BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC131240.3 + phase: 0 
         (562 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRA1_LACHE (P35880) Transposase for insertion sequence element I...    40  0.012
TTP1_YEAST (P38069) TTP1 protein (Mannan synthesis protein MNN2)       37  0.10
TRA5_RHIME (Q52873) Transposase for insertion sequence element I...    36  0.31
TRA6_STAAU (P19775) Transposase for insertion sequence element I...    33  2.0
TRA6_ENTFA (P59787) Transposase for insertion sequence element I...    33  2.0
TRA6_BURCE (P24575) Transposase for insertion sequence element I...    33  2.6
MAD1_CANGA (Q6FS63) Spindle assembly checkpoint component MAD1 (...    32  5.8
SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8                31  9.8
RAG1_XENLA (Q91829) V(D)J recombination activating protein 1 (RA...    31  9.8

>TRA1_LACHE (P35880) Transposase for insertion sequence element
           IS1201
          Length = 369

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 24/101 (23%), Positives = 51/101 (49%), Gaps = 5/101 (4%)

Query: 227 DATYKKIKYNT----PLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAMGGKL 282
           DATY  ++  T     + I  G+  +    +    I  +E  + +  LL+  +++ G + 
Sbjct: 163 DATYVPLRRETFEREAVYIAIGIKPNGHKEVIDYCIAPNENIEVWTELLQS-MKSRGLEQ 221

Query: 283 PVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIK 323
               ++DG + M+ A+ K +P+AH + C  H++RN  + ++
Sbjct: 222 VELFLSDGVVGMKTALAKTYPQAHFQRCLVHVMRNICAKVR 262


>TTP1_YEAST (P38069) TTP1 protein (Mannan synthesis protein MNN2)
          Length = 597

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 23/55 (41%), Positives = 29/55 (51%), Gaps = 1/55 (1%)

Query: 369 KRKMWAAAHFRGKFFAGFRTTSRCEGLHSEFGKYVSALTNLHDFFQQFFRWLNYM 423
           K    AAA+F G  F   RT +  EG H E G +  A+   HDF Q + R+LN M
Sbjct: 399 KETFIAAANFYGLSFYQVRTRTGVEGYHDEDGFHGVAMLQ-HDFVQDYGRYLNAM 452


>TRA5_RHIME (Q52873) Transposase for insertion sequence element
           ISRM5
          Length = 398

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 224 LAFDATYKKIK-----YNTPLVIFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAM 278
           L  DA Y+K++      +  ++I  G++   +  I    + G E+   +   L + ++  
Sbjct: 161 LILDARYEKVREAGVVMSQAVLIAVGIDWDGRRQILSVEMAGRESRSAWKDFL-VRLKGR 219

Query: 279 GGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLH 326
           G K    V++D    +  AI +V PEA  + C  H +RNA  ++   H
Sbjct: 220 GLKGVELVVSDDHAGLVAAIGEVIPEAAWQRCYVHFLRNALDHLPRKH 267


>TRA6_STAAU (P19775) Transposase for insertion sequence element
           IS256 in transposon Tn4001
          Length = 390

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 224 LAFDATYKKIKYNTPLV-----IFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAM 278
           L  D  Y K++    ++     I  G+       I G  I   E+E+T+    + +++  
Sbjct: 164 LMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFE-YLKER 222

Query: 279 GGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLHFVSKFKDCLLG 337
           G +    VI+D    + +AIRK F     + C  H +RN  + I   +  S F++ + G
Sbjct: 223 GLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKS-FREAVKG 280


>TRA6_ENTFA (P59787) Transposase for insertion sequence element
           IS256 in transposon Tn4001
          Length = 390

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 224 LAFDATYKKIKYNTPLV-----IFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAM 278
           L  D  Y K++    ++     I  G+       I G  I   E+E+T+    + +++  
Sbjct: 164 LMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFE-YLKER 222

Query: 279 GGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNATSNIKNLHFVSKFKDCLLG 337
           G +    VI+D    + +AIRK F     + C  H +RN  + I   +  S F++ + G
Sbjct: 223 GLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKS-FREAVKG 280


>TRA6_BURCE (P24575) Transposase for insertion sequence element
           IS406
          Length = 388

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 224 LAFDATYKKIKYNTPLV-----IFSGVNHHNQSIIFGSAIIGDETEDTYVWLLKIFVEAM 278
           L  DA Y+K++    +V     I  G+    +  + G  +   E E  +   L+  + A 
Sbjct: 163 LFLDARYEKVRLEGRIVDCAVLIAVGIEASGKRRVLGCEVATSEAEINWRRFLESLL-AR 221

Query: 279 GGKLPVSVITDGDLSMRNAIRKVFPEAHHRLCAWHLIRNA 318
           G K    +I D    ++ A R V P    + C +HL +NA
Sbjct: 222 GLKGVTLIIADDHAGLKAARRAVLPSVPWQRCQFHLQQNA 261


>MAD1_CANGA (Q6FS63) Spindle assembly checkpoint component MAD1
           (Mitotic arrest deficient protein 1)
          Length = 657

 Score = 31.6 bits (70), Expect = 5.8
 Identities = 12/41 (29%), Positives = 23/41 (55%)

Query: 339 VDVDVFQRKWEELVTEFGLEENPWMLEMYQKRKMWAAAHFR 379
           +DVD ++ K++ L+ ++ +E+  W  E Y   K   A H +
Sbjct: 33  IDVDNWKYKYDNLLNQYEIEKVRWQKEQYDSEKSHEALHLQ 73


>SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8
          Length = 1427

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 15/62 (24%), Positives = 31/62 (49%), Gaps = 3/62 (4%)

Query: 411 DFFQQFFRWLNYMRYREIEADFSSSHGDIVVQTQHHHLERSAFK---LYTKTIFRLFRKV 467
           + F  FF+W+ ++ Y ++ +D  S    + +   +  L         L+TKT   +++KV
Sbjct: 707 EVFHHFFKWIEFIVYHQLLSDIESLEALMDILLCYQKLFSQFINDHILFTKTFIFIYKKV 766

Query: 468 LE 469
           L+
Sbjct: 767 LK 768


>RAG1_XENLA (Q91829) V(D)J recombination activating protein 1
           (RAG-1)
          Length = 1045

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 486 HNHIVRRYPRQDIEWTVS--YCEHRLVFECTCKRLETLGIACEHVMCVVKFLGIVNLPGI 543
           +N +V  YP  D   +VS   CEH L         + +  +C+H+ C +  L  + L G 
Sbjct: 277 NNLLVLDYP-SDFVKSVSCLVCEHILS--------DPVQTSCKHLFCRICILKYIKLMGC 327

Query: 544 ACEQCFSPC 552
            C  C  PC
Sbjct: 328 YCPSCKYPC 336


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,158,836
Number of Sequences: 164201
Number of extensions: 2845591
Number of successful extensions: 7878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7873
Number of HSP's gapped (non-prelim): 10
length of query: 562
length of database: 59,974,054
effective HSP length: 115
effective length of query: 447
effective length of database: 41,090,939
effective search space: 18367649733
effective search space used: 18367649733
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)