BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133780.7 + phase: 0
(192 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SSRB_CANFA (P23438) Translocon-associated protein, beta subunit ... 64 3e-10
SSRB_HUMAN (P43308) Translocon-associated protein, beta subunit ... 57 2e-08
COX1_ACACA (Q37370) Cytochrome c oxidase polypeptide I+II (EC 1.... 33 0.53
COX1_OENBE (P08743) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 31 2.0
COX1_ALBTU (Q09333) Cytochrome c oxidase polypeptide I (EC 1.9.3... 30 3.4
COX1_ALBCO (P48887) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 30 3.4
COX1_ALLMA (P80440) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 30 4.5
5HT2_APLCA (Q16951) 5-hydroxytryptamine 2 receptor (5-HTB2) (Ser... 30 4.5
Y507_HAEIN (P44010) Hypothetical UPF0114 protein HI0507 29 5.9
COX1_RAPSA (P60621) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 29 5.9
COX1_ARATH (P60620) Probable cytochrome c oxidase polypeptide I ... 29 5.9
ISPH_XYLFT (P65194) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 29 7.7
ISPH_XYLFA (P65193) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 29 7.7
>SSRB_CANFA (P23438) Translocon-associated protein, beta subunit
precursor (TRAP-beta) (Signal sequence receptor beta
subunit) (SSR-beta) (GP25H)
Length = 183
Score = 63.5 bits (153), Expect = 3e-10
Identities = 49/184 (26%), Positives = 89/184 (47%), Gaps = 6/184 (3%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L+A +L+A F + SHA + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 3 LLASVLLALFAV-SHAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAA 128
SDDS+ + F ++SG + W+++ +SHT L G F A + +
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGP 119
Query: 129 LQEAYSTPILPLDVLADRAPEKKFEWRLL--AKYGSLISVISIIVMFVYLVATPSKSGAK 186
+ +++ +LA R +++F L A +G ++++ SI + + ++ K
Sbjct: 120 VVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDTP 178
Query: 187 GSKK 190
SKK
Sbjct: 179 KSKK 182
>SSRB_HUMAN (P43308) Translocon-associated protein, beta subunit
precursor (TRAP-beta) (Signal sequence receptor beta
subunit) (SSR-beta)
Length = 183
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 9 LIAFLLIASFLLCSHASSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSL 68
L++F+++A F + + A + + K+ LNR +++ +IYN G+S A DV L
Sbjct: 3 LLSFVVLALFAV-TQAEEGARLLAS--KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 69 SDDSWTSDLFSVISGTTSKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKF 121
SDDS+ + F ++SG + W+++ +SHT L G F A I +
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112
>COX1_ACACA (Q37370) Cytochrome c oxidase polypeptide I+II (EC
1.9.3.1)
Length = 873
Score = 32.7 bits (73), Expect = 0.53
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLV 177
P+ + W +L+ +GS+IS +S+IV F YL+
Sbjct: 457 PDNYYYWNILSSFGSIISSVSVIVFF-YLI 485
>COX1_OENBE (P08743) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 527
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSKSGAK 186
PE W L+ +GS ISV+ I FV + T S K
Sbjct: 446 PESYAGWNALSSFGSYISVVGIRCFFVVVTITSSSGNNK 484
>COX1_ALBTU (Q09333) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
(Fragment)
Length = 195
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLV 177
P+ F W L+ YGSL+SV +++ +FV +V
Sbjct: 118 PDSYFMWNQLSSYGSLMSVFAVL-LFVLIV 146
>COX1_ALBCO (P48887) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 509
Score = 30.0 bits (66), Expect = 3.4
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLV 177
P+ F W L+ YGSL+SV +++ +FV +V
Sbjct: 439 PDSYFMWNQLSSYGSLMSVFAVL-LFVLIV 467
>COX1_ALLMA (P80440) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 536
Score = 29.6 bits (65), Expect = 4.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSK 182
P+ +W +++ +GS+IS++S IV L T S+
Sbjct: 449 PDAFTQWNVISSFGSIISIVSTIVFLYGLYLTLSQ 483
>5HT2_APLCA (Q16951) 5-hydroxytryptamine 2 receptor (5-HTB2)
(Serotonin receptor 2)
Length = 421
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 11 AFLLIASFLLCSHASSDVPFIVAHKKASLNRLKT 44
A L+IAS +CS S VPF + + S+ +KT
Sbjct: 139 ALLIIASLWICSFVVSFVPFFLEWHELSMEEIKT 172
>Y507_HAEIN (P44010) Hypothetical UPF0114 protein HI0507
Length = 183
Score = 29.3 bits (64), Expect = 5.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 122 RVPTSAALQEAYSTPILPLDVLADRAPEKKFEWRLLAKYGSLISVISIIVMFVYLVATPS 181
+V S ++ S +L V A PEK W+LL G L+S I++ L +T
Sbjct: 121 KVKLSMSIIGISSIHMLQTFVNASNMPEKTMMWQLLLHLGFLVSAIALAYTDKILYSTSH 180
Query: 182 KS 183
K+
Sbjct: 181 KT 182
>COX1_RAPSA (P60621) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 527
Score = 29.3 bits (64), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSKSGAK 186
P+ W L+ +GS ISV+ I FV + T S K
Sbjct: 446 PDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNK 484
>COX1_ARATH (P60620) Probable cytochrome c oxidase polypeptide I (EC
1.9.3.1)
Length = 527
Score = 29.3 bits (64), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 148 PEKKFEWRLLAKYGSLISVISIIVMFVYLVATPSKSGAK 186
P+ W L+ +GS ISV+ I FV + T S K
Sbjct: 446 PDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNK 484
>ISPH_XYLFT (P65194) 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase (EC 1.17.1.2)
Length = 316
Score = 28.9 bits (63), Expect = 7.7
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 27 DVPFIVAHKKAS-LNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTT 85
D+ +V +S NRL A+R V + + D +W D I T
Sbjct: 217 DLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEI-------DPAWVIDKHH-IGVTA 268
Query: 86 SKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQ 130
+ ++ GVL+ +EL A S +G+P + F +P + LQ
Sbjct: 269 GASAPQVLVDGVLARLYELGATSVSEHSGKPESMVFALPKALRLQ 313
>ISPH_XYLFA (P65193) 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase (EC 1.17.1.2)
Length = 316
Score = 28.9 bits (63), Expect = 7.7
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 27 DVPFIVAHKKAS-LNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWTSDLFSVISGTT 85
D+ +V +S NRL A+R V + + D +W D I T
Sbjct: 217 DLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEI-------DPAWVIDKHH-IGVTA 268
Query: 86 SKTWEKLDAGGVLSHTFELEAKSKGVFAGEPAIIKFRVPTSAALQ 130
+ ++ GVL+ +EL A S +G+P + F +P + LQ
Sbjct: 269 GASAPQVLVDGVLARLYELGATSVSEHSGKPESMVFALPKALRLQ 313
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,300,357
Number of Sequences: 164201
Number of extensions: 811330
Number of successful extensions: 1894
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 13
length of query: 192
length of database: 59,974,054
effective HSP length: 104
effective length of query: 88
effective length of database: 42,897,150
effective search space: 3774949200
effective search space used: 3774949200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC133780.7