BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC131240.2 + phase: 0 
         (90 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DAPF_BUCBP (P59582) Diaminopimelate epimerase (EC 5.1.1.7) (DAP ...    27  7.0

>DAPF_BUCBP (P59582) Diaminopimelate epimerase (EC 5.1.1.7) (DAP
           epimerase)
          Length = 286

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 11  NFAVAFALFYLITVESWRVHSQEPKKLYVNM---TLVNNARETGAFCLDGSLPAYHLDRG 67
           N A  FALF L+   +      + + LYV+    TL+ N    G  C+D  +P + L   
Sbjct: 87  NGARCFALFVLLKKLT------KKRTLYVSTNTTTLILNVLNNGNVCVDMGVPCFKLKNI 140

Query: 68  FG 69
           FG
Sbjct: 141 FG 142


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.326    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,937,367
Number of Sequences: 164201
Number of extensions: 387995
Number of successful extensions: 800
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 1
length of query: 90
length of database: 59,974,054
effective HSP length: 66
effective length of query: 24
effective length of database: 49,136,788
effective search space: 1179282912
effective search space used: 1179282912
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)