protein p27; Nucleic acid binding protein
p14]
Length = 591
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 84 VSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNES 127
V + GGG+G +GS CF C K GH KRDC E+ S
Sbjct: 509 VKQTYGGGKGGQGSKGP------VCFSCGKTGHIKRDCKEEKGS 546
>GRP2_NICSY (P27484) Glycine-rich protein 2
Length = 214
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/37 (45%), Positives = 19/37 (50%), Gaps = 3/37 (8%)
Query: 87 GNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPE 123
G GGG G G G CFKC + GHF RDC +
Sbjct: 141 GYGGGGGYGGGGSGGGSG---CFKCGESGHFARDCSQ 174
Score = 35.0 bits (79), Expect = 0.073
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDC 121
S+ GGG G R G C+KC + GHF R+C
Sbjct: 173 SQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
(Germline helicase-2)
Length = 974
Score = 37.4 bits (85), Expect = 0.015
Identities = 20/65 (30%), Positives = 25/65 (37%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVV 144
S GN G G+ G + + CF C + GH DCPE + V G
Sbjct: 236 SGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSR 295
Query: 145 SCWEE 149
C EE
Sbjct: 296 DCPEE 300
Score = 37.0 bits (84), Expect = 0.019
Identities = 21/75 (28%), Positives = 27/75 (36%)
Query: 87 GNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSC 146
GN G G+ G + + CF C + GH DCPE + V G C
Sbjct: 352 GNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Query: 147 WEEDEGEGSHLGIDS 161
EE + G S
Sbjct: 412 PEERKPREGRNGFTS 426
Score = 34.3 bits (77), Expect = 0.13
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 87 GNGGGRGNRGSSKSGNKDK---YKCFKCHKLGHFKRDCPE 123
GN GG G + GN ++ KCF C GH +CPE
Sbjct: 431 GNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 31.6 bits (70), Expect = 0.81
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 90 GGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNE 126
G R N ++ C+ C + GH RDCPE+ +
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
>GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 513
Score = 37.4 bits (85), Expect = 0.015
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 88 NGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCW 147
NG G K G + KCF C K GH +R+C ++ Q+ + G G + C
Sbjct: 372 NGQNMVQVGPQKKGPRGPLKCFNCGKFGHMQREC----KAPRQIKCFKCGKIGHMAKDC- 426
Query: 148 EEDEGEGSHLG 158
G+ + LG
Sbjct: 427 --KNGQANFLG 435
>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells
homolog (Xeroderma pigmentosum group C complementing
protein homolog) (p125)
Length = 930
Score = 37.0 bits (84), Expect = 0.019
Identities = 35/135 (25%), Positives = 54/135 (39%), Gaps = 17/135 (12%)
Query: 28 ILLLCALPRSFESFKDTMLYGKEGTVTLEEVQAALRTKELTKSKDLRADEDNEGLSVSKG 87
I L A+ + +S K+T + G G+ L K T R ++ E LS +G
Sbjct: 318 IPLKSAVTKGRKSSKETSVEGPGGSSELSSNSPESHNKPTTS----RRIKEEETLSEGRG 373
Query: 88 NGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAG--ALVVS 145
RG RG+ +G++ + K C E E+ +V + A VS
Sbjct: 374 KATARGKRGTGTAGSRQRR-----------KPSCSEGEEAEQKVQGRPHARKRRVAAKVS 422
Query: 146 CWEEDEGEGSHLGID 160
EE E +G+ G D
Sbjct: 423 YKEESESDGAGSGSD 437
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 36.6 bits (83), Expect = 0.025
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 2/46 (4%)
Query: 107 KCFKCHKLGHFKRDCPEDNESS--AQVVSEEYGDAGALVVSCWEED 150
+CF C++ GH R+CPE ++S ++V + G + C +ED
Sbjct: 66 RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKED 111
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 32 CALPRSFESFKDTMLYGKEGTVTLE-EVQAALRTKEL----TKSKDLRADEDNEGLSVSK 86
C +PR+ E FK G+ G V E VQ + + + + +S K
Sbjct: 38 CTMPRTVE-FKQCYNCGETGHVRSECTVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYK 96
Query: 87 GNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPED 124
G + K KC+ C + GH RDC D
Sbjct: 97 CGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 28.5 bits (62), Expect = 6.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 93 GNRGSSKSGNKDKYKCFKCHKLGHFKRDCPE 123
G G ++ C+ C++ GH +DCP+
Sbjct: 122 GQAGHMSRDCQNDRLCYNCNETGHISKDCPK 152
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-)
(Germline helicase-1)
Length = 763
Score = 36.2 bits (82), Expect = 0.033
Identities = 23/70 (32%), Positives = 26/70 (36%), Gaps = 5/70 (7%)
Query: 81 GLSVSKGNGG-GRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDA 139
G S GN G G G G + N CF C + GH DCPE + V
Sbjct: 136 GGSFGGGNSGFGEGGHGGGERNNN----CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQP 191
Query: 140 GALVVSCWEE 149
G C EE
Sbjct: 192 GHTSRECTEE 201
Score = 33.1 bits (74), Expect = 0.28
Identities = 15/43 (34%), Positives = 19/43 (43%)
Query: 81 GLSVSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPE 123
G + GN G G+ G + KCF C GH +CPE
Sbjct: 217 GFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains:
Core protein p10; Core phosphoprotein p18; Core protein
p12; Core protein p27; Core protein p14; Core protein
p4]
Length = 654
Score = 36.2 bits (82), Expect = 0.033
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 102 NKDKYKCFKCHKLGHFKRDCPEDNESSAQ 130
NKD+ CFKC K GHF +DC + + + +
Sbjct: 540 NKDRGGCFKCGKKGHFAKDCRDHSNKNPE 568
>Z624_HUMAN (Q9P2J8) Zinc finger protein 624
Length = 739
Score = 35.8 bits (81), Expect = 0.043
Identities = 35/126 (27%), Positives = 57/126 (44%), Gaps = 10/126 (7%)
Query: 1 MEQLAEFNKILDDLENIEVQLEDEDKAILLLCALPRSFESFKDTMLYGKEGTVTLEEVQA 60
ME L ++N + L+N Q + I+ L P S F+ + E + EE+ +
Sbjct: 39 MEGLWKWNDRILRLQNN--QENHLSQRIIPLKKTPTSQRGFRFESILIPEPGIATEELHS 96
Query: 61 ALRTKELTKSKDLRADEDNE-GLSVSKGNGGGRGNRGSS------KSGNKDK-YKCFKCH 112
+T+E +++L D G + K G + R +S KS NK+K YKC C
Sbjct: 97 RCQTQEENFTENLNLITDTHLGKIICKEMKGSKAIRQTSELTLGKKSNNKEKPYKCSTCE 156
Query: 113 KLGHFK 118
K H++
Sbjct: 157 KAFHYR 162
>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10;
Phosphorylated protein pp21; Protein p3; Protein p8;
Major core protein p27; Nucleic acid binding protein
p14]
Length = 591
Score = 34.3 bits (77), Expect = 0.13
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 84 VSKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPEDNES 127
V + GGG+G +G+ CF C K GH ++DC ++ S
Sbjct: 509 VKQTYGGGKGGQGAEGP------VCFSCGKTGHIRKDCKDEKGS 546
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 34.3 bits (77), Expect = 0.13
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 104 DKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHL 157
D+ KC+ C + GH ++DC +V G+ G + ++C + E GE HL
Sbjct: 115 DEQKCYSCGEFGHIQKDC-------TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHL 167
Score = 30.0 bits (66), Expect = 2.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 107 KCFKCHKLGHFKRDCPEDNESSAQVVSEEYG----DAGALVVSCWEEDE----GEGSHLG 158
+CFKC + GH+ R+CP + S G D G VS D GE HL
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 159 ID 160
D
Sbjct: 65 KD 66
Score = 29.6 bits (65), Expect = 3.1
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDC 121
S+G GG +RG + C++C + GH +DC
Sbjct: 31 SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67
Score = 28.1 bits (61), Expect = 9.0
Identities = 18/59 (30%), Positives = 22/59 (36%), Gaps = 7/59 (11%)
Query: 108 CFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHLGID 160
C+ C + GH +DC E Q G G L C DE GE H+ D
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQ-CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 131
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 34.3 bits (77), Expect = 0.13
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 104 DKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHL 157
D+ KC+ C + GH ++DC +V G+ G + ++C + E GE HL
Sbjct: 116 DEQKCYSCGEFGHIQKDC-------TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHL 168
Score = 30.4 bits (67), Expect = 1.8
Identities = 22/83 (26%), Positives = 31/83 (36%), Gaps = 29/83 (34%)
Query: 107 KCFKCHKLGHFKRDCPEDN-----------------------ESSAQVVSEEYGDAGALV 143
+CFKC + GH+ R+CP SS + G++G L
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 144 VSC-WEEDE-----GEGSHLGID 160
C +EDE G G H+ D
Sbjct: 65 KDCDLQEDEACYNCGRGGHIAKD 87
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 34.3 bits (77), Expect = 0.13
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 104 DKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHL 157
D+ KC+ C + GH ++DC +V G+ G + ++C + E GE HL
Sbjct: 115 DEQKCYSCGEFGHIQKDC-------TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHL 167
Score = 30.0 bits (66), Expect = 2.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 107 KCFKCHKLGHFKRDCPEDNESSAQVVSEEYG----DAGALVVSCWEEDE----GEGSHLG 158
+CFKC + GH+ R+CP + S G D G VS D GE HL
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 159 ID 160
D
Sbjct: 65 KD 66
Score = 29.6 bits (65), Expect = 3.1
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 85 SKGNGGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDC 121
S+G GG +RG + C++C + GH +DC
Sbjct: 31 SRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67
Score = 28.1 bits (61), Expect = 9.0
Identities = 18/59 (30%), Positives = 22/59 (36%), Gaps = 7/59 (11%)
Query: 108 CFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHLGID 160
C+ C + GH +DC E Q G G L C DE GE H+ D
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQ-CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 131
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 34.3 bits (77), Expect = 0.13
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 104 DKYKCFKCHKLGHFKRDCPEDNESSAQVVSEEYGDAGALVVSCWEEDE------GEGSHL 157
D+ KC+ C + GH ++DC +V G+ G + ++C + E GE HL
Sbjct: 110 DEQKCYSCGEFGHIQKDC-------TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHL 162
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 23/77 (29%)
Query: 107 KCFKCHKLGHFKRDCP-----------------EDNESSAQVVSEEYGDAGALVVSC-WE 148
+CFKC + GH+ R+CP + SS + G++G L C +
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64
Query: 149 EDE-----GEGSHLGID 160
ED+ G G H+ D
Sbjct: 65 EDKACYNCGRGGHIAKD 81
>GAG_SIVA1 (P27972) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 520
Score = 33.9 bits (76), Expect = 0.16
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 7/35 (20%)
Query: 89 GGGRGNRGSSKSGNKDKYKCFKCHKLGHFKRDCPE 123
GGGRG + KC+ C K GH +R CPE
Sbjct: 388 GGGRGRP-------RPPPKCYNCGKFGHMQRQCPE 415
>COAT_SOCMV (P15627) Coat protein
Length = 441
Score = 33.9 bits (76), Expect = 0.16
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 103 KDKYKCFKCHKLGHFKRDCPEDNESSAQVV 132
K K +C+ CH+ GH+ +CP+ + AQ +
Sbjct: 378 KKKCQCWLCHEEGHYANECPKKDNKKAQTL 407
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,596,984
Number of Sequences: 164201
Number of extensions: 907567
Number of successful extensions: 3524
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 3334
Number of HSP's gapped (non-prelim): 228
length of query: 162
length of database: 59,974,054
effective HSP length: 102
effective length of query: 60
effective length of database: 43,225,552
effective search space: 2593533120
effective search space used: 2593533120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC134049.5