BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133862.6 - phase: 0
(368 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GLS2_YEAST (P40989) 1,3-beta-glucan synthase component GLS2 (EC ... 33 0.88
CBL9_ARATH (Q9FJ13) COBRA-like protein 9 precursor 33 1.5
VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spi... 32 2.0
YLA4_CAEEL (Q05036) Hypothetical protein C30C11.4 in chromosome III 31 4.4
Y084_RICPR (Q9ZE63) Hypothetical protein RP084 31 4.4
OXA2_LACLA (Q9CHZ9) Membrane protein oxaA 2 precursor 31 5.7
CAD1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uv... 31 5.7
PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor 30 7.4
IF41_YEAST (P39935) Eukaryotic initiation factor 4F subunit p150... 30 7.4
DPOL_HHV1K (P04292) DNA polymerase (EC 2.7.7.7) 30 7.4
MYBA_CHICK (P52550) Myb-related protein A (A-Myb) 30 9.7
ACH2_CAEEL (P48181) Acetylcholine receptor, beta-type subunit un... 30 9.7
>GLS2_YEAST (P40989) 1,3-beta-glucan synthase component GLS2 (EC
2.4.1.34) (1,3-beta-D-glucan-UDP glucosyltransferase)
Length = 1895
Score = 33.5 bits (75), Expect = 0.88
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 282 YPEEHYFPTLLSMEDSDGVTGYTLTNVNWTGTVNGHPHTYQPEEVSPEL 330
YP + Y P+ +S D DG +G + N G VNG+ Y P + L
Sbjct: 116 YPNDQYTPSQMSYPDQDGSSGASTPYGN--GVVNGNGQYYDPNAIEMAL 162
>CBL9_ARATH (Q9FJ13) COBRA-like protein 9 precursor
Length = 663
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 17 PILFFLAPAILPPHPSPIPISPTDELDDINL-FNTAISHSTPPS-SSSHPSKF 67
P + L P I+ P P+P PISP+D + I L ++ + PP+ ++ P +F
Sbjct: 20 PSMSQLPPTIMVPAPAPAPISPSDLCNGIFLSYDFILGRKIPPNDTADQPYRF 72
>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike
glycoprotein)
Length = 681
Score = 32.3 bits (72), Expect = 2.0
Identities = 33/112 (29%), Positives = 46/112 (40%), Gaps = 18/112 (16%)
Query: 27 LPPHPSPIPISPTDE----------LDDINLFNTAISHSTPPSSSSHPSKFFHLSSKNPT 76
+PP PSP P +P E + + N NT S PP +++ S + T
Sbjct: 294 MPPTPSPQPSTPQQEGNNTDHSQGTVTEPNKTNTTAQPSMPPHNTTAISTNNTSKNNFST 353
Query: 77 FKIAFLFLTNTDLHFTPLWNLFFQTT-PSKLFNVYVHSDPRVNLTLLRSSNN 127
++ TN D T N QT+ PSK P NLT +S+NN
Sbjct: 354 LSVSLQNTTNYDTQSTATEN--EQTSAPSK-----TTLPPTGNLTTAKSTNN 398
>YLA4_CAEEL (Q05036) Hypothetical protein C30C11.4 in chromosome III
Length = 776
Score = 31.2 bits (69), Expect = 4.4
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 316 GHPHTYQPEEVSPELILRLRKSTNSESFLFARKFVPDCL 354
G PHT+ PE+V L+ +LR T ES L K V DC+
Sbjct: 107 GEPHTFTPEQVLAALLTKLR--TIVESQLSDVKKVSDCV 143
>Y084_RICPR (Q9ZE63) Hypothetical protein RP084
Length = 165
Score = 31.2 bits (69), Expect = 4.4
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 7 LLTFSLLLSLPILFFL----APAILPPHPSPIPISPTDELDDINLFNTAISH----STPP 58
LLT+S ++S+ +L + AP+ PP P P P P + L+ N+ +H S
Sbjct: 11 LLTYSFIISINLLTTMSEASAPSGNPPPPPPPPPPPIEGLNKFKSLNSPPNHQLDNSAKV 70
Query: 59 SSSSHPSKFFHLSS 72
+ H +K + S+
Sbjct: 71 EQAQHTNKNYTTSN 84
>OXA2_LACLA (Q9CHZ9) Membrane protein oxaA 2 precursor
Length = 320
Score = 30.8 bits (68), Expect = 5.7
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 80 AFLFLTNTDLHFTPLWNLFFQTTPSKLFNVYVHSDPRVNLTLLRSSNNY-NPIFKFISSK 138
AF+ L +LH W + F T + + + + T ++ Y P+F + +
Sbjct: 55 AFVDLFANNLHMGYGWGIIFVTLIIRFLILPLGLNQAYKSTYMQEKMAYLAPVFAPLQER 114
Query: 139 KTYRASPTLISATRRLLASAILDDASNAYFIVLSQYCIPLHSFDYIYKSLFLSPTFDLTD 198
+P A ++ L +A D+ N ++ S C+P+ + +L+ + +
Sbjct: 115 LKKAQTPEEKMAAQQALMAAQKDNGIN---MLSSIGCLPMLIQWPFFIALYNAAAYTTGI 171
Query: 199 SESTQFGVRLKYKSFIEIINNG 220
S ST +G+ L + S + +I +G
Sbjct: 172 SSSTFYGIPLGHPSVVLVIISG 193
>CAD1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin)
(Uvomorulin) (Cadherin-1)
Length = 886
Score = 30.8 bits (68), Expect = 5.7
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 29 PHPSPIPISPTDELDDINLFNTAISHSTPPSSSSHPSKFFHLSSKNPTFKIAFLFLTNTD 88
P S + +S TD DDIN +N AI+++ P K ++ + N + + + D
Sbjct: 281 PGTSVMQVSATDADDDINTYNAAIAYTILSQDPELPHK--NMFTVNRDTGVISVVTSGLD 338
Query: 89 LHFTPLWNLFFQTTPSKLFNVYVHSDPRVNLTLLRSSNNYNPIFKFISSKKTYRASPTLI 148
P + L Q + L + + + +T ++ N+ PIF + TY+
Sbjct: 339 RESYPTYTLVVQA--ADLQGEGLSTTAKAVIT-VKDINDNAPIF----NPSTYQGQVLEN 391
Query: 149 SATRRLLASAILDD------ASNAYFIVLSQYCIPLHSFDYI 184
R+ + DD A NA + V++ P H F I
Sbjct: 392 EVGARIATLKVTDDDAPNTPAWNAVYTVVND---PDHQFTVI 430
>PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor
Length = 528
Score = 30.4 bits (67), Expect = 7.4
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 7/142 (4%)
Query: 11 SLLLSLPILFFLAPAILPPHPSPIPI-SPTDELDDINLFNTAISHSTPPSSSSHPSKFFH 69
+L LS +L P +LP PSP P SP+ ++ + TP SS + +
Sbjct: 4 ALALSALLLLLSTPPLLPSSPSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDTA 63
Query: 70 LSSKNPTFKIAFLFLTNTDLHFTPLWNLFFQTTPSKLFNVYVHSDPRVNLTLLRSSNNYN 129
S PT K N L L + + VN T+ R + N
Sbjct: 64 QQSTVPTSK------ANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGN 117
Query: 130 PIFKFISSKKTYRASPTLISAT 151
P S K T A T ++ +
Sbjct: 118 PTTTIESPKSTKSADTTTVATS 139
>IF41_YEAST (P39935) Eukaryotic initiation factor 4F subunit p150
(eIF4F p150) (eIF-4F p150) (mRNA cap-binding protein
complex subunit p150)
Length = 952
Score = 30.4 bits (67), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 299 GVTGYTLTNVNWTGTVNGHPHTYQPEEVS 327
G G +NV WTG N +P YQP++++
Sbjct: 84 GHMGANSSNVPWTGYYNNYPVYYQPQQMA 112
>DPOL_HHV1K (P04292) DNA polymerase (EC 2.7.7.7)
Length = 1235
Score = 30.4 bits (67), Expect = 7.4
Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 8/87 (9%)
Query: 9 TFSLLLSLPILFFLAPAILPPHPSPIPISPTDELDDINLFNTAISHSTPPSSSSHPSKFF 68
T + L +L L AP P P+ +P SP + SH+ PP +S P K
Sbjct: 1086 TVARLAALRELDAAAPGDEPAPPAALP-SPAKRPRETP------SHADPPGGASKPRKLL 1138
Query: 69 HLS-SKNPTFKIAFLFLTNTDLHFTPL 94
+++P + IA NTD +F+ L
Sbjct: 1139 VSELAEDPAYAIAHGVALNTDYYFSHL 1165
>MYBA_CHICK (P52550) Myb-related protein A (A-Myb)
Length = 757
Score = 30.0 bits (66), Expect = 9.7
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 37 SPTDELDD---INLFNTAISHSTPPSSSSHPSKFFHLSSKNPTFKIAFLFLTNTD----- 88
SP +EL+D + N A+ H+ + PS+FF+ S N F + T+T
Sbjct: 463 SPVNELNDGLCNDAINVALKHTPVKTLPFSPSQFFNTCSGNEQFNLENPAFTSTPICGQK 522
Query: 89 -LHFTPLWNLFFQTTPSKLFNVYVHSDPRVNLTLLRSSNNYNPIFK 133
L TPL +TTP+ P + +LL S+ FK
Sbjct: 523 VLITTPLHK---ETTPTDQKENAGFRTPTIRRSLLGSTPRTPTPFK 565
>ACH2_CAEEL (P48181) Acetylcholine receptor, beta-type subunit
unc-29 precursor (Uncoordinated protein 29)
Length = 493
Score = 30.0 bits (66), Expect = 9.7
Identities = 14/29 (48%), Positives = 18/29 (61%)
Query: 8 LTFSLLLSLPILFFLAPAILPPHPSPIPI 36
LT S+LLS+ + L ILPP S IP+
Sbjct: 264 LTISVLLSIVVFLLLVSKILPPTSSTIPL 292
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,951,678
Number of Sequences: 164201
Number of extensions: 1963574
Number of successful extensions: 5060
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 14
length of query: 368
length of database: 59,974,054
effective HSP length: 112
effective length of query: 256
effective length of database: 41,583,542
effective search space: 10645386752
effective search space used: 10645386752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC133862.6