BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC133139.8 - phase: 0
(392 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger prote... 43 0.002
KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precu... 40 0.008
ZIC3_MOUSE (Q62521) Zinc finger protein ZIC 3 (Zinc finger prote... 40 0.010
Y355_SYNY3 (P74436) Hypothetical transport protein sll0355 40 0.013
TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin a... 39 0.030
TYY1_HUMAN (P25490) Transcriptional repressor protein YY1 (Yin a... 39 0.030
GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (... 39 0.030
PO12_BRARE (P56224) POU domain protein 12 (POU domain protein zp... 38 0.039
HUNB_DROAA (O46234) Hunchback protein (Fragments) 38 0.039
BUN2_DROME (Q24523) Bunched protein, class 2 isoform (Shortsight... 38 0.039
NR43_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone... 38 0.051
NR43_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclea... 38 0.051
YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-) 37 0.066
OTX1_RAT (Q63410) Homeobox protein OTX1 37 0.066
OTX1_MOUSE (P80205) Homeobox protein OTX1 37 0.066
MOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific... 37 0.066
MOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2) 37 0.066
MOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox ... 37 0.066
CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homo... 37 0.066
SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinas... 37 0.087
>ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger protein
of the cerebellum 3)
Length = 467
Score = 42.7 bits (99), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (63%)
Query: 169 IGHHHHHHHHSHHSAEISAVAAHKTHMFRGT 199
+GHHHHHHHH HH++++ + + F T
Sbjct: 85 LGHHHHHHHHHHHTSQVPSYGGAASAAFNST 115
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein
precursor (KAHRP)
Length = 657
Score = 40.4 bits (93), Expect = 0.008
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 171 HHHHHHHHSHHSAEISAVAAHKTH 194
HHHHHHHH HH + A H+ H
Sbjct: 63 HHHHHHHHHHHQHQAPHQAPHQAH 86
Score = 36.2 bits (82), Expect = 0.15
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 171 HHHHHHHHSHHSAEISAVAAHKTH 194
HHHHHHHH H + + AH H
Sbjct: 66 HHHHHHHHQHQAPHQAPHQAHHHH 89
Score = 32.3 bits (72), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 9/36 (25%)
Query: 171 HHHHHHHHSH-HSAEISAVAAH--------KTHMFR 197
HHHHHHHH H H + A+ KT +FR
Sbjct: 112 HHHHHHHHHHLHPQQPQGTVANPPSNEPVVKTQVFR 147
Score = 30.4 bits (67), Expect = 8.1
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 159 TSLYKGKEFYIGHHHHHH-------------HHSHHSAEIS 186
T K E + HHHHHH HH HH E++
Sbjct: 55 TLAQKQHEHHHHHHHHHHHQHQAPHQAPHQAHHHHHHGEVN 95
>ZIC3_MOUSE (Q62521) Zinc finger protein ZIC 3 (Zinc finger protein
of the cerebellum 3)
Length = 466
Score = 40.0 bits (92), Expect = 0.010
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 169 IGHHHHHHHHSHHSAEISAVAAHKTHMFRGT 199
+GHHHHHHHH HH++++ A + F T
Sbjct: 85 LGHHHHHHHH-HHASQVPTYARRASAAFNST 114
>Y355_SYNY3 (P74436) Hypothetical transport protein sll0355
Length = 330
Score = 39.7 bits (91), Expect = 0.013
Identities = 35/131 (26%), Positives = 54/131 (40%), Gaps = 2/131 (1%)
Query: 24 LLVQIFATGMQLLSRVILVQGTYIFALIAYRHIVAAICVAPFALYFERGQAKKFNWRVWF 83
L+ F G +++ ++ T F + R I A I V +A+ +R Q + NW+ W
Sbjct: 17 LIAPFFLWGTAMVAMKGVLADTTPFFVATVRLIPAGILVLLWAMGQKRPQPQ--NWQGWG 74
Query: 84 WLFLNGFVGMTMALGLFYYGLRDTTATYSVNFLNLVPILTFLTSIICRMENLKIGTWGGR 143
W+ L V T+ G GL T A ++ PI L S E + W G
Sbjct: 75 WIILFALVDGTLFQGFLAQGLERTGAGLGSVIIDSQPIAVALLSSWLFKEVIGGIGWLGL 134
Query: 144 AKCIGAIMCVG 154
+G I +G
Sbjct: 135 LLGVGGISLIG 145
>TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin and
yang 1) (YY-1) (Delta transcription factor) (NF-E1)
(UCR-motif DNA-binding protein)
Length = 414
Score = 38.5 bits (88), Expect = 0.030
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 164 GKEFYIGHHHHHHHHSHHSAEISAV 188
G + GHHHHHHHH HH + A+
Sbjct: 64 GGHGHAGHHHHHHHHHHHHPPMIAL 88
>TYY1_HUMAN (P25490) Transcriptional repressor protein YY1 (Yin and
yang 1) (YY-1) (Delta transcription factor) (NF-E1)
Length = 414
Score = 38.5 bits (88), Expect = 0.030
Identities = 13/23 (56%), Positives = 15/23 (64%)
Query: 164 GKEFYIGHHHHHHHHSHHSAEIS 186
G + GHHHHHHHH HH I+
Sbjct: 63 GGHGHAGHHHHHHHHHHHPPMIA 85
Score = 32.7 bits (73), Expect = 1.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 170 GH--HHHHHHHSHHSAEISAV 188
GH HHHHHHH HH + A+
Sbjct: 66 GHAGHHHHHHHHHHHPPMIAL 86
>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2
(Glide2 protein)
Length = 613
Score = 38.5 bits (88), Expect = 0.030
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 171 HHHHHHHHSHHSAEISAVAAHKTH 194
+HHHHHHH HH A + +A TH
Sbjct: 590 YHHHHHHHLHHPAAATGLAPSVTH 613
>PO12_BRARE (P56224) POU domain protein 12 (POU domain protein
zp-12) (Class III POU domain protein taichi)
(Brain-specific homeobox/POU domain protein 1.1)
(Brn-1.1)
Length = 437
Score = 38.1 bits (87), Expect = 0.039
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 154 GGALATSLYKGKEFYIGHHHHHHHHS------HHSAEISAVAAHKTH 194
G + L +G+ + HHHHHHHH HH + V +H +H
Sbjct: 192 GSLVHPGLMRGESPEMDHHHHHHHHQQQHPHHHHHQHHAGVNSHDSH 238
>HUNB_DROAA (O46234) Hunchback protein (Fragments)
Length = 196
Score = 38.1 bits (87), Expect = 0.039
Identities = 15/32 (46%), Positives = 22/32 (67%), Gaps = 2/32 (6%)
Query: 165 KEFYIGHHHHHH--HHSHHSAEISAVAAHKTH 194
K+ I HHHHHH HHSHH+ + ++ A++ H
Sbjct: 11 KQEPISHHHHHHHAHHSHHAHDSNSNASNSPH 42
>BUN2_DROME (Q24523) Bunched protein, class 2 isoform (Shortsighted
protein)
Length = 1206
Score = 38.1 bits (87), Expect = 0.039
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 144 AKCIGAIMCVGGALATSLYKGKEFYIGHHHHHHHHSHH 181
A+ +G A T+ G + HHHHHHHH HH
Sbjct: 280 ARSVGGA-ATSAATGTTAAAGSHHHQPHHHHHHHHHHH 316
Score = 36.6 bits (83), Expect = 0.11
Identities = 19/39 (48%), Positives = 20/39 (50%), Gaps = 10/39 (25%)
Query: 153 VGGALATSLYKGKEFYIG---------HHHHHHHHSHHS 182
VGGA ATS G G HHHHHHHH HH+
Sbjct: 283 VGGA-ATSAATGTTAAAGSHHHQPHHHHHHHHHHHQHHN 320
Score = 30.8 bits (68), Expect = 6.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 171 HHHHHHHHSHHSAEISAVAAHKTH 194
HHHHH HH+H + + + H
Sbjct: 312 HHHHHQHHNHQQQQQQQTSLSQGH 335
>NR43_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone
receptor NOR-1/NOR-2) (Neuron-derived orphan receptor
1/2)
Length = 628
Score = 37.7 bits (86), Expect = 0.051
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 163 KGKEFYIGHHHHHHHHSHH 181
+G+E HHHHHHHH HH
Sbjct: 92 EGREHGYHHHHHHHHHHHH 110
Score = 32.7 bits (73), Expect = 1.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 171 HHHHHHHHSHHSAEIS 186
HHHHHHHH H + S
Sbjct: 103 HHHHHHHHHHQQQQPS 118
Score = 30.4 bits (67), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 171 HHHHHHHHSHHSAEI 185
HHHHHHHH I
Sbjct: 105 HHHHHHHHQQQQPSI 119
>NR43_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear
receptor TEC) (Translocated in extraskeletal
chondrosarcoma)
Length = 627
Score = 37.7 bits (86), Expect = 0.051
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 163 KGKEFYIGHHHHHHHHSHH 181
+G+E HHHHHHHH HH
Sbjct: 92 EGREHGYHHHHHHHHHHHH 110
Score = 30.4 bits (67), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 171 HHHHHHHHSHHSAEI 185
HHHHHHHH I
Sbjct: 104 HHHHHHHHQQQQPSI 118
>YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-)
Length = 420
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 298 GHHHHHHHHHHH 309
Score = 36.6 bits (83), Expect = 0.11
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 171 HHHHHHHHSHHS 182
HHHHHHHH HHS
Sbjct: 300 HHHHHHHHHHHS 311
Score = 35.4 bits (80), Expect = 0.25
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 171 HHHHHHHHSHHSAEISAVAAHKTHM 195
HHHHHHHHSH S + H+
Sbjct: 303 HHHHHHHHSHDDDPSSPAEKKQNHV 327
Score = 34.3 bits (77), Expect = 0.56
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 171 HHHHHHHHSHHSAEISAVAAHK 192
HHHHHHHH H + S+ A K
Sbjct: 302 HHHHHHHHHSHDDDPSSPAEKK 323
Score = 32.7 bits (73), Expect = 1.6
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 165 KEFYIGHHHHHHHHSHH 181
K+ + HHHHHHH HH
Sbjct: 292 KDLHHEGHHHHHHHHHH 308
>OTX1_RAT (Q63410) Homeobox protein OTX1
Length = 355
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 291 GHHHHHHHHHHH 302
Score = 32.3 bits (72), Expect = 2.1
Identities = 11/19 (57%), Positives = 12/19 (62%)
Query: 171 HHHHHHHHSHHSAEISAVA 189
HHHHHHHH H S +A
Sbjct: 293 HHHHHHHHHHQGYGGSGLA 311
Score = 31.2 bits (69), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 172 HHHHHHHSHHSAEISAVAAHKTH 194
HHHHH H+HH S+ H H
Sbjct: 275 HHHHHPHAHHPLSQSSGHHHHHH 297
>OTX1_MOUSE (P80205) Homeobox protein OTX1
Length = 355
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 291 GHHHHHHHHHHH 302
Score = 32.3 bits (72), Expect = 2.1
Identities = 11/19 (57%), Positives = 12/19 (62%)
Query: 171 HHHHHHHHSHHSAEISAVA 189
HHHHHHHH H S +A
Sbjct: 293 HHHHHHHHHHQGYGGSGLA 311
Score = 31.2 bits (69), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 172 HHHHHHHSHHSAEISAVAAHKTH 194
HHHHH H+HH S+ H H
Sbjct: 275 HHHHHPHAHHPLSQSSGHHHHHH 297
>MOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific
homeobox)
Length = 303
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 67 GHHHHHHHHHHH 78
Score = 35.4 bits (80), Expect = 0.25
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 171 HHHHHHHHSHHSAE 184
HHHHHHHH HH +
Sbjct: 69 HHHHHHHHHHHQQQ 82
Score = 33.9 bits (76), Expect = 0.73
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 155 GALATSLYKGKEFYIGHHHHHHHHSHHSAEISAVAAH 191
G A+ ++G HHHHHHHH H + A+ ++
Sbjct: 58 GMFASQHHRGHH----HHHHHHHHHHQQQQHQALQSN 90
>MOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)
Length = 303
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 67 GHHHHHHHHHHH 78
Score = 35.4 bits (80), Expect = 0.25
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 171 HHHHHHHHSHHSAE 184
HHHHHHHH HH +
Sbjct: 69 HHHHHHHHHHHQQQ 82
Score = 33.9 bits (76), Expect = 0.73
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 155 GALATSLYKGKEFYIGHHHHHHHHSHHSAEISAVAAH 191
G A+ ++G HHHHHHHH H + A+ ++
Sbjct: 58 GMFASQHHRGHH----HHHHHHHHHHQQQQHQALQSN 90
>MOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2)
(Growth arrest-specific homeobox)
Length = 303
Score = 37.4 bits (85), Expect = 0.066
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 170 GHHHHHHHHSHH 181
GHHHHHHHH HH
Sbjct: 67 GHHHHHHHHHHH 78
Score = 35.4 bits (80), Expect = 0.25
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 171 HHHHHHHHSHHSAE 184
HHHHHHHH HH +
Sbjct: 69 HHHHHHHHHHHQQQ 82
Score = 33.5 bits (75), Expect = 0.96
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 155 GALATSLYKGKEFYIGHHHHHHHHSHHSAEISAV 188
G A+ ++G HHHHHHHH H + A+
Sbjct: 58 GMFASQHHRGHH----HHHHHHHHHHQQQQHQAL 87
>CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2
homolog) (Pc2) (MPc2)
Length = 551
Score = 37.4 bits (85), Expect = 0.066
Identities = 12/22 (54%), Positives = 15/22 (67%)
Query: 171 HHHHHHHHSHHSAEISAVAAHK 192
HHHHHHHH HH+ ++ A K
Sbjct: 385 HHHHHHHHHHHTVGLNLSHARK 406
Score = 36.2 bits (82), Expect = 0.15
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 171 HHHHHHHHSHHSAEISAVAAH 191
HHHHHHHH HH + +H
Sbjct: 383 HHHHHHHHHHHHHTVGLNLSH 403
>SNF1_CANTR (O94168) Carbon catabolite derepressing protein kinase
(EC 2.7.1.-)
Length = 619
Score = 37.0 bits (84), Expect = 0.087
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 171 HHHHHHHHSHHSAE 184
HHHHHHHH HHS +
Sbjct: 19 HHHHHHHHHHHSQQ 32
Score = 33.1 bits (74), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 162 YKGKEFYIGHHHHHHHHSHHSAE 184
+ G + HHHHHHHHS A+
Sbjct: 13 HSGDHQHHHHHHHHHHHSQQPAQ 35
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.327 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,477,312
Number of Sequences: 164201
Number of extensions: 1662707
Number of successful extensions: 10790
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 8198
Number of HSP's gapped (non-prelim): 978
length of query: 392
length of database: 59,974,054
effective HSP length: 112
effective length of query: 280
effective length of database: 41,583,542
effective search space: 11643391760
effective search space used: 11643391760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC133139.8