BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134049.15 + phase: 0 /pseudo
(300 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 51 3e-06
YHD5_YEAST (P38735) Probable ATP-dependent permease YHL035C 33 0.66
YMU0_YEAST (Q04670) Transposon Ty1 protein B 31 3.3
YME4_YEAST (Q04711) Transposon Ty1 protein B 31 3.3
YMD9_YEAST (Q03434) Transposon Ty1 protein B 31 3.3
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 31 4.3
YMT5_YEAST (Q04214) Transposon Ty1 protein B 30 5.6
YJZ9_YEAST (P47100) Transposon Ty1 protein B 30 7.3
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 30 7.3
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 90 LLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPP-FYSHHALNQVYTDS*SLFMVSIR 148
+L++A + + QLDV F+HG+L+E++YM P F + V + SL+ +
Sbjct: 907 ILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQA 966
Query: 149 SASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
+ + SF+ S Y ++ S ++ K ++ NF ++L++VD++++ G D
Sbjct: 967 PRQWYMKF-DSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKD 1018
>YHD5_YEAST (P38735) Probable ATP-dependent permease YHL035C
Length = 1592
Score = 33.5 bits (75), Expect = 0.66
Identities = 22/79 (27%), Positives = 42/79 (52%), Gaps = 3/79 (3%)
Query: 220 LVLFVFQCANVNMAQIY*LKLVSWVLNGCLHPCLCLRTRLPLKSLLLWTLADVLVSSGSF 279
L+LF ++++ ++Y W + H + + T +P++S+ + + D V S F
Sbjct: 173 LLLFWLILLSLSILRVYKRSTNLWAICFTAHTTIWISTWIPIRSVYIGNIDD--VPSQIF 230
Query: 280 YI*LQYVLTYSLQHISLAS 298
YI ++V+T +LQ I L S
Sbjct: 231 YI-FEFVITSTLQPIKLTS 248
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 31.2 bits (69), Expect = 3.3
Identities = 25/116 (21%), Positives = 55/116 (46%), Gaps = 9/116 (7%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALN-QVYTDS*SLFMV 145
L L++A ++ QLD++ +++ ++ E++Y+ PP H +N ++ SL+ +
Sbjct: 901 LMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGL 957
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
A++ S + G + + +F + + I +FVD++IL D
Sbjct: 958 KQSGANWYETIKSYLIKQCGMEEVRGWSCVF-----KNSQVTICLFVDDMILFSKD 1008
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 31.2 bits (69), Expect = 3.3
Identities = 25/116 (21%), Positives = 55/116 (46%), Gaps = 9/116 (7%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALN-QVYTDS*SLFMV 145
L L++A ++ QLD++ +++ ++ E++Y+ PP H +N ++ SL+ +
Sbjct: 901 LMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGL 957
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
A++ S + G + + +F + + I +FVD++IL D
Sbjct: 958 KQSGANWYETIKSYLIKQCGMEEVRGWSCVF-----KNSQVTICLFVDDMILFSKD 1008
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 31.2 bits (69), Expect = 3.3
Identities = 25/116 (21%), Positives = 55/116 (46%), Gaps = 9/116 (7%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALN-QVYTDS*SLFMV 145
L L++A ++ QLD++ +++ ++ E++Y+ PP H +N ++ SL+ +
Sbjct: 901 LMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGL 957
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILPGND 201
A++ S + G + + +F + + I +FVD++IL D
Sbjct: 958 KQSGANWYETIKSYLIKQCGMEEVRGWSCVF-----KNSQVTICLFVDDMILFSKD 1008
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 30.8 bits (68), Expect = 4.3
Identities = 11/24 (45%), Positives = 18/24 (74%)
Query: 101 LHQLDVNDTFIHGELDEKVYMVVP 124
+HQ+DV F++G L E++YM +P
Sbjct: 998 VHQMDVKTAFLNGTLKEEIYMRLP 1021
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 30.4 bits (67), Expect = 5.6
Identities = 23/112 (20%), Positives = 54/112 (47%), Gaps = 9/112 (8%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALN-QVYTDS*SLFMV 145
L L++A ++ QLD++ +++ ++ E++Y+ PP H +N ++ SL+ +
Sbjct: 901 LMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGL 957
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
A++ S + G + + +F + + I +FVD+++L
Sbjct: 958 KQSGANWYETIKSYLIKQCGMEEVRGWSCVF-----ENSQVTICLFVDDMVL 1004
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 30.0 bits (66), Expect = 7.3
Identities = 23/112 (20%), Positives = 54/112 (47%), Gaps = 9/112 (8%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALN-QVYTDS*SLFMV 145
L L++A ++ QLD++ +++ ++ E++Y+ PP H +N ++ SL+ +
Sbjct: 1328 LMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGL 1384
Query: 146 SIRSASYSLPCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLIL 197
A++ S + G + + +F + + I +FVD+++L
Sbjct: 1385 KQSGANWYETIKSYLIQQCGMEEVRGWSCVF-----KNSQVTICLFVDDMVL 1431
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 30.0 bits (66), Expect = 7.3
Identities = 30/123 (24%), Positives = 53/123 (42%), Gaps = 23/123 (18%)
Query: 87 LFLLLAIATTQY*HLHQLDVNDTFIHGELDEKVYMVVPPFYSHHALNQVYTDS*SLFMVS 146
L L+IA ++ QLD++ +++ ++ E++Y+ PP H LN ++
Sbjct: 1343 LMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPP---HLGLNDK--------LLR 1391
Query: 147 IRSASYSL--------PCPSSFLTSLGYAQSQSGHSLFTKIHNQKNFTVILIFVDNLILP 198
+R + Y L S+L + Q G S K + I +FVD++IL
Sbjct: 1392 LRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFK----NSQVTICLFVDDMILF 1447
Query: 199 GND 201
D
Sbjct: 1448 SKD 1450
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.351 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,097,543
Number of Sequences: 164201
Number of extensions: 1028094
Number of successful extensions: 3017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3014
Number of HSP's gapped (non-prelim): 9
length of query: 300
length of database: 59,974,054
effective HSP length: 110
effective length of query: 190
effective length of database: 41,911,944
effective search space: 7963269360
effective search space used: 7963269360
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC134049.15