BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133864.5 + phase: 0 /pseudo
(843 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13... 40 0.026
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 38 0.13
VE7_HPV57 (P22160) E7 protein 33 3.2
VP18_BRARE (P59015) Vacuolar protein sorting 18 32 7.0
RMAR_ASHGO (Q75G41) Mitochondrial ribosomal protein VAR1 32 7.0
C550_SYNP2 (Q55210) Cytochrome c-550 precursor (Cytochrome c550)... 32 7.0
>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
(Leucine-rich PPR-motif containing protein)
Length = 1273
Score = 40.0 bits (92), Expect = 0.026
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 252 AQRVFD---RMGVRDDVS-WATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALL 307
A R++D ++G DVS + ++ Y++N F L KM N++ N+V +
Sbjct: 25 AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84
Query: 308 VVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLV- 366
+ D+E +I + L V + +V +A+ G+++ A + + +
Sbjct: 85 SYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEP 144
Query: 367 ---AWSAFLSALVETGYPREV-LSIFQVMQYEGLKPDKAILSILVS 408
+ A L+A E G V ++ +V ++E D+ +L I+ S
Sbjct: 145 GPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFS 190
Score = 38.1 bits (87), Expect = 0.098
Identities = 40/206 (19%), Positives = 84/206 (40%), Gaps = 13/206 (6%)
Query: 565 VKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMA 624
V D +N ++ YL N Y +M+ N++PN VT+ ++ + + + A
Sbjct: 38 VYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASK 97
Query: 625 FHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMEN----KDTISWNAMLSAYA 680
+ + ++L+ +A+ G + +E M + ++ A+L+AYA
Sbjct: 98 ILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYA 157
Query: 681 MHGQGELAVALFSVMQESNVRV---DSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVE 737
G + +++ + + D + I S + + Q+ W F CE+ ++
Sbjct: 158 EKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGYLSMSQKFWKKFT--CERRYIP 215
Query: 738 PSMEHYACMVDLLGCAGLFDEVLSLL 763
+M ++ LL L D L +L
Sbjct: 216 DAMN----LILLLVTEKLEDVALQIL 237
Score = 32.0 bits (71), Expect = 7.0
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 234 VVSNSLIDMYCKCGDVHSAQRVFDRMGVRD----DVSWATMMAGYVKNGCYFEGLQLLHK 289
V LI YC GD+ A ++ M +D + ++ ++ G+ + G +L
Sbjct: 77 VTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTV 136
Query: 290 MRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGE 349
MR ++ + L AE D++ K+ + L I+ ++K G
Sbjct: 137 MRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGY 196
Query: 350 LKKARELF 357
L +++ +
Sbjct: 197 LSMSQKFW 204
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
Length = 1261
Score = 37.7 bits (86), Expect = 0.13
Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 22/245 (8%)
Query: 83 AINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGL-ECDVYIGTSLI 141
A+N++ + +KP F +N VL A E +++++ +GL V GT +I
Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGT-VI 968
Query: 142 DMFCKMGCLDNARNVFDKMPVKDG-----VCWNAMISGLSQSL-NPCEALEMFWRMQMEG 195
+ C++G A +F +M + +N MI Q++ N +AL + R+
Sbjct: 969 NAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATD 1028
Query: 196 FEVDKVSILNLAPAVSRLG--DVGCCKSIHGYVVRRSI----------CGVVSNSLIDMY 243
E + L A L +VG K++ + R + ++ N + D+
Sbjct: 1029 IEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTDVPILSMHYAAYIHILGNVVSDVQ 1088
Query: 244 CKCGDVHSAQRVFDRMGVRDDVS-WATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAV 302
+A D ++ D + + + + + N EG+Q++ M+R NV +N +
Sbjct: 1089 AATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVSLN-AYI 1147
Query: 303 VNALL 307
VNAL+
Sbjct: 1148 VNALI 1152
Score = 32.7 bits (73), Expect = 4.1
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 9/173 (5%)
Query: 587 AISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLID 646
A++ F K NV+P++ + +L + E + G L ++ ++I+
Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969
Query: 647 MYAKCGQLRYSEKCFHEMENKDTIS-----WNAML--SAYAMHGQGELAVALFSVMQESN 699
+ G +EK F EMEN+ +N M+ M + E A+ ++ + ++
Sbjct: 970 AACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNR-EKALFYYNRLCATD 1028
Query: 700 VRVDSVSYISVLSACRHSGLIQEG-WDIFASMCEKHHVEPSMEHYACMVDLLG 751
+ S +Y ++ A + G + E+ V HYA + +LG
Sbjct: 1029 IEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTDVPILSMHYAAYIHILG 1081
>VE7_HPV57 (P22160) E7 protein
Length = 92
Score = 33.1 bits (74), Expect = 3.2
Identities = 23/78 (29%), Positives = 32/78 (40%), Gaps = 10/78 (12%)
Query: 734 HHVEPSMEHYACMVDL------LGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSN 787
H PS+E +++ L C FD N TEP + +G + CK HS
Sbjct: 2 HGERPSLEDITLILEEIPEIVDLHCDEQFDNSEEDTNYQLTEPAVQAYGVVTTCCKCHST 61
Query: 788 VTL----GEVAVHHLLKL 801
V L G + HL +L
Sbjct: 62 VRLVVECGAADIRHLEQL 79
>VP18_BRARE (P59015) Vacuolar protein sorting 18
Length = 974
Score = 32.0 bits (71), Expect = 7.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 654 LRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSY--ISVL 711
+RY E C +E++ K+ N +LS YA H AL ++++ V + Y L
Sbjct: 646 IRYMEFCVYELDVKEEAIHNYLLSLYAKHKPD----ALLWYLEQAGTHVSDIHYDLKYAL 701
Query: 712 SACRHSGLIQ 721
C G +Q
Sbjct: 702 RLCSEHGYLQ 711
>RMAR_ASHGO (Q75G41) Mitochondrial ribosomal protein VAR1
Length = 339
Score = 32.0 bits (71), Expect = 7.0
Identities = 30/110 (27%), Positives = 54/110 (48%), Gaps = 18/110 (16%)
Query: 4 KSMKIKLF----TSKHSNSLHTHHIFPIQQQNNNNH--YLKLINSCKYINPLLQIHTHFL 57
K +K+KL T K N+++ H+I+ + N NN+ YL +N+ Y N + +
Sbjct: 14 KKLKLKLILMMITMKRLNNMNQHNIYKNRYYNKNNNLQYLNKLNT--YNNKMYYFNK--- 68
Query: 58 QIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLK 107
Q+ N LI+ N+ F++ K + + + IL LK + T + +K
Sbjct: 69 QLMNNMLIIDNT-------FNNLLKKMMMSNNILMTNLKFEHRTNSIHIK 111
>C550_SYNP2 (Q55210) Cytochrome c-550 precursor (Cytochrome c550)
(Low potential cytochrome c)
Length = 170
Score = 32.0 bits (71), Expect = 7.0
Identities = 19/85 (22%), Positives = 35/85 (40%)
Query: 694 VMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCA 753
V+ + V +I+ S C +SG + ++ S+ + EP ++ MVD L
Sbjct: 53 VLSDQQVAKGERIFINTCSTCHNSGRTKSNPNVTLSLVDLEGAEPRRDNILAMVDYLKNP 112
Query: 754 GLFDEVLSLLNKMTTEPDARVWGAL 778
+D L L A +W ++
Sbjct: 113 TSYDVELDLSQLHPNTVRADIWSSM 137
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,221,677
Number of Sequences: 164201
Number of extensions: 3990339
Number of successful extensions: 10468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10448
Number of HSP's gapped (non-prelim): 23
length of query: 843
length of database: 59,974,054
effective HSP length: 119
effective length of query: 724
effective length of database: 40,434,135
effective search space: 29274313740
effective search space used: 29274313740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Medicago: description of AC133864.5